mRNA_H-elongata_contig19615.5466.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A6H5K4B7_9PHAE (GAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B7_9PHAE) HSP 1 Score: 182 bits (463), Expect = 5.340e-57 Identity = 83/101 (82.18%), Postives = 97/101 (96.04%), Query Frame = 1
Query: 22 PKVNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRGGQENR 324
PKVNHLLYTIAKCLP+IC+AQKCTCFLVDD K++LWVVQGEVNMRVPK+KGI GAVATSG+ EN+S+VYADPRFNK+VD+ETG++T SILAMPVRGG+EN+
Sbjct: 6 PKVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGHAENISDVYADPRFNKEVDLETGFQTHSILAMPVRGGEENK 106
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: D8LMW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW7_ECTSI) HSP 1 Score: 178 bits (452), Expect = 4.590e-51 Identity = 81/99 (81.82%), Postives = 95/99 (95.96%), Query Frame = 1
Query: 28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRGGQENR 324
VNHLLYTIAKCLP+IC+AQKCTCFLVDD K++LWVVQGEVNMRVPK+KGI GAVATSG+ EN+S+VYADPRFNK+VD+ETG++T SILAMPVRGG+EN+
Sbjct: 406 VNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGHAENISDVYADPRFNKEVDLETGFQTHSILAMPVRGGEENK 504
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A835YT85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT85_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.840e-26 Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 1
Query: 28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNK 249
V+H+LYTI+ CLP +CDA KCT F+VD+ ELW VQGE+N+R+PKD+GI GAVATSG + N+ + YADPRFN+
Sbjct: 341 VHHILYTISACLPRVCDAHKCTTFIVDEEHQELWAVQGEINIRMPKDRGIAGAVATSGKLINIPDAYADPRFNQ 414
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A6G0XXU7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXU7_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.740e-25 Identity = 45/97 (46.39%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRGGQE 318
+N LL+T+ + + D+ +C+ +L+D + NELW +QGEV++R+P ++GI GAVA +G V N+ N Y DPRFNK+ D + GYKT +ILA+P+R ++
Sbjct: 313 INSLLFTVTHRIQRLVDSDRCSLYLLDKVTNELWTLQGEVDIRIPSNQGICGAVADTGKVINLKNAYEDPRFNKEYDQKLGYKTSTILALPLRSQKQ 409
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A7S1C5Y3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5Y3_9STRA) HSP 1 Score: 106 bits (265), Expect = 7.640e-25 Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 1
Query: 28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRG 309
+N L++TI + I DA +CT FL + ELW +QGEV++R+P DKGI GAVATSG + N+ + Y D RFN++VD +GY+T +IL MP+RG
Sbjct: 286 INSLMFTITQRAHTIVDADRCTFFLANHASKELWAMQGEVDIRIPMDKGIAGAVATSGEMINIHDAYEDSRFNQEVDRASGYRTRTILCMPLRG 379
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A0W8DKU2_PHYNI (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKU2_PHYNI) HSP 1 Score: 104 bits (260), Expect = 1.170e-24 Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 37 LLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRGG 312
L++TI+ + ++ +CT ++VD KNELW +QGEVN+RVP ++GI GAVA + N+ N Y DPRFNKD D + GY+T S+LAMP+R G
Sbjct: 174 LMFTISTRVQRFVNSDRCTLYIVDRAKNELWTLQGEVNIRVPINQGIAGAVAMNNEAINLENAYDDPRFNKDFDQKLGYQTRSVLAMPLRNG 265
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A067CR89_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CR89_SAPPC) HSP 1 Score: 105 bits (263), Expect = 1.530e-24 Identity = 48/94 (51.06%), Postives = 68/94 (72.34%), Query Frame = 1
Query: 28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRG 309
+N L++T+A + + A +C+ +LVD K ELW +QGEV++R+P +GI GAVA GNV N+ N Y D RFNK+VD + GYKT +ILA+P+RG
Sbjct: 296 INSLIFTVAHRIQTLIGADRCSLYLVDKNKGELWTLQGEVDIRIPWHQGISGAVAQEGNVINLLNAYDDARFNKEVDQKLGYKTQTILALPLRG 389
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: D0NXE4_PHYIT (Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase, putative n=8 Tax=Phytophthora TaxID=4783 RepID=D0NXE4_PHYIT) HSP 1 Score: 105 bits (261), Expect = 2.580e-24 Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 37 LLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRGG 312
L++TI+ + ++ +CT ++VD KNELW +QGEVN+RVP ++GI GAVA + N+ N Y DPRFNKD D + GY+T S+LAMP+R G
Sbjct: 282 LMFTISTRVQKFVNSDRCTLYIVDRAKNELWTLQGEVNIRVPLNQGIAGAVALNNEAINLENAYDDPRFNKDFDQKLGYQTRSVLAMPLRNG 373
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A1V9ZE78_9STRA (Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZE78_9STRA) HSP 1 Score: 104 bits (260), Expect = 3.920e-24 Identity = 45/94 (47.87%), Postives = 67/94 (71.28%), Query Frame = 1
Query: 28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRG 309
+N L++T+ + + D+ +C+ +L+D K ELW +QGEV++R+P + GI GAVA G V N+ N Y DPRFNK+ D + GYKT +ILA+P+RG
Sbjct: 294 INSLIFTVTHRIQTLIDSDRCSLYLLDKNKGELWTLQGEVDIRIPSNMGISGAVAEEGKVINLLNAYDDPRFNKEYDQKLGYKTQTILALPLRG 387
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A3R7NGH4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NGH4_9STRA) HSP 1 Score: 103 bits (257), Expect = 5.560e-24 Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 37 LLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVR 306
L++TI+ + ++ +CT ++VD KNELW +QGEVN+RVP ++GI GAVA N++N Y DPRFNKD D + GY+T SILAMP+R
Sbjct: 221 LMFTISTRVQRFVNSDRCTLYIVDRAKNELWTLQGEVNIRVPLNQGIAGAVAQGNEAINLANAYEDPRFNKDFDQKLGYQTRSILAMPLR 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19615.5466.1 >prot_H-elongata_contig19615.5466.1 ID=prot_H-elongata_contig19615.5466.1|Name=mRNA_H-elongata_contig19615.5466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp MPLPTHVPKVNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNback to top mRNA from alignment at H-elongata_contig19615:234..841+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19615.5466.1 ID=mRNA_H-elongata_contig19615.5466.1|Name=mRNA_H-elongata_contig19615.5466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=608bp|location=Sequence derived from alignment at H-elongata_contig19615:234..841+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19615:234..841+ >mRNA_H-elongata_contig19615.5466.1 ID=mRNA_H-elongata_contig19615.5466.1|Name=mRNA_H-elongata_contig19615.5466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig19615:234..841+ (Himanthalia elongata Himel1 dioecious)back to top |