mRNA_H-elongata_contig195439.5449.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig195439.5449.1
Unique Name	mRNA_H-elongata_contig195439.5449.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 5.240e-48
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 1

Query:    4 YIVMLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTK 351
            Y+ MLANAP+SF+ GLQGL A STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DN   LH  GNRS+S R KHIALR+FF++ELV EGKISIHY  TED LA +GTK
Sbjct:   78 YLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTK 193

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BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.590e-46
Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 1

Query:    4 YIVMLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTK 351
            Y+ MLANAP+SF+ GLQGL A STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DN   LH  GNRS+S R KHIALR+FF++ELV EGKISIHY  TED LAD+GTK
Sbjct:  303 YLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTK 418

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BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 9.480e-46
Identity = 82/116 (70.69%), Postives = 96/116 (82.76%), Query Frame = 1

Query:    4 YIVMLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTK 351
            Y+ MLANAP+SF+ GLQGL A STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DN   LH  GNRS+S R KHIALR+FF++ELV EGKISIHYV+TED LAD+GTK
Sbjct:  863 YLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTK 978

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BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 8.770e-45
Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = 1

Query:    4 YIVMLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTK 351
            Y+ MLANAP+SF+ GLQGL A STMEAELVA+AL MKEAVFCSNM+ ELG  + F  +P+Y DN   LH  GNRS+S R KHIALR+FF++ELV EGKISIHYV TED LAD+GTK
Sbjct:  524 YLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTK 639

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BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.250e-42
Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = 1

Query:    4 YIVMLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTK 351
            Y+ +LANAP+SF+ GLQGL A STMEAELVA+AL M EAVF SNM+ ELGF + F  +P+Y DN   LH  GNRS+S R KHIALR+FF++ELV EGKISIHYV TED LAD+GTK
Sbjct: 1532 YLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTK 1647

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BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.750e-41
Identity = 72/116 (62.07%), Postives = 91/116 (78.45%), Query Frame = 1

Query:    4 YIVMLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTK 351
            Y+ ML NAP+SFK G+QG  A STMEAEL+A+AL MKEAVFCSN++ ELG  + F  VPLY DN   LH  GNRS+S R KHIALR+F+++EL+ EG+ISIHY+ T+  +AD+GTK
Sbjct: 1033 YLTMLGNAPVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTK 1148

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BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 4.440e-40
Identity = 73/116 (62.93%), Postives = 94/116 (81.03%), Query Frame = 1

Query:    4 YIVMLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTK 351
            YI+M++ AP+SFK GLQ L A ST+EAELVAAAL MKE +FC+NM+ ELGF   F S PLYI N   LHV GN+++S R KH+ALR+F+++E+V+EG+ISIHY+ TED LAD+GTK
Sbjct:  557 YIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTK 671

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BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 7.440e-40
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 1

Query:   13 MLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTK 351
            ML +A ++FK GLQ L AQSTMEAELVAAAL MKEAVFCSN++ ELGF + F  VPLY DN   LH  GNRS+S R KHIALR+FF+++LV EGKI IH+V T+   AD+GTK
Sbjct:  224 MLYDALMAFKSGLQSLTAQSTMEAELVAAALAMKEAVFCSNILTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTK 336

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BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.890e-39
Identity = 74/116 (63.79%), Postives = 89/116 (76.72%), Query Frame = 1

Query:    4 YIVMLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTK 351
            Y  ML +AP+S K G+QG  A STMEAEL+A+AL MKEAVFCSNM+ ELGF + F  VPLY DN   LH  GNRS+S R  HIALR+F+++ELV EG+ISIHYV T+  LAD+GTK
Sbjct: 1061 YWTMLEHAPVSLKSGIQGPAAISTMEAELIASALAMKEAVFCSNMLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTK 1176

[Close]

BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.430e-37
Identity = 71/116 (61.21%), Postives = 87/116 (75.00%), Query Frame = 1

Query:    4 YIVMLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHYVKTEDQLADLGTK 351
            ++ ML +AP++FK GLQ L  QSTME ELVAAAL +KEAVFCSN++ ELGF +    VPLY DN   LH  GNRSYS   KHIALR+FF++ELV EG+I+IHYV  +   AD+GTK
Sbjct:  586 HLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTK 701

