mRNA_H-elongata_contig19541.5446.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19541.5446.1
Unique NamemRNA_H-elongata_contig19541.5446.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19541.5446.1 vs. uniprot
Match: D8LTK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK0_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 2.240e-86
Identity = 168/371 (45.28%), Postives = 214/371 (57.68%), Query Frame = 1 
Query:  148 ISPSRVRTEPKRSVRGPRGARDVPNGAFAKRGVLGRLCVSPWVIEEEEEKAQRAISHRKAISEDPQVFRQKRPEGGSLDYVEEMHNVKQLLDKIHPIRDESCPPKSGFSYRRVCHDTEPPGYYDTCTCLNAIYPRTVGYSPGHIRTMAPTPCLTWGGRESAKANLKWGDGDGSSLGAVEACLSGVSR-GDSSFRFHSDPSLSSSYNIYLTSLACKVYTMHSSPRVLQLAWTCALGSQALSIRGGGPDPPPYWD----------TSSPPW---AMRPFLSSCDHLGRSMSSAILSRATSGLKPQHFDTSQRRHEYSCALAMKRHARLSREAGELISTELEKEGREHAAEGQQGISLFDGNLKNILKQKRKYL 1218
            + PS+VRT+P+RSVRGPRG  ++  G F K GVLG L VSPWV+EEE E+AQR +SH+  IS +P VFR+KR EGG LDY EEMH VK+ LDKIHPIRDESCPPKSGFSY                                                ES++ +++WG+G G SLG V+ACL G SR G S+ R      L S  + +  S   + +T   SPR              + +R       P W           T+S  +   A+RPF SSCD LGR MS  +LSR+T+GLKPQ FDT+QRR EY+CAL  +R AR SREAG +++ +LEKE R++A E ++GI  F+G+LK IL QK KYL
Sbjct:    2 MEPSKVRTKPRRSVRGPRGVPNIEPGTFKKPGVLGGLNVSPWVVEEEVERAQRVLSHKATISTNPVVFRRKREEGGLLDYAEEMHAVKRFLDKIHPIRDESCPPKSGFSYS-----------------------------------------------ESSRVSMEWGEGTGGSLGTVKACLRGTSRCGGSATRPSRSCPLPSQRSRFGQSWETEDFTDEGSPRNNNQGQEADRDGSGIEVR-------PMWSRQGLRATRPGTTSSSFQGPALRPFSSSCDQLGRPMSREVLSRSTAGLKPQQFDTTQRRSEYTCALLGRREARQSREAGRVVAAQLEKERRKNATEEREGIDKFEGSLKEILAQKWKYL 318
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BLAST of mRNA_H-elongata_contig19541.5446.1 vs. uniprot
Match: A0A6H5KWZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.130e-28
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:  922 AMRPFLSSCDHLGRSMSSAILSRATSGLKPQHFDTSQRRHEYSCALAMKRHARLSREAGELISTELEKEGREHAAEGQQGISLFDGNLKNILKQKRKYL 1218
            A+RPF SS D LGR MS A+LSR+T+GLKPQ FDT+QRR EY+CAL  +R AR SREAG +++ +LEKE R++A E ++GI  F+G+LK IL QK KYL
Sbjct:   23 ALRPFSSSRDQLGRPMSRAVLSRSTAGLKPQQFDTTQRRSEYTCALLGRREARRSREAGRIVAEQLEKERRKNATEEREGIEKFEGSLKEILAQKWKYL 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19541.5446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTK0_ECTSI2.240e-8645.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWZ1_9PHAE1.130e-2861.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19541contigH-elongata_contig19541:1360..3730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005890.1
Exons6
Model size1221
Cds size1221
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19541.5446.1prot_H-elongata_contig19541.5446.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19541 1360..3730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930110.3301525-CDS-H-elongata_contig19541:1359..14611622930110.3301525-CDS-H-elongata_contig19541:1359..1461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 1360..1461 -
