mRNA_H-elongata_contig19463.5411.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19463.5411.1
Unique NamemRNA_H-elongata_contig19463.5411.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19463.5411.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 8.380e-28
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:  109 SEMELEDCNSTANSATLGGSLYMSSSTYMMTDCRFWGDYNAVSTGATIFSVESDITAKGVTFSDTHNGSTMFAIFAGWDSTLEAQNCSFVGWIGSNVVLADSTGSLRLDACDFSDSPA 462
            S +E++DCNST+NSATLGGS+YMS S   +  C F GD   V TGA ++++++ + A+   F DT N + M A+ AG  +  EAQ+C F+GW G+NVVLAD TG L LD CDFS+S A
Sbjct:   91 SMIEMQDCNSTSNSATLGGSIYMSRSELDLRKCLFVGD--TVPTGAIVYTLDAKVRARDSIFEDTTNNAGMLAVQAGSHTEFEAQDCYFIGWTGTNVVLADQTGVLHLDGCDFSESTA 206
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BLAST of mRNA_H-elongata_contig19463.5411.1 vs. uniprot
Match: A0A6H5JUM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 5.030e-12
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   28 EANVDV--RDSLFFGNTAGERGGSIYS-TVSEMELEDCNSTANSATLGGSLYMSSSTYMMTDCRFWGD 222
            E++VD+  +++ F GN AGERGGS+YS T S +E++DCNST+NSATLGGS+YMS S   + +C F GD
Sbjct:  628 ESSVDLLCQNTTFVGNVAGERGGSLYSNTDSRIEMQDCNSTSNSATLGGSIYMSRSELELRNCLFVGD 695
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19463.5411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRF7_ECTSI8.380e-2851.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUM3_9PHAE5.030e-1257.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19463contigH-elongata_contig19463:3485..5199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size464
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19463.5411.1prot_H-elongata_contig19463.5411.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19463 3486..5199 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930107.0383701-CDS-H-elongata_contig19463:3485..35481622930107.0383701-CDS-H-elongata_contig19463:3485..3548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 3486..3548 -
1691679282.8678098-CDS-H-elongata_contig19463:3485..35481691679282.8678098-CDS-H-elongata_contig19463:3485..3548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 3486..3548 -
1622930107.0518312-CDS-H-elongata_contig19463:4151..43191622930107.0518312-CDS-H-elongata_contig19463:4151..4319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 4152..4319 -
1691679282.8758914-CDS-H-elongata_contig19463:4151..43191691679282.8758914-CDS-H-elongata_contig19463:4151..4319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 4152..4319 -
1622930107.0821726-CDS-H-elongata_contig19463:4701..48271622930107.0821726-CDS-H-elongata_contig19463:4701..4827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 4702..4827 -
1691679282.8835454-CDS-H-elongata_contig19463:4701..48271691679282.8835454-CDS-H-elongata_contig19463:4701..4827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 4702..4827 -
1622930107.1017182-CDS-H-elongata_contig19463:5094..51991622930107.1017182-CDS-H-elongata_contig19463:5094..5199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 5095..5199 -
1691679282.8927088-CDS-H-elongata_contig19463:5094..51991691679282.8927088-CDS-H-elongata_contig19463:5094..5199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19463 5095..5199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19463.5411.1

