mRNA_H-elongata_contig1962.5469.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1962.5469.1
Unique NamemRNA_H-elongata_contig1962.5469.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1962.5469.1 vs. uniprot
Match: D7FW10_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW10_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.360e-24
Identity = 153/370 (41.35%), Postives = 191/370 (51.62%), Query Frame = 2 
Query:  257 EDENMMFSVDVDKLPTFVVFTAGDQRRQRREDVICGSGSAACKARLLATIASVSPHAGAPEKHSEEKVRRDRAIRVHGSARGNVS--KMEKTNSGAA--------PDK-DVEME------------------DP--IADVSTREELRRIVISLREEHRPLVVMYHARWCRTCAHLAPMFRRLARQRT-----FEGAN-----GTRLAPTFCRVDVS--KWG----------APYTNERTSSTRPT----------PRLPLLREG-----QGL---DRNRGFTSRETVRF-----GGDSEVKLMPEGSTAMENCDVCGTSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 1138
            E+     +VDV+KLPTFV F   D+ R RRE+VI G  +  C   L   +AS+S   G+   +S      D  +R  G+  G V       ++ GAA        PD+ D E +                  +P  I ++S + +L R++ +L E   P+VVMYHA WCR CA+L P+FRRLA  +       EG       G+   P FCRVDVS   WG          AP T     +              P    +  G     QGL   DR  G+ + +         G  +E +L+  GS A+ENCDVCG SGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD
Sbjct:  142 EEREEPTNVDVEKLPTFVFFVR-DKGRHRREEVIGGRDARTCATELSERLASISSP-GSTWTNSGSLDDNDSPLRPSGAGEGGVGGGAARTSSDGAAVVGGAAEGPDRLDYETDTGMGRGSGDMVANVDGTGNPTNIVEISDKRDLLRVLGALGEGQGPVVVMYHAPWCRKCAYLTPVFRRLAAAQAPSAGVREGGGSSIERGSSEGPLFCRVDVSHPSWGRRRAVRGASVAPSTVASAGTAAXXXXXXXXXXXXPNTAAIAAGASSQAQGLGFGDRAAGWVAADATTATAEAEGTIAETELLHAGSQAVENCDVCGGSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 509
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BLAST of mRNA_H-elongata_contig1962.5469.1 vs. uniprot
Match: A0A6H5JLH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.080e-21
Identity = 110/373 (29.49%), Postives = 142/373 (38.07%), Query Frame = 2 
Query:  275 FSVDVDKLPTFVVFTAGDQRRQRREDVICGSGSAACKARLLATIASVSPHAGAPEKHSEEKVRRDRAIRVHGSARGNVSK-MEKTNSGAAPDKDVEMEDP------------------------------IADVSTREELRRIVISLREEHRPLVVMYHARWCRTCAHLAPMFRRLAR-QRTFEGAN---------GTRLAPTFCRVDVS--KWG----------APYT------------------------NERTSSTRPTPRLPLLREGQGL---DRNRGFTSRETVRF-----GGDSEVKLMPEGSTAMENCDVCGTSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 1138
             SV VDKLPTFV F   D  R RRE+V  G  +  C  +L   +AS+S   G+   +S      D  +R  G+  G V   + +T S  A       E P                              I ++S + EL R++ +  E   P+VVMYHA WCR CA+LAP+FRRLA  Q T  G           G+   P FCRVDVS   WG          AP T                          R +  + +       + +GL   DR  G  + +         G  +E +L+  GS A+ENCDVCG SGFVP                                       GGKCYMCD
Sbjct:  149 ISVYVDKLPTFVFFVR-DNGRHRREEVTGGRDARTCATKLRERLASISSP-GSTWTNSGSLDDNDSPLRPSGAGEGGVGGGVARTRSDGAAVVGGAAEGPNRLDNETDTGMGRGNGGMGAIVDGTGSPTNIVEISDKRELLRVLGARGEGQGPVVVMYHAPWCRKCAYLAPVFRRLAAAQATSVGVTKAGGSSSDRGSSGGPLFCRVDVSDPSWGRRRAVRGSSVAPATVASEGTAAXXXXXXXXXXXXXXXXXVRRARNKASIAAGASSQARGLGVGDRAAGLMAADATATPANAEGKIAETELLHAGSQAVENCDVCGGSGFVPCGECGGLGAVSRASPDGKHTMAVTCSSCVGYKRLRCPSCGGKCYMCD 519
