prot_H-elongata_contig19541.5446.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19541.5446.1
Unique Nameprot_H-elongata_contig19541.5446.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length407
Homology
BLAST of mRNA_H-elongata_contig19541.5446.1 vs. uniprot
Match: D8LTK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK0_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 2.240e-86
Identity = 168/371 (45.28%), Postives = 214/371 (57.68%), Query Frame = 0
Query:   50 ISPSRVRTEPKRSVRGPRGARDVPNGAFAKRGVLGRLCVSPWVIEEEEEKAQRAISHRKAISEDPQVFRQKRPEGGSLDYVEEMHNVKQLLDKIHPIRDESCPPKSGFSYRRVCHDTEPPGYYDTCTCLNAIYPRTVGYSPGHIRTMAPTPCLTWGGRESAKANLKWGDGDGSSLGAVEACLSGVSR-GDSSFRFHSDPSLSSSYNIYLTSLACKVYTMHSSPRVLQLAWTCALGSQALSIRGGGPDPPPYWD----------TSSPPW---AMRPFLSSCDHLGRSMSSAILSRATSGLKPQHFDTSQRRHEYSCALAMKRHARLSREAGELISTELEKEGREHAAEGQQGISLFDGNLKNILKQKRKYL 406
            + PS+VRT+P+RSVRGPRG  ++  G F K GVLG L VSPWV+EEE E+AQR +SH+  IS +P VFR+KR EGG LDY EEMH VK+ LDKIHPIRDESCPPKSGFSY                                                ES++ +++WG+G G SLG V+ACL G SR G S+ R      L S  + +  S   + +T   SPR              + +R       P W           T+S  +   A+RPF SSCD LGR MS  +LSR+T+GLKPQ FDT+QRR EY+CAL  +R AR SREAG +++ +LEKE R++A E ++GI  F+G+LK IL QK KYL
Sbjct:    2 MEPSKVRTKPRRSVRGPRGVPNIEPGTFKKPGVLGGLNVSPWVVEEEVERAQRVLSHKATISTNPVVFRRKREEGGLLDYAEEMHAVKRFLDKIHPIRDESCPPKSGFSYS-----------------------------------------------ESSRVSMEWGEGTGGSLGTVKACLRGTSRCGGSATRPSRSCPLPSQRSRFGQSWETEDFTDEGSPRNNNQGQEADRDGSGIEVR-------PMWSRQGLRATRPGTTSSSFQGPALRPFSSSCDQLGRPMSREVLSRSTAGLKPQQFDTTQRRSEYTCALLGRREARQSREAGRVVAAQLEKERRKNATEEREGIDKFEGSLKEILAQKWKYL 318          
BLAST of mRNA_H-elongata_contig19541.5446.1 vs. uniprot
Match: A0A6H5KWZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.130e-28
Identity = 61/99 (61.62%), Postives = 78/99 (78.79%), Query Frame = 0
Query:  308 AMRPFLSSCDHLGRSMSSAILSRATSGLKPQHFDTSQRRHEYSCALAMKRHARLSREAGELISTELEKEGREHAAEGQQGISLFDGNLKNILKQKRKYL 406
            A+RPF SS D LGR MS A+LSR+T+GLKPQ FDT+QRR EY+CAL  +R AR SREAG +++ +LEKE R++A E ++GI  F+G+LK IL QK KYL
Sbjct:   23 ALRPFSSSRDQLGRPMSRAVLSRSTAGLKPQQFDTTQRRSEYTCALLGRREARRSREAGRIVAEQLEKERRKNATEEREGIEKFEGSLKEILAQKWKYL 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19541.5446.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTK0_ECTSI2.240e-8645.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWZ1_9PHAE1.130e-2861.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 93..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19541contigH-elongata_contig19541:1360..3730 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19541.5446.1mRNA_H-elongata_contig19541.5446.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19541 1360..3730 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19541.5446.1 ID=prot_H-elongata_contig19541.5446.1|Name=mRNA_H-elongata_contig19541.5446.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=407bp
MQVPVIDHCAKRIISPGTLAQKNTDHASPQIHKYPPAQSLCLRGHTPTTI
SPSRVRTEPKRSVRGPRGARDVPNGAFAKRGVLGRLCVSPWVIEEEEEKA
QRAISHRKAISEDPQVFRQKRPEGGSLDYVEEMHNVKQLLDKIHPIRDES
CPPKSGFSYRRVCHDTEPPGYYDTCTCLNAIYPRTVGYSPGHIRTMAPTP
CLTWGGRESAKANLKWGDGDGSSLGAVEACLSGVSRGDSSFRFHSDPSLS
SSYNIYLTSLACKVYTMHSSPRVLQLAWTCALGSQALSIRGGGPDPPPYW
DTSSPPWAMRPFLSSCDHLGRSMSSAILSRATSGLKPQHFDTSQRRHEYS
CALAMKRHARLSREAGELISTELEKEGREHAAEGQQGISLFDGNLKNILK
QKRKYL*
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