mRNA_H-elongata_contig195254.5441.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195254.5441.1
Unique NamemRNA_H-elongata_contig195254.5441.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A8F0JZG8_9PHAE (Ribosomal protein L3 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZG8_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 7.860e-54
Identity = 142/151 (94.04%), Postives = 144/151 (95.36%), Query Frame = 1
Query:    1 RITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 453
            RIT FNK ELGHL KNGLPPLSHLHEYKVLD ENYSLGQ XXXXXXXXXXXXXXXXX IGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KKITVSKLE+LGIDLKQNLLILKGS+PGKTGNLLNIVPAN
Sbjct:   46 RITNFNKAELGHLTKNGLPPLSHLHEYKVLDTENYSLGQIXXXXXXXXXXXXXXXXXSIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKITVSKLEVLGIDLKQNLLILKGSIPGKTGNLLNIVPAN 196          
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A0R6MC27_UNDPI (50S ribosomal protein L3, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6MC27_UNDPI)

HSP 1 Score: 147 bits (370), Expect = 7.340e-42
Identity = 124/151 (82.12%), Postives = 129/151 (85.43%), Query Frame = 1
Query:    1 RITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 453
            R     K ELGHLKKNGLPPLS L EYKV+D+ENYSLGQ  XXXXXXXXXXXXXX   IGKGFSG+ KRHKFKRGPMTH  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TVSKLEILGID KQNLLILKG+VPGK GNLLNIVP+N
Sbjct:   46 RTVNLKKAELGHLKKNGLPPLSDLCEYKVMDLENYSLGQVLXXXXXXXXXXXXXXGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGNVPGKPGNLLNIVPSN 196          
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A8F0JYJ1_9PHAE (Ribosomal protein L3 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYJ1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.040e-41
Identity = 109/147 (74.15%), Postives = 117/147 (79.59%), Query Frame = 1
Query:   13 FNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 453
              K ELGHLKKNGLPPLSHL EY+V + E+YSLGQ                   IGKGFSG+HKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AK ITVSKL+ILGIDLK NLLILKGSVPGK GNL+ I+P+N
Sbjct:   50 LKKAELGHLKKNGLPPLSHLCEYRVTEQEDYSLGQVLNVDHFQIGQFVNITGKSIGKGFSGNHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKTITVSKLKILGIDLKNNLLILKGSVPGKPGNLIKIIPSN 196          
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A8F0F776_9PHAE (Ribosomal protein L3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F776_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 8.390e-41
Identity = 123/150 (82.00%), Postives = 131/150 (87.33%), Query Frame = 1
Query:    1 RITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPA 450
            R ++F K ELGHLKKNGLPPL HL EYKVL  +NY +GQ  XXXXXXXXXXXXXX   IGKGFSG+HKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TVSKLEILGID KQNLLILKG+VPGK GNLLNI+P+
Sbjct:   46 RDSQFKKAELGHLKKNGLPPLYHLCEYKVLSTQNYCVGQKIXXXXXXXXXXXXXXGKSIGKGFSGNHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDYKQNLLILKGNVPGKPGNLLNIIPS 195          
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: D1GJT2_FUCVE (50S ribosomal protein L3, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJT2_FUCVE)