1691679284.3573363-CDS-H-elongata_contig19541:1359..14611691679284.3573363-CDS-H-elongata_contig19541:1359..1461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 1360..1461 -
1622930110.3488479-CDS-H-elongata_contig19541:1869..21531622930110.3488479-CDS-H-elongata_contig19541:1869..2153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 1870..2153 -
1691679284.3674116-CDS-H-elongata_contig19541:1869..21531691679284.3674116-CDS-H-elongata_contig19541:1869..2153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 1870..2153 -
1622930110.3662956-CDS-H-elongata_contig19541:2191..22851622930110.3662956-CDS-H-elongata_contig19541:2191..2285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 2192..2285 -
1691679284.387953-CDS-H-elongata_contig19541:2191..22851691679284.387953-CDS-H-elongata_contig19541:2191..2285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 2192..2285 -
1622930110.3829832-CDS-H-elongata_contig19541:2488..27501622930110.3829832-CDS-H-elongata_contig19541:2488..2750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 2489..2750 -
1691679284.4015815-CDS-H-elongata_contig19541:2488..27501691679284.4015815-CDS-H-elongata_contig19541:2488..2750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 2489..2750 -
1622930110.4001157-CDS-H-elongata_contig19541:2996..31391622930110.4001157-CDS-H-elongata_contig19541:2996..3139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 2997..3139 -
1691679284.4232407-CDS-H-elongata_contig19541:2996..31391691679284.4232407-CDS-H-elongata_contig19541:2996..3139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 2997..3139 -
1622930110.4167247-CDS-H-elongata_contig19541:3394..37301622930110.4167247-CDS-H-elongata_contig19541:3394..3730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 3395..3730 -
1691679284.4347367-CDS-H-elongata_contig19541:3394..37301691679284.4347367-CDS-H-elongata_contig19541:3394..3730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19541 3395..3730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19541.5446.1

>prot_H-elongata_contig19541.5446.1 ID=prot_H-elongata_contig19541.5446.1|Name=mRNA_H-elongata_contig19541.5446.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=407bp
MQVPVIDHCAKRIISPGTLAQKNTDHASPQIHKYPPAQSLCLRGHTPTTI
SPSRVRTEPKRSVRGPRGARDVPNGAFAKRGVLGRLCVSPWVIEEEEEKA
QRAISHRKAISEDPQVFRQKRPEGGSLDYVEEMHNVKQLLDKIHPIRDES
CPPKSGFSYRRVCHDTEPPGYYDTCTCLNAIYPRTVGYSPGHIRTMAPTP
CLTWGGRESAKANLKWGDGDGSSLGAVEACLSGVSRGDSSFRFHSDPSLS
SSYNIYLTSLACKVYTMHSSPRVLQLAWTCALGSQALSIRGGGPDPPPYW
DTSSPPWAMRPFLSSCDHLGRSMSSAILSRATSGLKPQHFDTSQRRHEYS
CALAMKRHARLSREAGELISTELEKEGREHAAEGQQGISLFDGNLKNILK
QKRKYL*
