prot_H-elongata_contig194816.5419.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig194816.5419.1
Unique Nameprot_H-elongata_contig194816.5419.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length118
Homology
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BLAST of mRNA_H-elongata_contig194816.5419.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.340e-30
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = 0 
Query:    5 ITAVNSWIRRYCNAGTTLGQVFEFLAGAIEKQADRAALRDAQLRLPSVSGTETAQYWFGDNVMAPLKFALGAWPFRFMKDDISMCLVFCSGGDNAVLEGAARDAAIEKL 113
            + ++N+  +R  N+  +L +VF+FL+ AIEKQA RA LR AQLRLPSVS  +TA YWFG  +  P KFALG W ++FM D+++MC  FCS   NA+LEGA+RD A+ K 
Sbjct:  512 VESMNAQAKRVLNSQASLVRVFKFLSDAIEKQAARAELRSAQLRLPSVSTPDTATYWFGAALTTPCKFALGVWAYKFMMDEVAMCATFCSSPSNALLEGASRDDALGKF 620
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194816.5419.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG6_9PHAE4.340e-3053.21SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194816contigH-elongata_contig194816:185..538 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194816.5419.1mRNA_H-elongata_contig194816.5419.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig194816 78..538 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig194816.5419.1 ID=prot_H-elongata_contig194816.5419.1|Name=mRNA_H-elongata_contig194816.5419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
CFPHITAVNSWIRRYCNAGTTLGQVFEFLAGAIEKQADRAALRDAQLRLP
SVSGTETAQYWFGDNVMAPLKFALGAWPFRFMKDDISMCLVFCSGGDNAV
LEGAARDAAIEKLSTPA*
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