HSP 1 Score: 137 bits (346), Expect = 4.490e-38
Identity = 100/151 (66.23%), Postives = 111/151 (73.51%), Query Frame = 1
Query:    1 RITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 453
            ++ K NK ELGHL KNGL PL +L EYKV D  NYSLGQ                   IGKGFSG+ KRH FKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXX      AKK+T+SKLEILGID K +LLILKGSVPGK+GNLLN+ P++
Sbjct:   57 QVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVINVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSD 207          
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A1L2F1Q4_9PHAE (Ribosomal protein L3 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1Q4_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 5.950e-36
Identity = 115/144 (79.86%), Postives = 124/144 (86.11%), Query Frame = 1
Query:   10 KFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNI 441
            +  K ELGHL KNGLPPL HL EY+V D+ NYSLGQ XXXXXXXXXXXXXXX   IGKGFSG+ KRHKFKRGPMTH   XXXXXXXXXXXXXXXXXXXXXXXXXXXX   ITVSK+++LGID KQNLLILKGSVPGK+GNLL+I
Sbjct:   61 RVKKAELGHLTKNGLPPLLHLREYRVPDLNNYSLGQMXXXXXXXXXXXXXXXGKSIGKGFSGNQKRHKFKRGPMTHGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITVSKVQVLGIDEKQNLLILKGSVPGKSGNLLSI 204          
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A8E6D6E5_9PHAE (50S ribosomal protein L3, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6E5_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.590e-32
Identity = 104/147 (70.75%), Postives = 115/147 (78.23%), Query Frame = 1
Query:    4 ITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIV 444
              KF + +LGHLKKN LP L HL EYK+L  E YS+GQ XXXXXXXXXXXXX     +GKGFSG+ KRH FKRGPMTH    XXXXXXXXXXXXXXXXXXXXXXXX    KK TVS +++LGID KQNLL+L+GSVPGK GNLL IV
Sbjct:   58 FNKFRRPQLGHLKKNKLPLLQHLGEYKILPTETYSVGQQXXXXXXXXXXXXXVTGKSLGKGFSGNQKRHHFKRGPMTHGSKNXXXXXXXXXXXXXXXXXXXXXXXXRLGGKKTTVSNVKVLGIDSKQNLLVLQGSVPGKPGNLLRIV 204          
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: D1J752_ECTSI (50S ribosomal protein L3, chloroplastic n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J752_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.250e-32
Identity = 114/146 (78.08%), Postives = 121/146 (82.88%), Query Frame = 1
Query:    7 TKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIV 444
            +KF+K ELGHL+KNGL P     EY+V   +NYSL  XXXXXXXXXXXXXXX    IGKGFSG+ KRHKFKRGPMTH  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TVSKLEILGID KQNLLILKGSVPGK GNLLNI+
Sbjct:   59 SKFSKAELGHLEKNGLSPXXXXXEYRVXXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNII 204          
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: B7T1Y4_VAULI (50S ribosomal protein L3, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Y4_VAULI)

HSP 1 Score: 120 bits (301), Expect = 1.890e-31
Identity = 105/150 (70.00%), Postives = 118/150 (78.67%), Query Frame = 1
Query:    4 ITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 453
            I K  K +LGHLKK GLPPL +L EY   DI  + +GQ    XXXXXXXXXXXXXXXIGKGFSG+ KR+ FKRGPMTH    XXXXXXXXXXXXXXXXXXXXXXXX    KK+T+ KL+ILGID ++NLL++KGSVPGK GN LNI PAN
Sbjct:   47 IRKLTKGQLGHLKKVGLPPLKYLTEYNFKDINEFYVGQILTIXXXXXXXXXXXXXXXIGKGFSGTCKRYNFKRGPMTHGSKSXXXXXXXXXXXXXXXXXXXXXXXXQHGNKKVTILKLKILGIDTEENLLVVKGSVPGKPGNFLNITPAN 196          
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A7S6ZPA7_9STRA (50S ribosomal protein L3, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.020e-30
Identity = 91/148 (61.49%), Postives = 102/148 (68.92%), Query Frame = 1
Query:   10 KFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 453
            K  K + GHLKK G  PL HL EYKV  I+ + LG+                   IGKGFSG+ KRH FKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXX       AKKIT+SKL I+GID  +NLLI+KG+VPGK GNLLNIV +N
Sbjct:   60 KLTKPKHGHLKKVGCFPLYHLREYKVSKIDKFLLGETLTVDIFKIGQYVNISGQSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXKMAGQYGAKKITISKLRIIGIDKTRNLLIIKGNVPGKPGNLLNIVGSN 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JZG8_9PHAE7.860e-5494.04Ribosomal protein L3 n=1 Tax=Desmarestia aculeata ... [more]
A0A0R6MC27_UNDPI7.340e-4282.1250S ribosomal protein L3, chloroplastic n=28 Tax=L... [more]
A0A8F0JYJ1_9PHAE1.040e-4174.15Ribosomal protein L3 n=1 Tax=Chorda asiatica TaxID... [more]
A0A8F0F776_9PHAE8.390e-4182.00Ribosomal protein L3 n=1 Tax=Protohalopteris sp. T... [more]
D1GJT2_FUCVE4.490e-3866.2350S ribosomal protein L3, chloroplastic n=3 Tax=Fu... [more]
A0A1L2F1Q4_9PHAE5.950e-3679.86Ribosomal protein L3 n=1 Tax=Coccophora langsdorfi... [more]
A0A8E6D6E5_9PHAE1.590e-3270.7550S ribosomal protein L3, chloroplastic n=1 Tax=Is... [more]
D1J752_ECTSI2.250e-3278.0850S ribosomal protein L3, chloroplastic n=9 Tax=Ec... [more]
B7T1Y4_VAULI1.890e-3170.0050S ribosomal protein L3, chloroplastic n=1 Tax=Va... [more]
A0A7S6ZPA7_9STRA2.020e-3061.4950S ribosomal protein L3, chloroplastic n=1 Tax=Sc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195254contigH-elongata_contig195254:49..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue7.7e-26
Seed eggNOG ortholog2880.D1J752
Preferred namerpl3
KEGG koko:K02906
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0087@1,KOG3141@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930109.909367-CDS-H-elongata_contig195254:48..5041622930109.909367-CDS-H-elongata_contig195254:48..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195254 49..504 +
1691679284.1828058-CDS-H-elongata_contig195254:48..5041691679284.1828058-CDS-H-elongata_contig195254:48..504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195254 49..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195254.5441.1prot_H-elongata_contig195254.5441.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195254 49..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195254.5441.1

