mRNA_H-elongata_contig19496.5427.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19496.5427.1
Unique NamemRNA_H-elongata_contig19496.5427.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19496.5427.1 vs. uniprot
Match: D8LE62_ECTSI (GPI inositol-deacylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE62_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.600e-27
Identity = 67/153 (43.79%), Postives = 84/153 (54.90%), Query Frame = 1 
Query:    1 MPLLEEVD----EGSDSVDKLKAEHRRKRHKGRKKSKKNTKGGSIVG--VLVVAIAIVGVGLWSRASVLNRDSNSCKMTMSRPKYVPLAVPSYLAGGEGRGGEVGDELTPGYGYRLMRYIDGKLPEEDRSKPLKPKGFPVLFVPGHVGSYKQA 441
            MPLLEEVD    + ++  + LKA HR                  +    V   A  ++G G W+R+   +  SNSCKMT SRP+YV L V  Y  G      E   E  PGY YRLMRY+D  LP  +++ PLKP G PVLFVPGH+GSY+QA
Sbjct:    1 MPLLEEVDPEAGDSAEGAEGLKAAHRXXXXXXXXXXXXXXXXXGVAAFRVFFEAAVVLGFGFWARSKGTDSRSNSCKMTFSRPEYVHLPVAGYPTG------EAAGEEVPGYQYRLMRYMDRALPASEKADPLKPAGVPVLFVPGHLGSYEQA 147
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BLAST of mRNA_H-elongata_contig19496.5427.1 vs. uniprot
Match: A0A1B6CQG4_9HEMI (GPI inositol-deacylase n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CQG4_9HEMI)

HSP 1 Score: 53.9 bits (128), Expect = 1.610e-5
Identity = 34/110 (30.91%), Postives = 60/110 (54.55%), Query Frame = 1 
Query:  118 SIVGVLVVAIAIVGVGLWSRASVLNRDSNSCKMTM--SRPKYVPLAVPSYLAGGEGRGGEVGDELTPGYG-YRLMRYIDGKLPEEDRSKPLKPKGFPVLFVPGHVGSYKQ 438
            SI+ +L   ++ + VG +++  + +R+ N+C+MT     P++V +++P                +T  Y  Y L  Y +G+    D+++ +K  G PVLF+PGH GSYKQ
Sbjct:   19 SIISLLFYLLSFI-VG-YTQIRIRSREINNCEMTYMYEYPQFVRISLPP--------------NITTNYRRYGLYAYAEGRF--IDKARQMKFDGIPVLFIPGHSGSYKQ 110
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BLAST of mRNA_H-elongata_contig19496.5427.1 vs. uniprot
Match: F2U7U3_SALR5 (GPI inositol-deacylase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7U3_SALR5)

HSP 1 Score: 53.5 bits (127), Expect = 2.560e-5
Identity = 35/106 (33.02%), Postives = 48/106 (45.28%), Query Frame = 1 
Query:  136 VVAIAIVGVGLWSR-----ASVLNRDSNSCKMTMSRPKYVPLAVPSYLAGGEGRGGEVGDELTPGYGYRLMRYIDGKLPEEDRSKPLKPKGFPVLFVPGHVGSYKQ 438
            VV + +V V LW       ASV     N C MT   P Y  L  P +                    YRL+ Y       ++R++P+  +G PVLF+PGH+GSY+Q
Sbjct:   10 VVVLCLVAVPLWMAHHQRYASV----ENKCHMTYMYPSYTALEAPHHPR------------------YRLLVY-------KERARPIALRGRPVLFIPGHLGSYEQ 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19496.5427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LE62_ECTSI2.600e-2743.79GPI inositol-deacylase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A1B6CQG4_9HEMI1.610e-530.91GPI inositol-deacylase n=1 Tax=Clastoptera arizona... [more]
F2U7U3_SALR52.560e-533.02GPI inositol-deacylase n=1 Tax=Salpingoeca rosetta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19496contigH-elongata_contig19496:934..1648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue3.3e-24
Seed eggNOG ortholog2880.D8LE62
KEGG koko:K03263,ko:K05294
KEGG Pathwayko00563,ko01100,map00563,map01100
EggNOG free text desc.phosphatidylinositol deacylase activity
EggNOG OGsKOG3724@1,KOG3724@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012
Hectar predicted targeting categorysignal anchor
Exons2
Model size468
Cds size468
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930108.528435-CDS-H-elongata_contig19496:933..10501622930108.528435-CDS-H-elongata_contig19496:933..1050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19496 934..1050 +
1691679283.5223289-CDS-H-elongata_contig19496:933..10501691679283.5223289-CDS-H-elongata_contig19496:933..1050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19496 934..1050 +
1622930108.5415068-CDS-H-elongata_contig19496:1297..16481622930108.5415068-CDS-H-elongata_contig19496:1297..1648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19496 1298..1648 +
1691679283.5332325-CDS-H-elongata_contig19496:1297..16481691679283.5332325-CDS-H-elongata_contig19496:1297..1648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19496 1298..1648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19496.5427.1prot_H-elongata_contig19496.5427.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19496 934..1648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19496.5427.1

