prot_H-elongata_contig1962.5469.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1962.5469.1
Unique Nameprot_H-elongata_contig1962.5469.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length369
Homology
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BLAST of mRNA_H-elongata_contig1962.5469.1 vs. uniprot
Match: D7FW10_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW10_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 9.140e-25
Identity = 153/370 (41.35%), Postives = 191/370 (51.62%), Query Frame = 0 
Query:   75 EDENMMFSVDVDKLPTFVVFTAGDQRRQRREDVICGSGSAACKARLLATIASVSPHAGAPEKHSEEKVRRDRAIRVHGSARGNVS--KMEKTNSGAA--------PDK-DVEME------------------DP--IADVSTREELRRIVISLREEHRPLVVMYHARWCRTCAHLAPMFRRLARQRT-----FEGAN-----GTRLAPTFCRVDVS--KWG----------APYTNERTSSTRPT----------PRLPLLREG-----QGL---DRNRGFTSRETVRF-----GGDSEVKLMPEGSTAMENCDVCGTSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 368
            E+     +VDV+KLPTFV F   D+ R RRE+VI G  +  C   L   +AS+S   G+   +S      D  +R  G+  G V       ++ GAA        PD+ D E +                  +P  I ++S + +L R++ +L E   P+VVMYHA WCR CA+L P+FRRLA  +       EG       G+   P FCRVDVS   WG          AP T     +              P    +  G     QGL   DR  G+ + +         G  +E +L+  GS A+ENCDVCG SGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD
Sbjct:  142 EEREEPTNVDVEKLPTFVFFVR-DKGRHRREEVIGGRDARTCATELSERLASISSP-GSTWTNSGSLDDNDSPLRPSGAGEGGVGGGAARTSSDGAAVVGGAAEGPDRLDYETDTGMGRGSGDMVANVDGTGNPTNIVEISDKRDLLRVLGALGEGQGPVVVMYHAPWCRKCAYLTPVFRRLAAAQAPSAGVREGGGSSIERGSSEGPLFCRVDVSHPSWGRRRAVRGASVAPSTVASAGTAAXXXXXXXXXXXXPNTAAIAAGASSQAQGLGFGDRAAGWVAADATTATAEAEGTIAETELLHAGSQAVENCDVCGGSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 509
[Close]
BLAST of mRNA_H-elongata_contig1962.5469.1 vs. uniprot
Match: A0A6H5JLH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.580e-22
Identity = 110/373 (29.49%), Postives = 142/373 (38.07%), Query Frame = 0 
Query:   81 FSVDVDKLPTFVVFTAGDQRRQRREDVICGSGSAACKARLLATIASVSPHAGAPEKHSEEKVRRDRAIRVHGSARGNVSK-MEKTNSGAAPDKDVEMEDP------------------------------IADVSTREELRRIVISLREEHRPLVVMYHARWCRTCAHLAPMFRRLAR-QRTFEGAN---------GTRLAPTFCRVDVS--KWG----------APYT------------------------NERTSSTRPTPRLPLLREGQGL---DRNRGFTSRETVRF-----GGDSEVKLMPEGSTAMENCDVCGTSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 368
             SV VDKLPTFV F   D  R RRE+V  G  +  C  +L   +AS+S   G+   +S      D  +R  G+  G V   + +T S  A       E P                              I ++S + EL R++ +  E   P+VVMYHA WCR CA+LAP+FRRLA  Q T  G           G+   P FCRVDVS   WG          AP T                          R +  + +       + +GL   DR  G  + +         G  +E +L+  GS A+ENCDVCG SGFVP                                       GGKCYMCD
Sbjct:  149 ISVYVDKLPTFVFFVR-DNGRHRREEVTGGRDARTCATKLRERLASISSP-GSTWTNSGSLDDNDSPLRPSGAGEGGVGGGVARTRSDGAAVVGGAAEGPNRLDNETDTGMGRGNGGMGAIVDGTGSPTNIVEISDKRELLRVLGARGEGQGPVVVMYHAPWCRKCAYLAPVFRRLAAAQATSVGVTKAGGSSSDRGSSGGPLFCRVDVSDPSWGRRRAVRGSSVAPATVASEGTAAXXXXXXXXXXXXXXXXXVRRARNKASIAAGASSQARGLGVGDRAAGLMAADATATPANAEGKIAETELLHAGSQAVENCDVCGGSGFVPCGECGGLGAVSRASPDGKHTMAVTCSSCVGYKRLRCPSCGGKCYMCD 519
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1962.5469.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW10_ECTSI9.140e-2541.35Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5JLH3_9PHAE4.580e-2229.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 196..284
e-value: 9.0E-6
score: 25.6
NoneNo IPR availableGENE3D3.40.30.10coord: 167..292
e-value: 1.2E-7
score: 33.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 30..368
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 177..286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1962contigH-elongata_contig1962:11312..13377 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1962.5469.1mRNA_H-elongata_contig1962.5469.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1962 11171..13411 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1962.5469.1 ID=prot_H-elongata_contig1962.5469.1|Name=mRNA_H-elongata_contig1962.5469.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=369bp
MRLRPGGMVGCAILAPATFLLAVNGLLFYPPQGRMKRPFASTASTHQCAA
RREAFDGGPLKERAGEVATPRAPREDENMMFSVDVDKLPTFVVFTAGDQR
RQRREDVICGSGSAACKARLLATIASVSPHAGAPEKHSEEKVRRDRAIRV
HGSARGNVSKMEKTNSGAAPDKDVEMEDPIADVSTREELRRIVISLREEH
RPLVVMYHARWCRTCAHLAPMFRRLARQRTFEGANGTRLAPTFCRVDVSK
WGAPYTNERTSSTRPTPRLPLLREGQGLDRNRGFTSRETVRFGGDSEVKL
MPEGSTAMENCDVCGTSGFVPCGTCQSKGTVARSSPDGKHTLMITCPACV
GYKRLRCPSCGGKCYMCD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR036249Thioredoxin-like_sf