mRNA_H-elongata_contig19484.5421.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: D8LPM3_ECTSI (Short-chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM3_ECTSI) HSP 1 Score: 426 bits (1096), Expect = 5.120e-147 Identity = 210/335 (62.69%), Postives = 261/335 (77.91%), Query Frame = 1
Query: 1 MVSAHSKT--ARTIARDVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEKLGKKVDELI 999
M SAHS A+++ +D+RGKHFVVTGANTG+GY T+RELAKMG VT+ACRSAERG+ AIDK++ EAL KPV++G DLLEGL DVDVRLE+LDL SL S+++F++R K + ++V+VLINNAG+M E+ ET +G EM IGVNHFG HLLTRLMEPL+ DGGRVIF SS H Q P T+D++N+N+EKP +YN W AYGRSKL N+LDAKEF KRL R I YA PG V+T+++RNMTD S SR+TR AP++++++ L GALTT+RCAVDP+L PE SGKYW MKEE SELA DPA PR W+VTE +LE KLGK VD+L+
Sbjct: 1 MGSAHSTNCKAKSVCQDLRGKHFVVTGANTGLGYATTRELAKMGAAVTLACRSAERGQQAIDKMKAEALEKPVKEGVDLLEGLTDVDVRLEVLDLGSLQSVIAFAQRFKASGTKVDVLINNAGIMAIPERRETVDGLEMQIGVNHFGGHLLTRLMEPLMNDGGRVIFLSSLGHRQPPGQAKVTLDFDNVNYEKPDTYNSWMAYGRSKLANILDAKEFAKRLEARGISTYACHPGIVNTELMRNMTDSSLMSRVTRLTAPLSRFILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEAKLGKNVDDLL 335
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: D8LP30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP30_ECTSI) HSP 1 Score: 393 bits (1010), Expect = 8.270e-132 Identity = 199/333 (59.76%), Postives = 257/333 (77.18%), Query Frame = 1
Query: 7 SAHSKTARTIARDVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTR--FLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEKLGKKVDELI 999
S ++ A+++ +D+RGKHF+VTGANTG+GYVT+RELAKMG KVT+ACRSAERG+ AIDK++ EAL KPV++G DLL+GL +VDVRLE+LDL SL S+V+F++R K + ++V+VL+NNAG+ G + ETA+G EM IGVNHFG HLLTRLMEP + DGGRV+F SS AH + P +P TT DW+N+NF+KP +Y++ +AY RSKL N+ DAKEF KRLA R+I YAV PG V T+I R + G + ++A +L P L GALTT+RCAVDP+L PELSGKYW MKEE SELA DPA PR W+VTE +LEEKLGK+VD+++
Sbjct: 154 SKATRKAKSLRQDLRGKHFIVTGANTGLGYVTARELAKMGAKVTLACRSAERGQQAIDKMKAEALEKPVKEGVDLLDGLTEVDVRLEVLDLGSLQSVVAFAQRFKASGTKVDVLVNNAGIFGVPNRRETADGLEMQIGVNHFGGHLLTRLMEPSMNDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLMMPIVNAGYVALGWVWLKGP-LDGALTTVRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEEKLGKRVDDVV 485
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A6H5JP92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP92_9PHAE) HSP 1 Score: 383 bits (984), Expect = 5.440e-130 Identity = 194/332 (58.43%), Postives = 250/332 (75.30%), Query Frame = 1
Query: 7 SAHSKTARTIARDVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTR--FLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEKLGKKVDEL 996
S ++ A+++ +D+RGKHF+VTGANTG+GYVT+RELAKMG KVT+ACRSAERG+ AIDKL+ E L KP ++G DLL+GL +VDVRLE+LDL SL S+++F++ K + ++V+VL+NNAG+ G + ETA+G EM IGVNHFG HLLTRLMEP I DGGRV+F SS H + P +P TT DW+N+NF+KP +Y++ +AY RSKL N+ DAKEF KRLA R+I YAV PG V T+I R + G + + A +L P L GALTT+RCAVDP L PELSGKYW MKEE SELA DPA PR W++TE +LE+KLGK+VD++
Sbjct: 7 SKATRKAKSLRQDLRGKHFIVTGANTGLGYVTARELAKMGAKVTLACRSAERGQQAIDKLKAEVLEKPAKEGVDLLDGLTEVDVRLEVLDLGSLRSVIAFAQGFKASGTKVDVLVNNAGIFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPSINDGGRVLFLSSLTHSRPPGMPKTTWDWDNMNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYAALGWVWLKGP-LDGALTTIRCAVDPCLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEDKLGKRVDDV 337
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: D7FTL4_ECTSI (Similar to Retinol dehydrogenase 12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTL4_ECTSI) HSP 1 Score: 220 bits (561), Expect = 7.120e-68 Identity = 112/211 (53.08%), Postives = 138/211 (65.40%), Query Frame = 1
Query: 367 MGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEKLGKKVDELI 999