>prot_H-elongata_contig19496.5427.1 ID=prot_H-elongata_contig19496.5427.1|Name=mRNA_H-elongata_contig19496.5427.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MPLLEEVDEGSDSVDKLKAEHRRKRHKGRKKSKKNTKGGSIVGVLVVAIA
IVGVGLWSRASVLNRDSNSCKMTMSRPKYVPLAVPSYLAGGEGRGGEVGD
ELTPGYGYRLMRYIDGKLPEEDRSKPLKPKGFPVLFVPGHVGSYKQASEG
GMCLS*
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mRNA from alignment at H-elongata_contig19496:934..1648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19496.5427.1 ID=mRNA_H-elongata_contig19496.5427.1|Name=mRNA_H-elongata_contig19496.5427.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=715bp|location=Sequence derived from alignment at H-elongata_contig19496:934..1648+ (Himanthalia elongata Himel1 dioecious)
ATGCCGCTGCTGGAGGAAGTTGACGAGGGGTCTGATTCGGTGGATAAGCT
AAAGGCGGAGCACAGACGAAAACGACACAAAGGCCGCAAGAAAAGCAAAA
AGAATACCAAGGGAGGGGTGAGTGATGATATACCGCGCAGCACACCGCCA
CCACGGCGCTCTCGGTTGTAGCTTCGTGTTGTTTAATGATCGTGACAGAT
GCTCTCCTGCTTGATCCCATCACATAGGCCGTGCTTGAAGGGAGGTATGG
GGGAGAGGGGGGGTTTGTGCGAGCGCTTGAGGTGATCTGCTCGGAAAATT
TCACACGAGGATTCCTCTCGGCCCTCGCGCCTGCTCGCACCCGCAGGATG
GTCCTTACTTCCAGAGCATCGTCGGAGTTCTCGTGGTAGCAATCGCAATC
GTCGGAGTCGGACTGTGGTCTCGGGCGTCGGTTTTGAACCGCGATTCCAA
CTCCTGCAAGATGACCATGTCTAGACCCAAGTACGTACCTCTTGCCGTAC
CGAGTTATCTTGCCGGAGGAGAGGGAAGAGGTGGAGAGGTGGGCGATGAA
CTAACGCCGGGTTATGGATACCGTCTGATGAGGTACATCGATGGCAAGCT
CCCCGAGGAAGACAGAAGCAAGCCTCTGAAGCCGAAGGGCTTTCCCGTCC
TATTCGTGCCAGGCCATGTCGGCAGCTACAAGCAGGCGAGCGAGGGTGGA
ATGTGCTTGTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig19496:934..1648+

>mRNA_H-elongata_contig19496.5427.1 ID=mRNA_H-elongata_contig19496.5427.1|Name=mRNA_H-elongata_contig19496.5427.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig19496:934..1648+ (Himanthalia elongata Himel1 dioecious)
ATGCCGCTGCTGGAGGAAGTTGACGAGGGGTCTGATTCGGTGGATAAGCT
AAAGGCGGAGCACAGACGAAAACGACACAAAGGCCGCAAGAAAAGCAAAA
AGAATACCAAGGGAGGGATGCCGCTGCTGGAGGAAGTTGACGAGGGGTCT
GATTCGGTGGATAAGCTAAAGGCGGAGCACAGACGAAAACGACACAAAGG
CCGCAAGAAAAGCAAAAAGAATACCAAGGGAGGGAGCATCGTCGGAGTTC
TCGTGGTAGCAATCGCAATCGTCGGAGTCGGACTGTGGTCTCGGGCGTCG
GTTTTGAACCGCGATTCCAACTCCTGCAAGATGACCATGTCTAGACCCAA
GTACGTACCTCTTGCCGTACCGAGTTATCTTGCCGGAGGAGAGGGAAGAG
GTGGAGAGGTGGGCGATGAACTAACGCCGGGTTATGGATACCGTCTGATG
AGGTACATCGATGGCAAGCTCCCCGAGGAAGACAGAAGCAAGCCTCTGAA
GCCGAAGGGCTTTCCCGTCCTATTCGTGCCAGGCCATGTCGGCAGCTACA
AGCAGGCGAGCGAGGGTGGAATGTGCTTGTCTTGAAGCATCGTCGGAGTT
CTCGTGGTAGCAATCGCAATCGTCGGAGTCGGACTGTGGTCTCGGGCGTC
GGTTTTGAACCGCGATTCCAACTCCTGCAAGATGACCATGTCTAGACCCA
AGTACGTACCTCTTGCCGTACCGAGTTATCTTGCCGGAGGAGAGGGAAGA
GGTGGAGAGGTGGGCGATGAACTAACGCCGGGTTATGGATACCGTCTGAT
GAGGTACATCGATGGCAAGCTCCCCGAGGAAGACAGAAGCAAGCCTCTGA
AGCCGAAGGGCTTTCCCGTCCTATTCGTGCCAGGCCATGTCGGCAGCTAC
AAGCAGGCGAGCGAGGGTGGAATGTGCTTGTCTTGA
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