prot_H-elongata_contig195254.5441.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig195254.5441.1
Unique Name	prot_H-elongata_contig195254.5441.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	152

Homology

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BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A8F0JZG8_9PHAE (Ribosomal protein L3 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZG8_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 7.860e-54
Identity = 142/151 (94.04%), Postives = 144/151 (95.36%), Query Frame = 0

Query:    1 RITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 151
            RIT FNK ELGHL KNGLPPLSHLHEYKVLD ENYSLGQ XXXXXXXXXXXXXXXXX IGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KKITVSKLE+LGIDLKQNLLILKGS+PGKTGNLLNIVPAN
Sbjct:   46 RITNFNKAELGHLTKNGLPPLSHLHEYKVLDTENYSLGQIXXXXXXXXXXXXXXXXXSIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKITVSKLEVLGIDLKQNLLILKGSIPGKTGNLLNIVPAN 196

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BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A0R6MC27_UNDPI (50S ribosomal protein L3, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6MC27_UNDPI)

HSP 1 Score: 147 bits (370), Expect = 7.340e-42
Identity = 124/151 (82.12%), Postives = 129/151 (85.43%), Query Frame = 0

Query:    1 RITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 151
            R     K ELGHLKKNGLPPLS L EYKV+D+ENYSLGQ  XXXXXXXXXXXXXX   IGKGFSG+ KRHKFKRGPMTH  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TVSKLEILGID KQNLLILKG+VPGK GNLLNIVP+N
Sbjct:   46 RTVNLKKAELGHLKKNGLPPLSDLCEYKVMDLENYSLGQVLXXXXXXXXXXXXXXGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGNVPGKPGNLLNIVPSN 196

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BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A8F0JYJ1_9PHAE (Ribosomal protein L3 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYJ1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.040e-41
Identity = 109/147 (74.15%), Postives = 117/147 (79.59%), Query Frame = 0

Query:    5 FNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 151
              K ELGHLKKNGLPPLSHL EY+V + E+YSLGQ                   IGKGFSG+HKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AK ITVSKL+ILGIDLK NLLILKGSVPGK GNL+ I+P+N
Sbjct:   50 LKKAELGHLKKNGLPPLSHLCEYRVTEQEDYSLGQVLNVDHFQIGQFVNITGKSIGKGFSGNHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKTITVSKLKILGIDLKNNLLILKGSVPGKPGNLIKIIPSN 196

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BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A8F0F776_9PHAE (Ribosomal protein L3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F776_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 8.390e-41
Identity = 123/150 (82.00%), Postives = 131/150 (87.33%), Query Frame = 0

Query:    1 RITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPA 150
            R ++F K ELGHLKKNGLPPL HL EYKVL  +NY +GQ  XXXXXXXXXXXXXX   IGKGFSG+HKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TVSKLEILGID KQNLLILKG+VPGK GNLLNI+P+
Sbjct:   46 RDSQFKKAELGHLKKNGLPPLYHLCEYKVLSTQNYCVGQKIXXXXXXXXXXXXXXGKSIGKGFSGNHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDYKQNLLILKGNVPGKPGNLLNIIPS 195

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BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: D1GJT2_FUCVE (50S ribosomal protein L3, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJT2_FUCVE)

HSP 1 Score: 137 bits (346), Expect = 4.490e-38
Identity = 100/151 (66.23%), Postives = 111/151 (73.51%), Query Frame = 0

Query:    1 RITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 151
            ++ K NK ELGHL KNGL PL +L EYKV D  NYSLGQ                   IGKGFSG+ KRH FKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXX      AKK+T+SKLEILGID K +LLILKGSVPGK+GNLLN+ P++
Sbjct:   57 QVLKLNKAELGHLTKNGLLPLLYLREYKVPDPTNYSLGQVINVDYFQIGQFVNVSGKSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXMAGQLGAKKVTISKLEILGIDSKHSLLILKGSVPGKSGNLLNVSPSD 207

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BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A1L2F1Q4_9PHAE (Ribosomal protein L3 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1Q4_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 5.950e-36
Identity = 115/144 (79.86%), Postives = 124/144 (86.11%), Query Frame = 0

Query:    4 KFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNI 147
            +  K ELGHL KNGLPPL HL EY+V D+ NYSLGQ XXXXXXXXXXXXXXX   IGKGFSG+ KRHKFKRGPMTH   XXXXXXXXXXXXXXXXXXXXXXXXXXXX   ITVSK+++LGID KQNLLILKGSVPGK+GNLL+I
Sbjct:   61 RVKKAELGHLTKNGLPPLLHLREYRVPDLNNYSLGQMXXXXXXXXXXXXXXXGKSIGKGFSGNQKRHKFKRGPMTHGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITVSKVQVLGIDEKQNLLILKGSVPGKSGNLLSI 204

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BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A8E6D6E5_9PHAE (50S ribosomal protein L3, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6E5_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.590e-32
Identity = 104/147 (70.75%), Postives = 115/147 (78.23%), Query Frame = 0

Query:    2 ITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIV 148
              KF + +LGHLKKN LP L HL EYK+L  E YS+GQ XXXXXXXXXXXXX     +GKGFSG+ KRH FKRGPMTH    XXXXXXXXXXXXXXXXXXXXXXXX    KK TVS +++LGID KQNLL+L+GSVPGK GNLL IV
Sbjct:   58 FNKFRRPQLGHLKKNKLPLLQHLGEYKILPTETYSVGQQXXXXXXXXXXXXXVTGKSLGKGFSGNQKRHHFKRGPMTHGSKNXXXXXXXXXXXXXXXXXXXXXXXXRLGGKKTTVSNVKVLGIDSKQNLLVLQGSVPGKPGNLLRIV 204

