mRNA_H-elongata_contig194816.5419.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194816.5419.1
Unique NamemRNA_H-elongata_contig194816.5419.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig194816.5419.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 8.670e-30
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:   13 ITAVNSWIRRYCNAGTTLGQVFEFLAGAIEKQADRAALRDAQLRLPSVSGTETAQYWFGDNVMAPLKFALGAWPFRFMKDDISMCLVFCSGGDNAVLEGAARDAAIEKL 339
            + ++N+  +R  N+  +L +VF+FL+ AIEKQA RA LR AQLRLPSVS  +TA YWFG  +  P KFALG W ++FM D+++MC  FCS   NA+LEGA+RD A+ K 
Sbjct:  512 VESMNAQAKRVLNSQASLVRVFKFLSDAIEKQAARAELRSAQLRLPSVSTPDTATYWFGAALTTPCKFALGVWAYKFMMDEVAMCATFCSSPSNALLEGASRDDALGKF 620
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194816.5419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG6_9PHAE8.670e-3053.21SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194816contigH-elongata_contig194816:78..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_002460.1
Exons1
Model size461
Cds size354
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930107.7857122-UTR-H-elongata_contig194816:77..1841622930107.7857122-UTR-H-elongata_contig194816:77..184Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig194816 78..184 -
1691679283.2244723-UTR-H-elongata_contig194816:77..1841691679283.2244723-UTR-H-elongata_contig194816:77..184Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig194816 78..184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930107.8063316-CDS-H-elongata_contig194816:184..5381622930107.8063316-CDS-H-elongata_contig194816:184..538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194816 185..538 -
1691679283.2329707-CDS-H-elongata_contig194816:184..5381691679283.2329707-CDS-H-elongata_contig194816:184..538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194816 185..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194816.5419.1prot_H-elongata_contig194816.5419.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194816 185..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194816.5419.1

>prot_H-elongata_contig194816.5419.1 ID=prot_H-elongata_contig194816.5419.1|Name=mRNA_H-elongata_contig194816.5419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
CFPHITAVNSWIRRYCNAGTTLGQVFEFLAGAIEKQADRAALRDAQLRLP
SVSGTETAQYWFGDNVMAPLKFALGAWPFRFMKDDISMCLVFCSGGDNAV
LEGAARDAAIEKLSTPA*
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mRNA from alignment at H-elongata_contig194816:78..538-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194816.5419.1 ID=mRNA_H-elongata_contig194816.5419.1|Name=mRNA_H-elongata_contig194816.5419.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=461bp|location=Sequence derived from alignment at H-elongata_contig194816:78..538- (Himanthalia elongata Himel1 dioecious)
TGTTTTCCACACATTACAGCTGTCAATTCCTGGATCAGACGATACTGCAA
TGCGGGAACGACCCTGGGTCAGGTCTTCGAGTTCCTTGCGGGCGCCATTG
AGAAACAGGCCGACCGCGCGGCCCTGCGCGACGCGCAACTACGCCTCCCT
TCGGTTAGTGGCACGGAAACCGCCCAGTACTGGTTCGGTGACAACGTCAT
GGCGCCACTCAAGTTCGCGCTCGGTGCGTGGCCTTTCAGGTTCATGAAGG
ACGATATTTCCATGTGCTTGGTGTTCTGCTCTGGCGGCGACAATGCAGTG
CTTGAGGGCGCCGCTCGCGATGCGGCAATAGAGAAGTTGAGTACACCGGC
ATGATGATCGTACATGTCGAGACGTTGGCTGTGATAGTGGAGAACCAGAA
CGGTTCGAACATGCGTTTTGCAGTTCTCGGGATGAAGGATGGTTGTCACC
TTTGCTCGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig194816:78..538-

>mRNA_H-elongata_contig194816.5419.1 ID=mRNA_H-elongata_contig194816.5419.1|Name=mRNA_H-elongata_contig194816.5419.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig194816:78..538- (Himanthalia elongata Himel1 dioecious)
TGTTTTCCACACATTACAGCTGTCAATTCCTGGATCAGACGATACTGCAA
TGCGGGAACGACCCTGGGTCAGGTCTTCGAGTTCCTTGCGGGCGCCATTG
AGAAACAGGCCGACCGCGCGGCCCTGCGCGACGCGCAACTACGCCTCCCT
TCGGTTAGTGGCACGGAAACCGCCCAGTACTGGTTCGGTGACAACGTCAT
GGCGCCACTCAAGTTCGCGCTCGGTGCGTGGCCTTTCAGGTTCATGAAGG
ACGATATTTCCATGTGCTTGGTGTTCTGCTCTGGCGGCGACAATGCAGTG
CTTGAGGGCGCCGCTCGCGATGCGGCAATAGAGAAGTTGAGTACACCGGC
ATGATGTTTTCCACACATTACAGCTGTCAATTCCTGGATCAGACGATACT
GCAATGCGGGAACGACCCTGGGTCAGGTCTTCGAGTTCCTTGCGGGCGCC
ATTGAGAAACAGGCCGACCGCGCGGCCCTGCGCGACGCGCAACTACGCCT
CCCTTCGGTTAGTGGCACGGAAACCGCCCAGTACTGGTTCGGTGACAACG
TCATGGCGCCACTCAAGTTCGCGCTCGGTGCGTGGCCTTTCAGGTTCATG
AAGGACGATATTTCCATGTGCTTGGTGTTCTGCTCTGGCGGCGACAATGC
AGTGCTTGAGGGCGCCGCTCGCGATGCGGCAATAGAGAAGTTGAGTACAC
CGGCATGA
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