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1962.5469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW10_ECTSI2.360e-2441.35Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5JLH3_9PHAE1.080e-2129.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1962contigH-elongata_contig1962:11171..13411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionThioredoxin-like fold and cysteine-rich domain protein
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-01_002920.1
Exons2
Model size1282
Cds size1107
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1962.5469.1prot_H-elongata_contig1962.5469.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1962 11312..13377 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.2782786-UTR-H-elongata_contig1962:11170..113111622930112.2782786-UTR-H-elongata_contig1962:11170..11311Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1962 11171..11311 -
1691679285.160823-UTR-H-elongata_contig1962:11170..113111691679285.160823-UTR-H-elongata_contig1962:11170..11311Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1962 11171..11311 -
1622930112.3303726-UTR-H-elongata_contig1962:13377..134111622930112.3303726-UTR-H-elongata_contig1962:13377..13411Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1962 13378..13411 -
1691679285.2018807-UTR-H-elongata_contig1962:13377..134111691679285.2018807-UTR-H-elongata_contig1962:13377..13411Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1962 13378..13411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.2955093-CDS-H-elongata_contig1962:11311..124001622930112.2955093-CDS-H-elongata_contig1962:11311..12400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1962 11312..12400 -
1691679285.175305-CDS-H-elongata_contig1962:11311..124001691679285.175305-CDS-H-elongata_contig1962:11311..12400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1962 11312..12400 -
1622930112.3154175-CDS-H-elongata_contig1962:13359..133771622930112.3154175-CDS-H-elongata_contig1962:13359..13377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1962 13360..13377 -
1691679285.1919644-CDS-H-elongata_contig1962:13359..133771691679285.1919644-CDS-H-elongata_contig1962:13359..13377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1962 13360..13377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1962.5469.1

>prot_H-elongata_contig1962.5469.1 ID=prot_H-elongata_contig1962.5469.1|Name=mRNA_H-elongata_contig1962.5469.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=369bp
MRLRPGGMVGCAILAPATFLLAVNGLLFYPPQGRMKRPFASTASTHQCAA
RREAFDGGPLKERAGEVATPRAPREDENMMFSVDVDKLPTFVVFTAGDQR
RQRREDVICGSGSAACKARLLATIASVSPHAGAPEKHSEEKVRRDRAIRV
