mRNA_H-elongata_contig19615.5466.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19615.5466.1
Unique NamemRNA_H-elongata_contig19615.5466.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A6H5K4B7_9PHAE (GAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B7_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 5.340e-57
Identity = 83/101 (82.18%), Postives = 97/101 (96.04%), Query Frame = 1
Query:   22 PKVNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRGGQENR 324
            PKVNHLLYTIAKCLP+IC+AQKCTCFLVDD K++LWVVQGEVNMRVPK+KGI GAVATSG+ EN+S+VYADPRFNK+VD+ETG++T SILAMPVRGG+EN+
Sbjct:    6 PKVNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGHAENISDVYADPRFNKEVDLETGFQTHSILAMPVRGGEENK 106          
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: D8LMW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW7_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 4.590e-51
Identity = 81/99 (81.82%), Postives = 95/99 (95.96%), Query Frame = 1
Query:   28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRGGQENR 324
            VNHLLYTIAKCLP+IC+AQKCTCFLVDD K++LWVVQGEVNMRVPK+KGI GAVATSG+ EN+S+VYADPRFNK+VD+ETG++T SILAMPVRGG+EN+
Sbjct:  406 VNHLLYTIAKCLPVICEAQKCTCFLVDDDKDQLWVVQGEVNMRVPKNKGIAGAVATSGHAENISDVYADPRFNKEVDLETGFQTHSILAMPVRGGEENK 504          
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A835YT85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT85_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.840e-26
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 1
Query:   28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNK 249
            V+H+LYTI+ CLP +CDA KCT F+VD+   ELW VQGE+N+R+PKD+GI GAVATSG + N+ + YADPRFN+
Sbjct:  341 VHHILYTISACLPRVCDAHKCTTFIVDEEHQELWAVQGEINIRMPKDRGIAGAVATSGKLINIPDAYADPRFNQ 414          
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A6G0XXU7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXU7_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.740e-25
Identity = 45/97 (46.39%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRGGQE 318
            +N LL+T+   +  + D+ +C+ +L+D + NELW +QGEV++R+P ++GI GAVA +G V N+ N Y DPRFNK+ D + GYKT +ILA+P+R  ++
Sbjct:  313 INSLLFTVTHRIQRLVDSDRCSLYLLDKVTNELWTLQGEVDIRIPSNQGICGAVADTGKVINLKNAYEDPRFNKEYDQKLGYKTSTILALPLRSQKQ 409          
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A7S1C5Y3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5Y3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.640e-25
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRG 309
            +N L++TI +    I DA +CT FL +    ELW +QGEV++R+P DKGI GAVATSG + N+ + Y D RFN++VD  +GY+T +IL MP+RG
Sbjct:  286 INSLMFTITQRAHTIVDADRCTFFLANHASKELWAMQGEVDIRIPMDKGIAGAVATSGEMINIHDAYEDSRFNQEVDRASGYRTRTILCMPLRG 379          
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A0W8DKU2_PHYNI (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKU2_PHYNI)

HSP 1 Score: 104 bits (260), Expect = 1.170e-24
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   37 LLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRGG 312
            L++TI+  +    ++ +CT ++VD  KNELW +QGEVN+RVP ++GI GAVA +    N+ N Y DPRFNKD D + GY+T S+LAMP+R G
Sbjct:  174 LMFTISTRVQRFVNSDRCTLYIVDRAKNELWTLQGEVNIRVPINQGIAGAVAMNNEAINLENAYDDPRFNKDFDQKLGYQTRSVLAMPLRNG 265          
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A067CR89_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CR89_SAPPC)

HSP 1 Score: 105 bits (263), Expect = 1.530e-24
Identity = 48/94 (51.06%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRG 309
            +N L++T+A  +  +  A +C+ +LVD  K ELW +QGEV++R+P  +GI GAVA  GNV N+ N Y D RFNK+VD + GYKT +ILA+P+RG
Sbjct:  296 INSLIFTVAHRIQTLIGADRCSLYLVDKNKGELWTLQGEVDIRIPWHQGISGAVAQEGNVINLLNAYDDARFNKEVDQKLGYKTQTILALPLRG 389          
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: D0NXE4_PHYIT (Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase, putative n=8 Tax=Phytophthora TaxID=4783 RepID=D0NXE4_PHYIT)

