mRNA_H-elongata_contig19474.5416.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19474.5416.1
Unique NamemRNA_H-elongata_contig19474.5416.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Match: D8LBI3_ECTSI (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 5.340e-39
Identity = 68/86 (79.07%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:    1 KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFREGTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ 258
            KRPGLDAFLKEM+Q YEIV+FTDS GGLADEWIT+MDP G  ISQRV+R+GTRYIDGKYVKDLSALNRPLE+ +++DDN DCI +Q
Sbjct:  267 KRPGLDAFLKEMSQLYEIVVFTDSMGGLADEWITQMDPQGT-ISQRVYRDGTRYIDGKYVKDLSALNRPLEQTLIIDDNADCISMQ 351
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BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Match: A0A168L0T1_MUCCL (Mitochondrial import inner membrane translocase subunit TIM50 (Fragment) n=1 Tax=Mucor lusitanicus CBS 277.49 TaxID=747725 RepID=A0A168L0T1_MUCCL)

HSP 1 Score: 100 bits (249), Expect = 1.400e-25
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFREGTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ 258
            KRPG+D FL  ++QFYEIVIFT  S   A   + K+DP  QY   R++RE TRY+DGKYVKDLS LNR L KV+++D NPD   LQ
Sbjct:    1 KRPGVDYFLSYLSQFYEIVIFTSQSSMNAMPLLDKLDPY-QYAMYRLYREATRYVDGKYVKDLSHLNRDLSKVIIMDSNPDSFSLQ 85
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BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Match: A0A3P7L6M4_DIBLA (Mitochondrial import inner membrane translocase subunit TIM50 (Fragment) n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7L6M4_DIBLA)

HSP 1 Score: 96.7 bits (239), Expect = 4.280e-23
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFREGTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ 258
            KRP L+ FL++++ FYE+V FT+ S       + ++DP GQYI  R+FRE TRY +GK++KDLS LNR L +V+LVD NPD   LQ
Sbjct:   28 KRPALELFLQQLSPFYEVVTFTNESAMTGMPILAQLDPQGQYIHYRLFREATRYRNGKHIKDLSCLNRDLSRVILVDWNPDAATLQ 113
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BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Match: A0A0B7NSD9_9FUNG (Mitochondrial import inner membrane translocase subunit TIM50 n=5 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7NSD9_9FUNG)

HSP 1 Score: 100 bits (249), Expect = 4.480e-23
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFREGTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ 258
            KRPG+D FL  ++QFYEIVIFT  S   A   + K+DP  QY   R++RE TRY+DGKYVKDLS LNR L KV+++D NPD   LQ
Sbjct:  181 KRPGVDYFLSYLSQFYEIVIFTSQSSMNAMPLLDKLDPY-QYAMYRLYREATRYVDGKYVKDLSHLNRDLSKVIIMDSNPDSFSLQ 265
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BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Match: A0A2G4SS92_RHIZD (Mitochondrial import inner membrane translocase subunit TIM50 n=4 Tax=Rhizopus TaxID=4842 RepID=A0A2G4SS92_RHIZD)

HSP 1 Score: 98.2 bits (243), Expect = 2.940e-22
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFREGTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ 258
            KRPG+D FL  ++QFYEIV+FT      A   + K+DP  QY   R++R+GTRYIDGKYVKDLS LNR L KV+++D NP+   LQ
Sbjct:  175 KRPGVDYFLSYLSQFYEIVVFTSQPAMNAAPILDKLDPY-QYAMYRLYRDGTRYIDGKYVKDLSYLNRDLSKVIIMDSNPESFSLQ 259
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BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Match: A0A654GRC9_9CEST (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GRC9_9CEST)