M + T +G E IGVNHFG HLLTRLME I DGGRV+F SS AH DW+N+N+ KP Y AYGRSKL NVLDAK F L+DR I YA+ PG V+TD+ RN+TDG SR+ R + +++ L G+LTTLRCA+DPAL PE SGKYW MK+ S LASDPA PR W++TE++LE KLGKK++ L+
Sbjct: 1 MAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHG------GWDWDNVNYTKPNKYVPMIAYGRSKLANVLDAKAFAGHLSDRRINTYALHPGVVNTDLFRNVTDGRLISRVFRVAKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVQPSALASDPANPPRLWEITEELLETKLGKKIENLL 205
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A433SZU2_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SZU2_ELYCH) HSP 1 Score: 197 bits (501), Expect = 2.940e-57 Identity = 123/310 (39.68%), Postives = 180/310 (58.06%), Query Frame = 1
Query: 55 KHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLI--ADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEKLG 978
K ++TGANTG+G T+R+LAK GG++ MACR+ E+G EA K +++E ++ DV ++ LDL+S SI +F+++ E +R+++LINNAGVM K T +G EM IG NHFG LLT L+ + R++ SS AH A +I W++IN +K Y WAAYG+SKL N+L E + RL + V +V PG V+TD+ R+ G F + L P++K + GA TTL CA+ P LE E+SGKY+ KE+ S A + R W++TE+I+++KL
Sbjct: 14 KTVLITGANTGLGKETARDLAKRGGRIIMACRNLEKG---------EATRK------EIVEETKNEDVVVQELDLASFESIQNFAKKFNETETRLDILINNAGVMA-CPKTLTKDGLEMQIGTNHFGHFLLTNLLLDKLKACSPSRIVILSSMAHAFA------SIKWDDINSDK--KYGDWAAYGQSKLANILHCLELSNRLKGTGVTVNSVHPGGVNTDLQRHTNRGIF-----KLLKPLSKLFFKTPVDGAQTTLYCALSPDLE--EVSGKYFVDCKEKAPSRRGQSEADAKRLWELTEEIIQQKLS 292
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A6H5JGN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN4_9PHAE) HSP 1 Score: 186 bits (471), Expect = 2.320e-54 Identity = 94/178 (52.81%), Postives = 119/178 (66.85%), Query Frame = 1
Query: 220 GADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRM 753
G DLLEGL DVDV++E+LDL L S+VSF++RLK + +++VLI+NAG+M + + +G E IGVNHF HLL+RLM I DGGRV+F SS AH DW+N+N+ KP + AYGRSKL NVLDAK F L+DR I YA+ PG V+TD+ RN TDG SRM
Sbjct: 29 GVDLLEGLSDVDVQVEVLDLGVLQSVVSFAQRLKSSGQKIDVLIDNAGIMAIPTEKRSVDGLEKQIGVNHFVTHLLSRLMGKQIIDGGRVVFFSSVAHKHG------GCDWDNVNYTKPNEHGPMIAYGRSKLANVLDAKGFAGHLSDRRINTYALHPGVVNTDLFRNATDGRLISRM 200
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A397JNC4_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JNC4_9GLOM) HSP 1 Score: 173 bits (439), Expect = 3.030e-48 Identity = 116/319 (36.36%), Postives = 179/319 (56.11%), Query Frame = 1
Query: 43 DVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGG--RVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYL---IPPALKGALTTLRCAVDPALEIPELSGKYW--HGMKEEPASELASDPAFSPRYWKVTEDILEEKLG 978
D++GK +VTGANTGIG++T+RELA+ V +ACR +G+ AID+++QE G D +E L LDLSSL S++ + + + +++L+NNAG+M + T +G + GVNH G L T + P I R++ SS AH +AP ID+ENIN P +Y+ + YG+SKL N+L + E KRLAD+ +YV +V PG V T++ RN+ D M + P+ L + A +GA+T+L CA P + L G+Y+ G +P +L +D + + WK +E+++ +KL
Sbjct: 18 DLQGKIAIVTGANTGIGFITARELARKNAHVFVACRDQAKGEKAIDEIKQET-------GNDKVEYLP--------LDLSSLKSVLKATELFLDRKLPLHILVNNAGIMATPFTL-TEDGIQDQFGVNHIGHFLFTIKLLPTIEASAPSRIVNLSSMAHSRAPKCG---IDFENIN--NPDTYSPFTRYGQSKLANILFSLELNKRLADKEVYVNSVHPGIVRTELTRNLKDS-----MGLIVKPIEMVLGLFMISAEEGAITSLYCATSPEIIEKNLRGQYFVPAGKLSKP-EKLGTDENLALKLWKYSEELINKKLN 309
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A3S0Z7Y7_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0Z7Y7_ELYCH) HSP 1 Score: 174 bits (441), Expect = 4.740e-48 Identity = 119/312 (38.14%), Postives = 175/312 (56.09%), Query Frame = 1
Query: 46 VRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLM-EPLIADG-GRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFL-APVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEK 972