HSP 1 Score: 105 bits (261), Expect = 2.580e-24
Identity = 47/92 (51.09%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   37 LLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRGG 312
            L++TI+  +    ++ +CT ++VD  KNELW +QGEVN+RVP ++GI GAVA +    N+ N Y DPRFNKD D + GY+T S+LAMP+R G
Sbjct:  282 LMFTISTRVQKFVNSDRCTLYIVDRAKNELWTLQGEVNIRVPLNQGIAGAVALNNEAINLENAYDDPRFNKDFDQKLGYQTRSVLAMPLRNG 373          
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A1V9ZE78_9STRA (Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZE78_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.920e-24
Identity = 45/94 (47.87%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   28 VNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVRG 309
            +N L++T+   +  + D+ +C+ +L+D  K ELW +QGEV++R+P + GI GAVA  G V N+ N Y DPRFNK+ D + GYKT +ILA+P+RG
Sbjct:  294 INSLIFTVTHRIQTLIDSDRCSLYLLDKNKGELWTLQGEVDIRIPSNMGISGAVAEEGKVINLLNAYDDPRFNKEYDQKLGYKTQTILALPLRG 387          
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Match: A0A3R7NGH4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NGH4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.560e-24
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   37 LLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVNMRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMPVR 306
            L++TI+  +    ++ +CT ++VD  KNELW +QGEVN+RVP ++GI GAVA      N++N Y DPRFNKD D + GY+T SILAMP+R
Sbjct:  221 LMFTISTRVQRFVNSDRCTLYIVDRAKNELWTLQGEVNIRVPLNQGIAGAVAQGNEAINLANAYEDPRFNKDFDQKLGYQTRSILAMPLR 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19615.5466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4B7_9PHAE5.340e-5782.18GAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMW7_ECTSI4.590e-5181.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YT85_9STRA1.840e-2663.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0XXU7_9STRA1.740e-2546.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1C5Y3_9STRA7.640e-2551.06Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0W8DKU2_PHYNI1.170e-2451.09UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
A0A067CR89_SAPPC1.530e-2451.06Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
D0NXE4_PHYIT2.580e-2451.09Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase, p... [more]
A0A1V9ZE78_9STRA3.920e-2447.87Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase n=... [more]
A0A3R7NGH4_9STRA5.560e-2452.22Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19615contigH-elongata_contig19615:234..841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue1.1e-42
Seed eggNOG ortholog2880.D8LMW7
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
Ec32 ortholog descriptionGAF domain-like
Ec32 orthologEc-02_003910.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.1450953-CDS-H-elongata_contig19615:233..4371622930112.1450953-CDS-H-elongata_contig19615:233..437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19615 234..437 +
1691679285.11712-CDS-H-elongata_contig19615:233..4371691679285.11712-CDS-H-elongata_contig19615:233..437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19615 234..437 +
1622930112.1575968-CDS-H-elongata_contig19615:718..8411622930112.1575968-CDS-H-elongata_contig19615:718..841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19615 719..841 +
1691679285.136614-CDS-H-elongata_contig19615:718..8411691679285.136614-CDS-H-elongata_contig19615:718..841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19615 719..841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19615.5466.1prot_H-elongata_contig19615.5466.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19615 234..841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19615.5466.1

>prot_H-elongata_contig19615.5466.1 ID=prot_H-elongata_contig19615.5466.1|Name=mRNA_H-elongata_contig19615.5466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MPLPTHVPKVNHLLYTIAKCLPMICDAQKCTCFLVDDIKNELWVVQGEVN
MRVPKDKGIVGAVATSGNVENVSNVYADPRFNKDVDVETGYKTDSILAMP
VRGGQENR*
back to top

mRNA from alignment at H-elongata_contig19615:234..841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19615.5466.1 ID=mRNA_H-elongata_contig19615.5466.1|Name=mRNA_H-elongata_contig19615.5466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=608bp|location=Sequence derived from alignment at H-elongata_contig19615:234..841+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTTGCCCACACACGTACCCAAGGTGAATCATCTGCTATACACGAT TGCAAAGTGCTTACCGATGATCTGCGATGCGCAAAAGTGCACGTGCTTCC TGGTAGACGACATCAAAAACGAGCTGTGGGTCGTGCAGGGCGAAGTTAAT ATGAGAGTGCCCAAGGACAAGGGGATCGTCGGGGCAGTGGCTACTTCCGG AAATGTGAGCCACATGCTAGAGCTAGATGTCTCGCTCACGGACAGACCCG GGGCTGTTTGGCATATTTGCTTGGGTAGTAAAAGGAGGGAAAAGGCGGTT GACGAGTTTCTCTCAACATAAATTCATATAAAATCGCATCGTCGGGCGAT CGGTCCCGGATCACATCGACCTCTCATTGAAATCCCGTCGTCTCGTGGCG TTAGATTCTAACGCGTGCGAGAGTCAATTCTAAAAACAGCAGCTCCCGGC TGAGAGCACATTGATGCCGTCGCGTTCGGCCTCAGGTCGAAAACGTCTCC AACGTTTACGCCGACCCGCGCTTCAACAAAGATGTTGACGTCGAAACGGG TTACAAGACGGACTCAATCCTTGCGATGCCCGTGCGGGGTGGACAAGAAA ATCGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19615:234..841+

>mRNA_H-elongata_contig19615.5466.1 ID=mRNA_H-elongata_contig19615.5466.1|Name=mRNA_H-elongata_contig19615.5466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig19615:234..841+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTTGCCCACACACGTACCCAAGGTGAATCATCTGCTATACACGAT
TGCAAAGTGCTTACCGATGATCTGCGATGCGCAAAAGTGCACGTGCTTCC
TGGTAGACGACATCAAAAACGAGCTGTGGGTCGTGCAGGGCGAAGTTAAT
ATGAGAGTGCCCAAGGACAAGGGGATCGTCGGGGCAGTGGCTACTTCCGG
AAATATGCCCTTGCCCACACACGTACCCAAGGTGAATCATCTGCTATACA
CGATTGCAAAGTGCTTACCGATGATCTGCGATGCGCAAAAGTGCACGTGC
TTCCTGGTAGACGACATCAAAAACGAGCTGTGGGTCGTGCAGGGCGAAGT
TAATATGAGAGTGCCCAAGGACAAGGGGATCGTCGGGGCAGTGGCTACTT
CCGGAAATGTCGAAAACGTCTCCAACGTTTACGCCGACCCGCGCTTCAAC
AAAGATGTTGACGTCGAAACGGGTTACAAGACGGACTCAATCCTTGCGAT
GCCCGTGCGGGGTGGACAAGAAAATCGGTGAGTCGAAAACGTCTCCAACG
TTTACGCCGACCCGCGCTTCAACAAAGATGTTGACGTCGAAACGGGTTAC
AAGACGGACTCAATCCTTGCGATGCCCGTGCGGGGTGGACAAGAAAATCG
GTGA
back to top