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot

BLAST of mRNA_H-elongata_contig195439.5449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KMK0_9PHAE	5.240e-48	68.97	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5U2_9PHAE	1.590e-46	69.83	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KNH5_9PHAE	9.480e-46	70.69	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JME8_9PHAE	8.770e-45	69.83	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KJH6_9PHAE	1.250e-42	68.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K129_9PHAE	2.750e-41	62.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBU1_9PHAE	4.440e-40	62.93	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5J9N2_9PHAE	7.440e-40	65.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBV6_9PHAE	2.890e-39	63.79	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JG39_9PHAE	2.430e-37	61.21	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig195439	contig	H-elongata_contig195439:797..1147 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Fungi
Seed ortholog score	82.0
Seed ortholog evalue	1.9e-13
Seed eggNOG ortholog	1108849.XP_002556819.1
EggNOG free text desc.	Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs	20PDK@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.	L
Best tax level	Eurotiomycetes
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	351
Cds size	339
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930110.7393603-UTR-H-elongata_contig195439:796..808	1622930110.7393603-UTR-H-elongata_contig195439:796..808	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig195439 797..808 +
1691679284.5802758-UTR-H-elongata_contig195439:796..808	1691679284.5802758-UTR-H-elongata_contig195439:796..808	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig195439 797..808 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930110.7639213-CDS-H-elongata_contig195439:808..1147	1622930110.7639213-CDS-H-elongata_contig195439:808..1147	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig195439 809..1147 +
1691679284.6012144-CDS-H-elongata_contig195439:808..1147	1691679284.6012144-CDS-H-elongata_contig195439:808..1147	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig195439 809..1147 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig195439.5449.1	prot_H-elongata_contig195439.5449.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig195439 809..1147 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig195439:797..1147+
coding sequence from alignment at H-elongata_contig195439:797..1147+

protein sequence of mRNA_H-elongata_contig195439.5449.1

>prot_H-elongata_contig195439.5449.1 ID=prot_H-elongata_contig195439.5449.1|Name=mRNA_H-elongata_contig195439.5449.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MLANAPISFKVGLQGLIAQSTMEAELVAAALTMKEAVFCSNMILELGFDE
SFGSVPLYIDNMLALHVAGNRSYSPRAKHIALRYFFVQELVEEGKISIHY
VKTEDQLADLGTK

mRNA from alignment at H-elongata_contig195439:797..1147+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig195439.5449.1 ID=mRNA_H-elongata_contig195439.5449.1|Name=mRNA_H-elongata_contig195439.5449.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig195439:797..1147+ (Himanthalia elongata Himel1 dioecious)
TGGTACATCGTGATGCTGGCCAACGCCCCGATCAGCTTCAAAGTGGGACT
GCAGGGGCTGATCGCACAGTCCACGATGGAGGCAGAGCTCGTGGCGGCAG
CTCTGACAATGAAGGAGGCGGTGTTCTGCTCCAACATGATTCTGGAGCTT
GGCTTCGATGAGAGCTTCGGCAGCGTGCCGCTGTACATTGACAACATGTT
GGCACTGCACGTCGCCGGCAACCGCTCCTACAGCCCTCGTGCAAAGCACA
TCGCGCTGAGGTATTTTTTCGTGCAAGAGCTGGTAGAGGAGGGCAAGATC
AGCATCCACTACGTCAAGACCGAGGATCAACTGGCGGACTTGGGCACCAA
G

Coding sequence (CDS) from alignment at H-elongata_contig195439:797..1147+

>mRNA_H-elongata_contig195439.5449.1 ID=mRNA_H-elongata_contig195439.5449.1|Name=mRNA_H-elongata_contig195439.5449.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig195439:797..1147+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGCCAACGCCCCGATCAGCTTCAAAGTGGGACTGCAGGGGCTGAT
CGCACAGTCCACGATGGAGGCAGAGCTCGTGGCGGCAGCTCTGACAATGA
AGGAGGCGGTGTTCTGCTCCAACATGATTCTGGAGCTTGGCTTCGATGAG
AGCTTCGGCAGCGTGCCGCTGTACATTGACAACATGTTGGCACTGCACGT
CGCCGGCAACCGCTCCTACAGCCCTCGTGCAAAGCACATCGCGCTGAGGT
ATTTTTTCGTGCAAGAGCTGGTAGAGGAGGGCAAGATCAGCATCCACTAC
GTCAAGACCGAGGATCAACTGGCGGACTTGGGCACCAAGATGCTGGCCAA
CGCCCCGATCAGCTTCAAAGTGGGACTGCAGGGGCTGATCGCACAGTCCA
CGATGGAGGCAGAGCTCGTGGCGGCAGCTCTGACAATGAAGGAGGCGGTG
TTCTGCTCCAACATGATTCTGGAGCTTGGCTTCGATGAGAGCTTCGGCAG
CGTGCCGCTGTACATTGACAACATGTTGGCACTGCACGTCGCCGGCAACC
GCTCCTACAGCCCTCGTGCAAAGCACATCGCGCTGAGGTATTTTTTCGTG
CAAGAGCTGGTAGAGGAGGGCAAGATCAGCATCCACTACGTCAAGACCGA
GGATCAACTGGCGGACTTGGGCACCAAG