>prot_H-elongata_contig195254.5441.1 ID=prot_H-elongata_contig195254.5441.1|Name=mRNA_H-elongata_contig195254.5441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
RITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQIINVNSFEIGQ
FVNVTGKSIGKGFSGSHKRHKFKRGPMTHGSKNHRAPGSIGPGTTPGRVF
PGKLMPGQLGAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPA
N*
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mRNA from alignment at H-elongata_contig195254:49..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195254.5441.1 ID=mRNA_H-elongata_contig195254.5441.1|Name=mRNA_H-elongata_contig195254.5441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at H-elongata_contig195254:49..504+ (Himanthalia elongata Himel1 dioecious)
CGAATTACAAAGTTTAACAAAGTAGAATTAGGTCACTTAAAAAAAAATGG ATTACCACCTTTATCTCATTTACATGAATATAAAGTTCTAGATATAGAAA ATTATTCTTTAGGACAAATAATAAACGTTAATTCTTTTGAGATTGGACAG TTTGTTAATGTTACGGGAAAATCAATAGGGAAAGGTTTTAGTGGAAGTCA TAAACGACATAAATTTAAACGTGGACCTATGACTCATGGATCAAAAAATC ATAGAGCTCCAGGTTCAATAGGACCAGGAACTACACCAGGTCGAGTATTT CCAGGTAAACTTATGCCTGGACAATTAGGAGCAAAAAAAATTACAGTATC CAAATTAGAAATTTTAGGTATCGATCTTAAACAAAATCTTCTAATTTTAA AAGGTAGTGTTCCTGGAAAGACTGGAAATTTACTAAATATTGTTCCTGCA AATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig195254:49..504+

>mRNA_H-elongata_contig195254.5441.1 ID=mRNA_H-elongata_contig195254.5441.1|Name=mRNA_H-elongata_contig195254.5441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig195254:49..504+ (Himanthalia elongata Himel1 dioecious)
CGAATTACAAAGTTTAACAAAGTAGAATTAGGTCACTTAAAAAAAAATGG
ATTACCACCTTTATCTCATTTACATGAATATAAAGTTCTAGATATAGAAA
ATTATTCTTTAGGACAAATAATAAACGTTAATTCTTTTGAGATTGGACAG
TTTGTTAATGTTACGGGAAAATCAATAGGGAAAGGTTTTAGTGGAAGTCA
TAAACGACATAAATTTAAACGTGGACCTATGACTCATGGATCAAAAAATC
ATAGAGCTCCAGGTTCAATAGGACCAGGAACTACACCAGGTCGAGTATTT
CCAGGTAAACTTATGCCTGGACAATTAGGAGCAAAAAAAATTACAGTATC
CAAATTAGAAATTTTAGGTATCGATCTTAAACAAAATCTTCTAATTTTAA
AAGGTAGTGTTCCTGGAAAGACTGGAAATTTACTAAATATTGTTCCTGCA
AATTAACGAATTACAAAGTTTAACAAAGTAGAATTAGGTCACTTAAAAAA
AAATGGATTACCACCTTTATCTCATTTACATGAATATAAAGTTCTAGATA
TAGAAAATTATTCTTTAGGACAAATAATAAACGTTAATTCTTTTGAGATT
GGACAGTTTGTTAATGTTACGGGAAAATCAATAGGGAAAGGTTTTAGTGG
AAGTCATAAACGACATAAATTTAAACGTGGACCTATGACTCATGGATCAA
AAAATCATAGAGCTCCAGGTTCAATAGGACCAGGAACTACACCAGGTCGA
GTATTTCCAGGTAAACTTATGCCTGGACAATTAGGAGCAAAAAAAATTAC
AGTATCCAAATTAGAAATTTTAGGTATCGATCTTAAACAAAATCTTCTAA
TTTTAAAAGGTAGTGTTCCTGGAAAGACTGGAAATTTACTAAATATTGTT
CCTGCAAATTAA
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