HGSARGNVSKMEKTNSGAAPDKDVEMEDPIADVSTREELRRIVISLREEH
RPLVVMYHARWCRTCAHLAPMFRRLARQRTFEGANGTRLAPTFCRVDVSK
WGAPYTNERTSSTRPTPRLPLLREGQGLDRNRGFTSRETVRFGGDSEVKL
MPEGSTAMENCDVCGTSGFVPCGTCQSKGTVARSSPDGKHTLMITCPACV
GYKRLRCPSCGGKCYMCD*
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mRNA from alignment at H-elongata_contig1962:11171..13411-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1962.5469.1 ID=mRNA_H-elongata_contig1962.5469.1|Name=mRNA_H-elongata_contig1962.5469.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2241bp|location=Sequence derived from alignment at H-elongata_contig1962:11171..13411- (Himanthalia elongata Himel1 dioecious)
GCCAGAACTTTGAAACATCTTGCTGTGGCGGAGTATGAGGCTGCGCCCTG
GGGTGGGTGACGTTCCCAAATGGTAGCAGAAGAATAAGTTCTTGATACGT
TTAGCGTACTTAGTGTGGGATATAGGTGTTCTGTTCAGTGGATTGCTGCT
AGAGGGTCGCACGAGACGTGGACATGCATCGTACGCAGTTATTAATTCAG
GGAATATAAGGTGCTGGAAGAGTTGAGATTGACTCGTTCTTCGTTTTGTC
CCTGCAGCTGCTGGAAGAGCAGGGCTGTGTTGCACTTGGTACTTTTATTC
ATTTCAACTACTCTATATCTGCAAGTAATATGTCGTAATCACTTCAAAAA
TAACGAAAAGCCGCAATATACAATATGTCAACATCAACAAGAGGCTTTGC
CACTTCAAAACAACCTTTAAAGTATTTAATACTGGTATCATAAAGCTCGT
TAGAAAAAAACTAACTGTGGAACCAATTGCAAAGGGTAAATTAAAGCGAG
AGTTACACGTGAACGTCGGCGAGATGTCTTCATCCCTCGAGGCCACAGGG
GGGATGGAACTGGTATCGACAGAGATGTAAATATCCCAGAAGAAAAAATA
CACAATAAAGTTAGCATTTTTTTACCTTTTATGGCATATGGAAAGGTCTC
CTAGGTTTGTAATTTTTTCCCCCCAAAAATATATTCTGAACTCATTTCAA
ATCCTCCGAATATCCACTTTTTTTTACAACTGAACTACTTTTACTACGCT
TACCACACAAATGCTGAATATGTTTTGTCTCAGTGGCTTAATGGGTAACC
TCTCATTACGGTATGAGTTATTACAAATATTCAACACCACTCTTCGCTAC
TGCTGCTGTTCGCCAGCAACGCATGTGAACAATGTCACTGTTTTGGCTGC
TACTTGATCGTGTAATCACAGGCTGCGGATGGGACAACTCCAACTCCTTG
TATTCACCTTGATTTTATCCTCGTTGTTCTGCCACATACAAATCGCTTGG
CATCATCGCAGGGCATGGTGGGCTGCGCGATCCTCGCGCCTGCAACTTTC
CTCCTCGCTGTGAATGGTCTGTTGTTCTACCCACCACAAGGCCGCATGAA
GCGGCCGTTCGCATCTACCGCTTCGACCCACCAGTGCGCTGCTCGACGTG
AAGCTTTCGATGGAGGCCCGTTGAAGGAGAGGGCAGGAGAGGTAGCTACT
CCGAGAGCTCCTCGAGAAGATGAGAACATGATGTTCAGCGTGGACGTGGA
CAAGCTCCCGACGTTTGTGGTCTTCACCGCGGGGGATCAACGACGACAGC
GGCGGGAGGACGTCATCTGCGGAAGCGGCTCTGCGGCCTGTAAAGCACGT
CTCCTCGCCACGATAGCGTCCGTGTCTCCACATGCTGGCGCGCCAGAGAA
ACATAGCGAAGAGAAAGTTCGACGGGATCGTGCGATCAGAGTCCACGGTA
GCGCGCGCGGGAATGTAAGCAAGATGGAAAAGACCAACAGTGGGGCTGCT
CCTGACAAAGACGTCGAGATGGAAGATCCTATTGCGGACGTCTCCACTCG
AGAGGAACTGCGTCGAATCGTGATCTCCCTGCGAGAGGAGCACCGACCGT
TGGTTGTCATGTACCACGCACGTTGGTGTCGAACATGTGCCCACCTTGCT
CCCATGTTCCGTCGTCTGGCCCGGCAGCGGACATTCGAGGGAGCGAATGG
AACGAGGCTTGCGCCAACCTTCTGCCGGGTTGATGTTTCCAAGTGGGGGG
CACCTTACACGAACGAGCGAACGAGTTCCACGCGTCCCACGCCTCGGCTG
CCACTCTTGAGGGAGGGACAGGGATTGGATCGGAACCGTGGTTTTACATC
TCGCGAAACGGTCAGGTTTGGGGGTGACAGCGAGGTAAAATTGATGCCCG
AAGGGTCTACGGCAATGGAGAATTGCGACGTTTGCGGAACGTCGGGCTTC
GTCCCGTGCGGAACTTGCCAAAGCAAGGGTACCGTCGCCCGCTCAAGCCC
GGATGGGAAGCATACCTTGATGATTACATGCCCTGCATGCGTCGGGTACA
AGCGCTTGCGTTGCCCCTCGTGCGGGGGCAAGTGTTACATGTGTGACTAG
AGCCGCGGCCGTGGCATCGCGTTGACTTTTCTCTTCAAGGAAACGAGTTA