+ GK V+TG NTGIG+ T+++LA+ G ++ MACR ER + A K++ + + +V + LDLSS SI +F +R+++LINNAGVM +M T +G EM +G NHFG LLT L+ + L A R++ SS AH + I++++IN EK SY K AY +SKL N+L KE T+RL + YA+ PG V T++ R++ + + + FL AP+ L+ L+GA TTL CA++PA E +SGKY+ KE+ S A D + R W V+ +I E K
Sbjct: 63 LNGKTVVITGCNTGIGFETAKDLAQRGARIIMACRDMERCEAAASKIK---------------DIVNSNNVICKKLDLSSFESIRAFCDEFNRTEARLDILINNAGVM-MCPRMLTKDGLEMQLGTNHFGHFLLTNLLLDKLKASRPSRIVAVSSRAHTRT-----QGINFDDINSEK--SYEKMTAYSQSKLANILHVKELTRRLEGTGVTAYALHPGVVATELPRHIALAN--NPIILFLTAPLRYILLKTPLEGAQTTLACALNPAWET--ISGKYYSDCKEKEPSLPAQDAEAAKRLWDVSVEITEGK 347
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A2P6NN59_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NN59_9EUKA) HSP 1 Score: 172 bits (435), Expect = 4.880e-47 Identity = 111/310 (35.81%), Postives = 173/310 (55.81%), Query Frame = 1
Query: 43 DVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGG--RVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYV--YAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDI 960
D++GK ++TGANTGIG +T++E+AKMG V +A R ER A++KL++E+ G+ +E LQ LDL+S S+ F++ E +++L+NNAGVM ++ T +G EM +G+NHFG LLT L+ + R++ SS H A ++ E+IN EKPGSY W YG SKL N+L A + K+ + V +++ PG + T++ RN+ T + R + P+ +L P +GALT++ CAV P E + GKY +E A ++ + + WK++EDI
Sbjct: 82 DLKGKVAIITGANTGIGLITAKEIAKMGAHVIVASRDPERSLAAVEKLKEES-------GSQQIEFLQ--------LDLASFASVRDFAKAFHEKNLPLHILVNNAGVMALPQRQTTKDGLEMQMGINHFGHFLLTNLLLDDLKKSAPSRIVNVSSEGHKMA------KMNLEDINCEKPGSYGPWRVYGNSKLSNILFAMQLQKQFDQEKVDVSAWSLHPGTIRTELGRNLE--GITGYLNRTIGPL--FLKTPE-QGALTSIFCAVRP--EALQSRGKYMSNCRE--AGTWHANEELAEKLWKLSEDI 361
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: UPI001F03DF24 (retinol dehydrogenase 13-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03DF24) HSP 1 Score: 170 bits (431), Expect = 6.860e-47 Identity = 101/309 (32.69%), Postives = 174/309 (56.31%), Query Frame = 1
Query: 46 VRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGG--RVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILE 966
++GK ++TGANTGIG T+ LA G ++ MACRS ERG+ A++ D+++ + D+ L+ LDLSS S+ F+ + + ++++VLINNAG++ E+ + +G E+ + VNHFG LLT L+ L+ R++ SSGAH + I +++ FEK SYN+W AYG+SKL N+L +E KRL + ++ PG + T++ R + + + +FL ++ ++ +GA TT+ AV ++ ++GKY+ +E + A D + R W+++E+I++
Sbjct: 36 MKGKTVIITGANTGIGKSTAINLASRGARIIMACRSLERGQAALN---------------DIVKQTGNNDIILKHLDLSSFKSVRKFAEEIYSSENKIDVLINNAGLVSTTERQVSKDGLELTMAVNHFGHFLLTNLLLDLLRRSAPSRIVVVSSGAHYSIANTK-SHIKLDDLQFEK--SYNEWEAYGQSKLANILFTRELAKRLKGTGVTANSLHPGVIFTELSRY----ALSENVNKFLNFISPVVMKTLEEGAQTTIHLAVSE--DVANVTGKYFVDCEETKPAHTAEDDDGAKRLWEISEEIVQ 320 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19484.5421.1 >prot_H-elongata_contig19484.5421.1 ID=prot_H-elongata_contig19484.5421.1|Name=mRNA_H-elongata_contig19484.5421.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp MVSAHSKTARTIARDVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRback to top mRNA from alignment at H-elongata_contig19484:1895..3589- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19484.5421.1 ID=mRNA_H-elongata_contig19484.5421.1|Name=mRNA_H-elongata_contig19484.5421.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1695bp|location=Sequence derived from alignment at H-elongata_contig19484:1895..3589- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19484:1895..3589- >mRNA_H-elongata_contig19484.5421.1 ID=mRNA_H-elongata_contig19484.5421.1|Name=mRNA_H-elongata_contig19484.5421.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig19484:1895..3589- (Himanthalia elongata Himel1 dioecious)back to top |