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mRNA from alignment at H-elongata_contig19541:1360..3730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19541.5446.1 ID=mRNA_H-elongata_contig19541.5446.1|Name=mRNA_H-elongata_contig19541.5446.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2371bp|location=Sequence derived from alignment at H-elongata_contig19541:1360..3730- (Himanthalia elongata Himel1 dioecious)
ATGCAGGTACCGGTCATCGATCACTGCGCCAAGAGGATCATCTCCCCTGG
AACGCTTGCTCAAAAGAACACCGACCACGCTTCACCTCAGATCCATAAGT
ACCCTCCCGCACAATCTCTGTGCCTGCGTGGGCACACACCAACAACTATC
TCGCCTTCGAGAGTGAGGACGGAACCGAAACGATCGGTTCGAGGGCCTAG
AGGAGCAAGGGATGTTCCAAACGGTGCATTTGCGAAGCGCGGTGTGCTGG
GGCGGTTATGTGTGAGCCCCTGGGTGATCGAGGAAGAAGAGGAAAAGGCG
CAGCGAGCCATATCCCACAGAAAAGCTATATCAGAAGTGAGCGCGGGCTG
ACGGTCCAAACAGGGAGCCAATCAAATGATTGGAAAGGGACAAGGAAAAC
CCCCCAGAAATATTACGTCGATCACCAGGGTCACATCGTACCTTGCAATG
AGCCTACCATACCTACACCGAGCTTGTCTCCCACCCTCATTATGAATATT
TCCGAGTTCAGGGAAACACCATACGCCTTGGTGCACCCTGCCGAGATCCG
ACCGAGGAAGCGACTGTTTGCGTTCCGAACAAATCCTACAGGATCCACAG
GTTTTTCGACAAAAGCGTCCAGAGGGCGGGTCGTTGGACTACGTGGAAGA
AATGCACAACGTGAAGCAGCTCCTGGACAAGATCCACCCAATTCGGGACG
AGTCTTGCCCTCCGAAGTCGGGGTTTAGCTACAGGTGTGAGCAAACACAA
CCGCAGAGCTTACCCTACACCCTTGCCGACATTTTTTTTGTGATGGAAGA
ATACGCCCTCGATTAGTATCAGTGGAAGAGTCCTCGAGCAACGTCAAGGG
ACAAATCACTTGTGGATCAACGTTTCCTTGATGCACGGTAACCCTGCCAA
GATCATCAGTCTTACGTTTTGATGGTGCACGCTCTCAACCCTCTGGTTGC
CGTTCGCCATGTGGCGATCGCAACTCGAAGGAGGGTTTGCCACGACACCG
AACCGCCGGGCTACTATGATACATGTACGTGTCTGAACGCCATCTACCCA
CGAACTGTCGGCTATTCGCCGGGGCACATTCGGACAATGGCACCCACGCC
TTGCTTGACTTGGGGGGGCAGGGAGAGTGCAAAGGCTAACCTCAAGTGGG
GAGACGGTGACGGTAGTTCCCTTGGAGCGGTAGAAGCTTGTCTAAGTGGA
GTCAGCAGGGGTGACAGCAGCTTCAGGTTTCATTCTGACCCTGTGAGACC
ACTAGATTTTTGTTTTTATATATAGAGATATATATCGTTACCCCCGACCC
CCACCTACTTTCTATTATGCCGAAGTTTGGGCTTCAATGCGCCACTTTCC
TGCTTTTTGCGAACGTTTCTCGAATGTTGTTGACGATTTTCGGTAACCTG
AACCAGCTTCGCGCAAAAACTATCCACCATACGCTCACTGCACAGAGTCT
GAGCTCCAGCTATAATATCTATCTGACATCCCTTGCTTGCAAAGTTTATA
CGATGCATAGCAGCCCGCGCGTACTACAGCTAGCGTGGAGTTAAGGACAT
GATTCATCACGTAACTTCGCTCACTAGCATGCGCGTTGGGTTCACAGGCG
TTATCAATACGGGGGGGTGGTCCAGACCCGCCCCCGTACTGGGACACGTC
ATCCCCGCCGTGGGCCATGCGGCCCTTCTTGTCCTCCTGCGACCACCTGG
GGCGTTCCATGTCCAGCGCTATCTTATCCCGCGCCACTTCTGGCCTCAAG
CCACAGCATTTTGATACCTCGCAGAGGCGGCACGAGTACTCGTGTGCACT
CGCAATGAAAAGGCACGCGCGGTTATCGAGAGAGGCAGGGGAATTGATCT
CCACAGAACTGGTAAGCGTGGCGTCGTCCGACGATGGATAGGTGTATCGA
TGTCGGGAAGATTTCTATTCGTTCGTTTGGAATCAATCGTACTCTTCTAA
CAAGGTTGGGATACCGCGCGAGTCTCGACGATTCAACAACAGACCCACGT
TTGCTCCACCGCACGGAAATTGCCACTTTCTCACATTTCAGTCGGACCAC
AGATCCTACCGCGGCGGAGAAAAGACCGGAGGCTATATATCTACTCTCCC
TGATGGTAGCATTTACTGAGTTCAACTATGAATTTCAGCCAAGACACTAC
TACGAACGAGACATGCTTTGCCACCCTTAAGCCAGCCTAAACATACGTGA
CTGTAAAACCAACGCTCAAGTTATCCTCGACGTGCGATTTATTTTCGGAT
TTGGCGATGACGTTTGCAGGAGAAGGAGGGAAGAGAGCATGCTGCTGAAG
GACAGCAGGGGATCAGTCTTTTCGACGGGAACTTGAAGAACATATTGAAA
CAGAAGCGGAAATACCTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig19541:1360..3730-