TTAATAGTTTAAATATCGATTCAAAGGAGCTACAGACGTACGAAGCTGCA
GTTATGACAGGGTTATTTGTAGCGGCGATGAAAAAAGTATG
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Coding sequence (CDS) from alignment at H-elongata_contig1962:11171..13411-

>mRNA_H-elongata_contig1962.5469.1 ID=mRNA_H-elongata_contig1962.5469.1|Name=mRNA_H-elongata_contig1962.5469.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2214bp|location=Sequence derived from alignment at H-elongata_contig1962:11171..13411- (Himanthalia elongata Himel1 dioecious)
ATGAGGCTGCGCCCTGGGATGAGGCTGCGCCCTGGGGGCATGGTGGGCTG
CGCGATCCTCGCGCCTGCAACTTTCCTCCTCGCTGTGAATGGTCTGTTGT
TCTACCCACCACAAGGCCGCATGAAGCGGCCGTTCGCATCTACCGCTTCG
ACCCACCAGTGCGCTGCTCGACGTGAAGCTTTCGATGGAGGCCCGTTGAA
GGAGAGGGCAGGAGAGGTAGCTACTCCGAGAGCTCCTCGAGAAGATGAGA
ACATGATGTTCAGCGTGGACGTGGACAAGCTCCCGACGTTTGTGGTCTTC
ACCGCGGGGGATCAACGACGACAGCGGCGGGAGGACGTCATCTGCGGAAG
CGGCTCTGCGGCCTGTAAAGCACGTCTCCTCGCCACGATAGCGTCCGTGT
CTCCACATGCTGGCGCGCCAGAGAAACATAGCGAAGAGAAAGTTCGACGG
GATCGTGCGATCAGAGTCCACGGTAGCGCGCGCGGGAATGTAAGCAAGAT
GGAAAAGACCAACAGTGGGGCTGCTCCTGACAAAGACGTCGAGATGGAAG
ATCCTATTGCGGACGTCTCCACTCGAGAGGAACTGCGTCGAATCGTGATC
TCCCTGCGAGAGGAGCACCGACCGTTGGTTGTCATGTACCACGCACGTTG
GTGTCGAACATGTGCCCACCTTGCTCCCATGTTCCGTCGTCTGGCCCGGC
AGCGGACATTCGAGGGAGCGAATGGAACGAGGCTTGCGCCAACCTTCTGC
CGGGTTGATGTTTCCAAGTGGGGGGCACCTTACACGAACGAGCGAACGAG
TTCCACGCGTCCCACGCCTCGGCTGCCACTCTTGAGGGAGGGACAGGGAT
TGGATCGGAACCGTGGTTTTACATCTCGCGAAACGGTCAGGTTTGGGGGT
GACAGCGAGGTAAAATTGATGCCCGAAGGGTCTACGGCAATGGAGAATTG
CGACGTTTGCGGAACGTCGGGCTTCGTCCCGTGCGGAACTTGCCAAAGCA
AGGGTACCGTCGCCCGCTCAAGCCCGGATGGGAAGCATACCTTGATGATT
ACATGCCCTGCATGCGTCGGGTACAAGCGCTTGCGTTGCCCCTCGTGCGG
GGGCAAGTGTTACATGTGTGACTAGGGCATGGTGGGCTGCGCGATCCTCG
CGCCTGCAACTTTCCTCCTCGCTGTGAATGGTCTGTTGTTCTACCCACCA
CAAGGCCGCATGAAGCGGCCGTTCGCATCTACCGCTTCGACCCACCAGTG
CGCTGCTCGACGTGAAGCTTTCGATGGAGGCCCGTTGAAGGAGAGGGCAG
GAGAGGTAGCTACTCCGAGAGCTCCTCGAGAAGATGAGAACATGATGTTC
AGCGTGGACGTGGACAAGCTCCCGACGTTTGTGGTCTTCACCGCGGGGGA
TCAACGACGACAGCGGCGGGAGGACGTCATCTGCGGAAGCGGCTCTGCGG
CCTGTAAAGCACGTCTCCTCGCCACGATAGCGTCCGTGTCTCCACATGCT
GGCGCGCCAGAGAAACATAGCGAAGAGAAAGTTCGACGGGATCGTGCGAT
CAGAGTCCACGGTAGCGCGCGCGGGAATGTAAGCAAGATGGAAAAGACCA
ACAGTGGGGCTGCTCCTGACAAAGACGTCGAGATGGAAGATCCTATTGCG
GACGTCTCCACTCGAGAGGAACTGCGTCGAATCGTGATCTCCCTGCGAGA
GGAGCACCGACCGTTGGTTGTCATGTACCACGCACGTTGGTGTCGAACAT
GTGCCCACCTTGCTCCCATGTTCCGTCGTCTGGCCCGGCAGCGGACATTC
GAGGGAGCGAATGGAACGAGGCTTGCGCCAACCTTCTGCCGGGTTGATGT
TTCCAAGTGGGGGGCACCTTACACGAACGAGCGAACGAGTTCCACGCGTC
CCACGCCTCGGCTGCCACTCTTGAGGGAGGGACAGGGATTGGATCGGAAC
CGTGGTTTTACATCTCGCGAAACGGTCAGGTTTGGGGGTGACAGCGAGGT
AAAATTGATGCCCGAAGGGTCTACGGCAATGGAGAATTGCGACGTTTGCG
GAACGTCGGGCTTCGTCCCGTGCGGAACTTGCCAAAGCAAGGGTACCGTC
GCCCGCTCAAGCCCGGATGGGAAGCATACCTTGATGATTACATGCCCTGC
ATGCGTCGGGTACAAGCGCTTGCGTTGCCCCTCGTGCGGGGGCAAGTGTT
ACATGTGTGACTAG
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