HSP 1 Score: 94.4 bits (233), Expect = 4.800e-22
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    1 KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFREGTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ 258
            KRP L+ FL++++ FYE+V FT+ S       + ++DP  QYI  R+FRE TRY +GK++KDLS LNR L +V+LVD NPD   LQ
Sbjct:   44 KRPALELFLQQLSPFYEVVTFTNESAMTGMPILAQLDPQAQYIHYRLFREATRYRNGKHIKDLSCLNRDLSRVILVDWNPDAATLQ 129
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BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Match: A0A1X2HI85_SYNRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HI85_SYNRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.590e-22
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFREGTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ 258
            KRPG+D FL  M+QF+EIVIFT  +   A   + K+DP  QY   R++RE TRY+DGKYVKDLS LNR L KV+++D NPD   +Q
Sbjct:  174 KRPGVDYFLAYMSQFFEIVIFTSQTSMNAMPILEKLDPY-QYSMYRLYREATRYVDGKYVKDLSHLNRDLSKVIIMDSNPDAFSMQ 258
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BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Match: A0A8H7BGE8_9FUNG (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BGE8_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 7.320e-22
Identity = 50/86 (58.14%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFREGTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ 258
            KRPG+D FL  M+QFYEIVIFT  S   A   + K+DP  QY   R++RE TRYI GKYVKDL  LNR L KV+++D NPD   LQ
Sbjct:  164 KRPGVDFFLSYMSQFYEIVIFTSQSSMNAIPILDKLDPY-QYALYRLYREATRYIGGKYVKDLRHLNRDLNKVIIMDSNPDAFSLQ 248
[Close]
BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Match: A0A8H7W055_9FUNG (Mitochondrial import inner membrane translocase subunit TIM50 n=2 Tax=Mucoraceae TaxID=34489 RepID=A0A8H7W055_9FUNG)

HSP 1 Score: 96.3 bits (238), Expect = 1.500e-21
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:    1 KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFREGTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ 258
            KRPG+D FL  ++QFYEIVIFT      A   + K+DP  QY   R++RE TRY+DGKYVKDLS LNR L KV+++D NP+   LQ
Sbjct:  176 KRPGVDYFLSYLSQFYEIVIFTSQPSLNALPLLDKLDPY-QYAMYRLYREATRYVDGKYVKDLSHLNRDLSKVIIMDSNPESFSLQ 260
[Close]
BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Match: A0A0R3S847_HYMDI (Mitochondrial import inner membrane translocase subunit TIM50 n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3S847_HYMDI)

HSP 1 Score: 95.5 bits (236), Expect = 1.500e-21
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFREGTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ 258
            KRP L+ FL+++A FYE+V FT  S       + ++DP GQYI  R+FRE TRY  GK++KDLS LNR L +V+L+D NPD   LQ
Sbjct:  175 KRPALELFLQQLAPFYEVVAFTQDSAMTGMPVMAQIDPKGQYIHYRLFRESTRYRKGKHIKDLSCLNRDLSRVILIDWNPDAASLQ 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19474.5416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI3_ECTSI5.340e-3979.07Mitochondrial import inner membrane translocase su... [more]
A0A168L0T1_MUCCL1.400e-2558.14Mitochondrial import inner membrane translocase su... [more]
A0A3P7L6M4_DIBLA4.280e-2352.33Mitochondrial import inner membrane translocase su... [more]
A0A0B7NSD9_9FUNG4.480e-2358.14Mitochondrial import inner membrane translocase su... [more]
A0A2G4SS92_RHIZD2.940e-2255.81Mitochondrial import inner membrane translocase su... [more]
A0A654GRC9_9CEST4.800e-2251.16Mitochondrial import inner membrane translocase su... [more]
A0A1X2HI85_SYNRA5.590e-2255.81Mitochondrial import inner membrane translocase su... [more]
A0A8H7BGE8_9FUNG7.320e-2258.14Mitochondrial import inner membrane translocase su... [more]
A0A8H7W055_9FUNG1.500e-2155.81Mitochondrial import inner membrane translocase su... [more]
A0A0R3S847_HYMDI1.500e-2152.33Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19474contigH-elongata_contig19474:596..1216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog2880.D8LBI3
Preferred nameTIMM50
KEGG koko:K17496
KEGG TC3.A.8.1
GOsGO:0001836,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005048,GO:0005102,GO:0005126,GO:0005134,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006464,GO:0006470,GO:0006605,GO:0006626,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009987,GO:0012501,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017038,GO:0019538,GO:0019866,GO:0023052,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0035335,GO:0036211,GO:0042277,GO:0042578,GO:0042886,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044743,GO:0044877,GO:0045184,GO:0046902,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0070851,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090559,GO:0097190,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1990542
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG2832@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTim50 homolog, mitochondrial inner membrane protein of TIM23 complex
Ec32 orthologEc-27_003880.1
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930107.5839353-CDS-H-elongata_contig19474:595..7601622930107.5839353-CDS-H-elongata_contig19474:595..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19474 596..760 -
1691679283.1383061-CDS-H-elongata_contig19474:595..7601691679283.1383061-CDS-H-elongata_contig19474:595..760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19474 596..760 -
1622930107.5962439-CDS-H-elongata_contig19474:1123..12161622930107.5962439-CDS-H-elongata_contig19474:1123..1216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19474 1124..1216 -
1691679283.1531944-CDS-H-elongata_contig19474:1123..12161691679283.1531944-CDS-H-elongata_contig19474:1123..1216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19474 1124..1216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19474.5416.1prot_H-elongata_contig19474.5416.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19474 596..1216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19474.5416.1

