prot_H-elongata_contig19678.5487.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19678.5487.1
Unique Nameprot_H-elongata_contig19678.5487.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length149
Homology
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6A4DAE2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DAE2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.610e-24
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 0
Query:    6 AELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPT-LLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGITCGG 148
            A + +KF++KD+G AR+ +G  I  + + R L I Q  Y ESI+ KFG +         E    L KADE +  E+K +++  PYR  VG+LM+ A  TRPDI+ AV  ++RF +N G  H  A +K+++YLL TK  GI   G
Sbjct:   46 AGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPPEPAVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDG 189          
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.840e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 0
Query:    2 DRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGIT 145
            D+F  +L     +K++GD R++ GC   R+  A  LKI Q  Y E +  +FGV+ G  I     +P  LK  E    ++ EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C +    H +A + I+ Y++ T   GIT
Sbjct:  137 DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP----LPVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGIT 273          
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6A4BDE5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BDE5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.000e-24
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 0
Query:    6 AELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSN-ISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGITCGG 148
            A + +KF++KD+G AR+ +G  I  + + R L I Q  Y ESI+ KFG +     ++ +     L KADE +  E+K +++  PYR  VG+ M+ A  TRPDI+ AV  ++RF +N G  H  A +K+++YLL TK  GI   G
Sbjct:   16 AGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAEPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSRMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDG 159          
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.510e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 0
Query:    2 DRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGIT 145
            D+F  +L     +K++GD R++ GC   R+  A  LKI Q  Y E +  +FGV+ G  I     +P  LK  E    ++ EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C +    H +A + I+ Y++ T   GIT
Sbjct:   78 DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP----LPVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGIT 214          
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.090e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 0
Query:    2 DRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGIT 145
            D+F  +L     +K++GD R++ GC   R+  A  LKI Q  Y E +  +FGV+ G  I     +P  LK  E    ++ EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C +    H +A + I+ Y++ T   GIT
Sbjct:  311 DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP----LPVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGIT 447          
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.130e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 0
Query:    6 AELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSN-ISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGITCGG 148
            A + +KF++KDMG AR+ +G  I  + + R L I Q  Y ESI+ KFG +     ++ +     L KADE +  E+K +++  PYR  VG+LM+ A  TRPDI+ AV  ++RF +N G  H  A +K++ YLL TK  GI   G
Sbjct:   64 AGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDG 207          
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6A3YEB8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YEB8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.610e-24
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 0
Query:    6 AELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPT-LLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGITCGG 148
            A + +KF++KD+G AR+ +G  I  + + R L I Q  Y ESI+ KFG +         E    L KADE +  E+K +++  PYR  VG+LM+ A  TRPDI+ AV  ++RF +N G  H  A +K+++YLL TK  GI   G
Sbjct:   16 AGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPPEPAVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDG 159          
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.710e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 0
Query:    2 DRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGIT 145
            D+F  +L     +K++GD R++ GC   R+  A  LKI Q  Y E +  +FGV+ G  I     +P  LK  E    ++ EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C +    H +A + I+ Y++ T   GIT
Sbjct:  832 DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP----LPVGLKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGIT 968          
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.920e-24
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 0
Query:    2 DRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGIT 145
            D+F  +L    ++K++GD  ++ GC   R+  A  LKI Q  Y E +  +FGV+ G  I     +P  +K  E    ++ EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C +    H +A + I+ Y++ T   GIT
Sbjct:   36 DQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP----LPVGMKLSEF---DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGIT 172          
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Match: A0A6A4CX45_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CX45_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.400e-24
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = 0
Query:    6 AELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVGKFGVKKGSN-ISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTATMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTK 140
            A + +KF++KD+G AR+ +G  I  + + R L I Q  Y ESI+ KFG +     ++ +     L KADE +  E+K +++  PYR  VG+LM+ A  TRPDI+ AV  ++RF +N G  H  A +K+++YLL TK
Sbjct:   16 AGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTK 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19678.5487.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4DAE2_9STRA1.610e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE1.840e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4BDE5_9STRA2.000e-2439.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0Z9_9PHAE2.510e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE4.090e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GCN4_9STRA4.130e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3YEB8_9STRA4.610e-2440.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE4.710e-2440.97Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KR24_9PHAE6.920e-2439.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4CX45_9STRA7.400e-2440.44Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19678contigH-elongata_contig19678:2403..2849 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19678.5487.1mRNA_H-elongata_contig19678.5487.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19678 2403..2849 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19678.5487.1 ID=prot_H-elongata_contig19678.5487.1|Name=mRNA_H-elongata_contig19678.5487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
IDRFAAELRQKFKLKDMGDARYHMGCHITRNRKARELKIGQHWYVESIVG
KFGVKKGSNISAVSEVPTLLKADESRNPEEKEEIRKFPYREAVGALMWTA
TMTRPDIASAVRAVARFCKNSGSAHKQALMKIMQYLLHTKGWGITCGG*
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