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BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: D1J752_ECTSI (50S ribosomal protein L3, chloroplastic n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J752_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.250e-32
Identity = 114/146 (78.08%), Postives = 121/146 (82.88%), Query Frame = 0

Query:    3 TKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIV 148
            +KF+K ELGHL+KNGL P     EY+V   +NYSL  XXXXXXXXXXXXXXX    IGKGFSG+ KRHKFKRGPMTH  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TVSKLEILGID KQNLLILKGSVPGK GNLLNI+
Sbjct:   59 SKFSKAELGHLEKNGLSPXXXXXEYRVXXXKNYSLXXXXXXXXXXXXXXXXXTGKSIGKGFSGNQKRHKFKRGPMTHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSKLEILGIDSKQNLLILKGSVPGKPGNLLNII 204

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BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: B7T1Y4_VAULI (50S ribosomal protein L3, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Y4_VAULI)

HSP 1 Score: 120 bits (301), Expect = 1.890e-31
Identity = 105/150 (70.00%), Postives = 118/150 (78.67%), Query Frame = 0

Query:    2 ITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 151
            I K  K +LGHLKK GLPPL +L EY   DI  + +GQ    XXXXXXXXXXXXXXXIGKGFSG+ KR+ FKRGPMTH    XXXXXXXXXXXXXXXXXXXXXXXX    KK+T+ KL+ILGID ++NLL++KGSVPGK GN LNI PAN
Sbjct:   47 IRKLTKGQLGHLKKVGLPPLKYLTEYNFKDINEFYVGQILTIXXXXXXXXXXXXXXXIGKGFSGTCKRYNFKRGPMTHGSKSXXXXXXXXXXXXXXXXXXXXXXXXQHGNKKVTILKLKILGIDTEENLLVVKGSVPGKPGNFLNITPAN 196

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BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Match: A0A7S6ZPA7_9STRA (50S ribosomal protein L3, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.020e-30
Identity = 91/148 (61.49%), Postives = 102/148 (68.92%), Query Frame = 0

Query:    4 KFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQXXXXXXXXXXXXXXXXXXXIGKGFSGSHKRHKFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPAN 151
            K  K + GHLKK G  PL HL EYKV  I+ + LG+                   IGKGFSG+ KRH FKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXX       AKKIT+SKL I+GID  +NLLI+KG+VPGK GNLLNIV +N
Sbjct:   60 KLTKPKHGHLKKVGCFPLYHLREYKVSKIDKFLLGETLTVDIFKIGQYVNISGQSIGKGFSGNQKRHNFKRGPMTHXXXXXXXXXXXXXXXXXXXXXXXXKMAGQYGAKKITISKLRIIGIDKTRNLLIIKGNVPGKPGNLLNIVGSN 207

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot

BLAST of mRNA_H-elongata_contig195254.5441.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8F0JZG8_9PHAE	7.860e-54	94.04	Ribosomal protein L3 n=1 Tax=Desmarestia aculeata ...	[more]
A0A0R6MC27_UNDPI	7.340e-42	82.12	50S ribosomal protein L3, chloroplastic n=28 Tax=L...	[more]
A0A8F0JYJ1_9PHAE	1.040e-41	74.15	Ribosomal protein L3 n=1 Tax=Chorda asiatica TaxID...	[more]
A0A8F0F776_9PHAE	8.390e-41	82.00	Ribosomal protein L3 n=1 Tax=Protohalopteris sp. T...	[more]
D1GJT2_FUCVE	4.490e-38	66.23	50S ribosomal protein L3, chloroplastic n=3 Tax=Fu...	[more]
A0A1L2F1Q4_9PHAE	5.950e-36	79.86	Ribosomal protein L3 n=1 Tax=Coccophora langsdorfi...	[more]
A0A8E6D6E5_9PHAE	1.590e-32	70.75	50S ribosomal protein L3, chloroplastic n=1 Tax=Is...	[more]
D1J752_ECTSI	2.250e-32	78.08	50S ribosomal protein L3, chloroplastic n=9 Tax=Ec...	[more]
B7T1Y4_VAULI	1.890e-31	70.00	50S ribosomal protein L3, chloroplastic n=1 Tax=Va...	[more]
A0A7S6ZPA7_9STRA	2.020e-30	61.49	50S ribosomal protein L3, chloroplastic n=1 Tax=Sc...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 44..124 e-value: 3.0E-13 score: 49.5
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 3..147 e-value: 1.0E-51 score: 173.7
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 4..150
None	No IPR available	GENE3D	2.40.30.10		coord: 70..151 e-value: 4.6E-11 score: 44.5
None	No IPR available	PANTHER	PTHR11229:SF14		coord: 4..150
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 46..69
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 4..150

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig195254	contig	H-elongata_contig195254:49..504 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig195254.5441.1	mRNA_H-elongata_contig195254.5441.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig195254 49..504 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig195254.5441.1 ID=prot_H-elongata_contig195254.5441.1|Name=mRNA_H-elongata_contig195254.5441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
RITKFNKVELGHLKKNGLPPLSHLHEYKVLDIENYSLGQIINVNSFEIGQ
FVNVTGKSIGKGFSGSHKRHKFKRGPMTHGSKNHRAPGSIGPGTTPGRVF
PGKLMPGQLGAKKITVSKLEILGIDLKQNLLILKGSVPGKTGNLLNIVPA
N*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000597	Ribosomal_L3
IPR019927	Ribosomal_L3_bac/org-type
IPR019926	Ribosomal_L3_CS
IPR009000	Transl_B-barrel_sf