>prot_H-elongata_contig19474.5416.1 ID=prot_H-elongata_contig19474.5416.1|Name=mRNA_H-elongata_contig19474.5416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
KRPGLDAFLKEMAQFYEIVIFTDSSGGLADEWITKMDPLGQYISQRVFRE
GTRYIDGKYVKDLSALNRPLEKVVLVDDNPDCIYLQ
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mRNA from alignment at H-elongata_contig19474:596..1216-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19474.5416.1 ID=mRNA_H-elongata_contig19474.5416.1|Name=mRNA_H-elongata_contig19474.5416.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at H-elongata_contig19474:596..1216- (Himanthalia elongata Himel1 dioecious)
AAGCGGCCGGGCTTGGACGCGTTTCTGAAGGAAATGGCCCAATTCTATGA
GATCGTGATTTTCACTGACAGCTCGGGTGGGCTTGCTGACGAGGTAACCC
GCGTTGCGCCATCCTAGGAAAATGCTTTATCTGCCCCTCGCAACGAAAAA
TTTCCTTTAAAAGCAATTTGCCTCGGAAATCGTTCGAAATCGAGAGGATG
GGGAAGTAAAGCGAATCAACCCTTGGGCTGGTGTACTGCTTGCTTAACGT
ACTATGCTAAGCCACTCTCACAAAGACTGCAGATGTTTCGTTGACAGGAA
AATGTATTGGCAGCCATTACTGCGTAACGCCTCGCCTTTTTCTGGGAACA
CCGCTTTGTTTCGTCGATTATTATATAGTCTGTTCCACAATCGTCCGCCT
CCCAACTATATATGTCCGGCCTCTCGACAATGGGTAATGACGCCGATGAT
GACCAGTGGATCACCAAGATGGACCCGCTCGGGCAGTACATCAGCCAGAG
GGTGTTCCGCGAGGGTACGAGATACATCGACGGCAAGTATGTCAAGGACC
TGTCGGCGCTTAACCGACCCCTGGAAAAGGTGGTCCTCGTCGACGACAAC
CCAGACTGCATCTATTTACAG
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Coding sequence (CDS) from alignment at H-elongata_contig19474:596..1216-

>mRNA_H-elongata_contig19474.5416.1 ID=mRNA_H-elongata_contig19474.5416.1|Name=mRNA_H-elongata_contig19474.5416.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig19474:596..1216- (Himanthalia elongata Himel1 dioecious)
AAGCGGCCGGGCTTGGACGCGTTTCTGAAGGAAATGGCCCAATTCTATGA
GATCGTGATTTTCACTGACAGCTCGGGTGGGCTTGCTGACGAGAAGCGGC
CGGGCTTGGACGCGTTTCTGAAGGAAATGGCCCAATTCTATGAGATCGTG
ATTTTCACTGACAGCTCGGGTGGGCTTGCTGACGAGTGGATCACCAAGAT
GGACCCGCTCGGGCAGTACATCAGCCAGAGGGTGTTCCGCGAGGGTACGA
GATACATCGACGGCAAGTATGTCAAGGACCTGTCGGCGCTTAACCGACCC
CTGGAAAAGGTGGTCCTCGTCGACGACAACCCAGACTGCATCTATTTACA
GTGGATCACCAAGATGGACCCGCTCGGGCAGTACATCAGCCAGAGGGTGT
TCCGCGAGGGTACGAGATACATCGACGGCAAGTATGTCAAGGACCTGTCG
GCGCTTAACCGACCCCTGGAAAAGGTGGTCCTCGTCGACGACAACCCAGA
CTGCATCTATTTACAG
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