>mRNA_H-elongata_contig19541.5446.1 ID=mRNA_H-elongata_contig19541.5446.1|Name=mRNA_H-elongata_contig19541.5446.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2442bp|location=Sequence derived from alignment at H-elongata_contig19541:1360..3730- (Himanthalia elongata Himel1 dioecious)
ATGCAGGTACCGGTCATCGATCACTGCGCCAAGAGGATCATCTCCCCTGG
AACGCTTGCTCAAAAGAACACCGACCACGCTTCACCTCAGATCCATAAGT
ACCCTCCCGCACAATCTCTGTGCCTGCGTGGGCACACACCAACAACTATC
TCGCCTTCGAGAGTGAGGACGGAACCGAAACGATCGGTTCGAGGGCCTAG
AGGAGCAAGGGATGTTCCAAACGGTGCATTTGCGAAGCGCGGTGTGCTGG
GGCGGTTATGTGTGAGCCCCTGGGTGATCGAGGAAGAAGAGGAAAAGGCG
CAGCGAGCCATATCCCACAGAAAAGCTATATCAGAAATGCAGGTACCGGT
CATCGATCACTGCGCCAAGAGGATCATCTCCCCTGGAACGCTTGCTCAAA
AGAACACCGACCACGCTTCACCTCAGATCCATAAGTACCCTCCCGCACAA
TCTCTGTGCCTGCGTGGGCACACACCAACAACTATCTCGCCTTCGAGAGT
GAGGACGGAACCGAAACGATCGGTTCGAGGGCCTAGAGGAGCAAGGGATG
TTCCAAACGGTGCATTTGCGAAGCGCGGTGTGCTGGGGCGGTTATGTGTG
AGCCCCTGGGTGATCGAGGAAGAAGAGGAAAAGGCGCAGCGAGCCATATC
CCACAGAAAAGCTATATCAGAAGATCCACAGGTTTTTCGACAAAAGCGTC
CAGAGGGCGGGTCGTTGGACTACGTGGAAGAAATGCACAACGTGAAGCAG
CTCCTGGACAAGATCCACCCAATTCGGGACGAGTCTTGCCCTCCGAAGTC
GGGGTTTAGCTACAGGATCCACAGGTTTTTCGACAAAAGCGTCCAGAGGG
CGGGTCGTTGGACTACGTGGAAGAAATGCACAACGTGAAGCAGCTCCTGG
ACAAGATCCACCCAATTCGGGACGAGTCTTGCCCTCCGAAGTCGGGGTTT
AGCTACAGGAGGGTTTGCCACGACACCGAACCGCCGGGCTACTATGATAC
ATGTACGTGTCTGAACGCCATCTACCCACGAACTGTCGGCTATTCGCCGG
GGCACATTCGGACAATGGCACCCACGCCTTGCTTGACTTGGGGGGGCAGG
GAGAGTGCAAAGGCTAACCTCAAGTGGGGAGACGGTGACGGTAGTTCCCT
TGGAGCGGTAGAAGCTTGTCTAAGTGGAGTCAGCAGGGGTGACAGCAGCT
TCAGGTTTCATTCTGACCCTGAGGGTTTGCCACGACACCGAACCGCCGGG
CTACTATGATACATGTACGTGTCTGAACGCCATCTACCCACGAACTGTCG
GCTATTCGCCGGGGCACATTCGGACAATGGCACCCACGCCTTGCTTGACT
TGGGGGGGCAGGGAGAGTGCAAAGGCTAACCTCAAGTGGGGAGACGGTGA
CGGTAGTTCCCTTGGAGCGGTAGAAGCTTGTCTAAGTGGAGTCAGCAGGG
GTGACAGCAGCTTCAGGTTTCATTCTGACCCTAGTCTGAGCTCCAGCTAT
AATATCTATCTGACATCCCTTGCTTGCAAAGTTTATACGATGCATAGCAG
CCCGCGCGTACTACAGCTAGCGTGGAAGTCTGAGCTCCAGCTATAATATC
TATCTGACATCCCTTGCTTGCAAAGTTTATACGATGCATAGCAGCCCGCG
CGTACTACAGCTAGCGTGGACATGCGCGTTGGGTTCACAGGCGTTATCAA
TACGGGGGGGTGGTCCAGACCCGCCCCCGTACTGGGACACGTCATCCCCG
CCGTGGGCCATGCGGCCCTTCTTGTCCTCCTGCGACCACCTGGGGCGTTC
CATGTCCAGCGCTATCTTATCCCGCGCCACTTCTGGCCTCAAGCCACAGC
ATTTTGATACCTCGCAGAGGCGGCACGAGTACTCGTGTGCACTCGCAATG
AAAAGGCACGCGCGGTTATCGAGAGAGGCAGGGGAATTGATCTCCACAGA
ACTGCATGCGCGTTGGGTTCACAGGCGTTATCAATACGGGGGGGTGGTCC
AGACCCGCCCCCGTACTGGGACACGTCATCCCCGCCGTGGGCCATGCGGC
CCTTCTTGTCCTCCTGCGACCACCTGGGGCGTTCCATGTCCAGCGCTATC
TTATCCCGCGCCACTTCTGGCCTCAAGCCACAGCATTTTGATACCTCGCA
GAGGCGGCACGAGTACTCGTGTGCACTCGCAATGAAAAGGCACGCGCGGT
TATCGAGAGAGGCAGGGGAATTGATCTCCACAGAACTGGAGAAGGAGGGA
AGAGAGCATGCTGCTGAAGGACAGCAGGGGATCAGTCTTTTCGACGGGAA
CTTGAAGAACATATTGAAACAGAAGCGGAAATACCTTTAGGAGAAGGAGG
GAAGAGAGCATGCTGCTGAAGGACAGCAGGGGATCAGTCTTTTCGACGGG
AACTTGAAGAACATATTGAAACAGAAGCGGAAATACCTTTAG
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