>prot_H-elongata_contig19463.5411.1 ID=prot_H-elongata_contig19463.5411.1|Name=mRNA_H-elongata_contig19463.5411.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
AETEDGDAIEANVDVRDSLFFGNTAGERGGSIYSTVSEMELEDCNSTANS
ATLGGSLYMSSSTYMMTDCRFWGDYNAVSTGATIFSVESDITAKGVTFSD
THNGSTMFAIFAGWDSTLEAQNCSFVGWIGSNVVLADSTGSLRLDACDFS
DSPA
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mRNA from alignment at H-elongata_contig19463:3485..5199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19463.5411.1 ID=mRNA_H-elongata_contig19463.5411.1|Name=mRNA_H-elongata_contig19463.5411.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1715bp|location=Sequence derived from alignment at H-elongata_contig19463:3485..5199- (Himanthalia elongata Himel1 dioecious)
GCTGAAACTGAAGACGGTGATGCAATAGAAGCCAATGTGGATGTCCGCGA
CAGTCTATTTTTTGGGAACACCGCTGGGGAAAGGGGCGGGTCGATATACT
CCACGGTGAGGAAAAAATCAACAGAGGAACATCAGGGTCAGGGTCAGGAT
TTGAGGTTTTGGCAAGTGGATGTTTCGATTTTCTACCAACCTTTGGTAAT
GTAATGTTATATAGTATAATGTAATGTAATGTAATGTGCATTGTTGGAAT
TGTTTGTCCGATGTAACCGACAGCATGTAGGCATGTATGTAGGCATGTTC
ACTGAAACCTCCTGCCCGGGATGGGATGGGATGGGATGGCATCGACCTGT
TGGTATTTTGGCATGTTGGCAGGTTTCGGAAATGGAGCTTGAGGATTGCA
ACTCCACCGCTAACAGCGCCACCCTCGGAGGGTCGCTCTACATGTCTAGC
AGCACCTACATGATGACTGATTGCCGTTTTTGGGGTGATTACAACGCTGT
GAGTCCCACGGGAAATGAATGAAGGGAATAGTTAATGCATTCATGTATTA
ATGAATTGATTCGTGCATTAATTAACGCCTTCCATCTACCTTCCCGTCCC
TTGCCTTCTCTGTACAACATTGAGGGTCTACCTTACCCCAACCCTTTATC
CTTACGGTTAGGGTTAGGGTTAGGCCAATATATCCGGTAACCTTAGGGCG
CTTGTAGCGATGACAGATGTAATGGCCTCTCAATTGGCGCCGGTCCGAGA
GCCCCGGACAAATTTACCCCCACCCCGGATTAAAACGCCTCCTGGGTGAG
GCTGAGGGTGAAGGTGACGACTGACGAGGACCGGTTGAACGTCTGTCTTT
CCCCAACCTTTGTATCGTTTGTTTCTGAAGGTATCGACGGGCGCCACGAT
TTTTTCCGTGGAGTCCGACATCACTGCGAAGGGGGTGACCTTCTCCGACA
CACACAACGGGTCGACGATGTTTGCCATATTTGCCGGTTGGGACTCGACT
CTGGAAGCACAAAACTGCTCGTTTGTCGGTTGGATCGGCAGCAACGTGGT
GGGTGTCGTATGATACTGTTTTATTGCTACAGTATTTTTATATTGTTTCC
TATCCATCCTCGGCGTTTTGGGTTAGGGTTAGCCTTAGGGTTAGGGTTAG
GGTTGTAACGGAAGGAAAGCAGCTCTGGCTTCTGGTTCCCTATTGTAGGC
TACCGCTGATGTTTTGAGTAAAGTAAGGTACACTCTTAATATAGTATAGA
CTAGTAAATATTACGGTACAGTATAGGGCAGTACATTATAGTACATCATG
GGGCACTACAGTACAGTATAGTACTTTATAGTACATTATAGTATACAGTA
GGCGAGAGTCGCCATTTTGAGCAAAAACGATAACCTTAAACCTAACCCTA
AGAGAAGTATTTCAAGTGATGTTGACATTGAACACGTTGAACACATCGAA
GACTATTTAGACTAACACTAACGATTATACCAACTATTCCACATATATTT
CACACGAGTAATATACTAATATGTGTTGCATGGTACCGTGGTATGTGGTA
TGTGGTATACTAATAGTATTAATAATTATAATAGGCGCTATGTATTAATA
TATGTTATACCGCATGTCGCAATAGTACCGTGTACCGTGGTGTAATAATA
GGTACTCGCGGACAGCACGGGATCCTTGAGGCTAGACGCATGTGACTTCA
GCGACAGCCCGGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig19463:3485..5199-

>mRNA_H-elongata_contig19463.5411.1 ID=mRNA_H-elongata_contig19463.5411.1|Name=mRNA_H-elongata_contig19463.5411.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig19463:3485..5199- (Himanthalia elongata Himel1 dioecious)
GCTGAAACTGAAGACGGTGATGCAATAGAAGCCAATGTGGATGTCCGCGA
CAGTCTATTTTTTGGGAACACCGCTGGGGAAAGGGGCGGGTCGATATACT
CCACGGCTGAAACTGAAGACGGTGATGCAATAGAAGCCAATGTGGATGTC
CGCGACAGTCTATTTTTTGGGAACACCGCTGGGGAAAGGGGCGGGTCGAT
ATACTCCACGGTTTCGGAAATGGAGCTTGAGGATTGCAACTCCACCGCTA
ACAGCGCCACCCTCGGAGGGTCGCTCTACATGTCTAGCAGCACCTACATG
ATGACTGATTGCCGTTTTTGGGGTGATTACAACGCTGTTTCGGAAATGGA
GCTTGAGGATTGCAACTCCACCGCTAACAGCGCCACCCTCGGAGGGTCGC
TCTACATGTCTAGCAGCACCTACATGATGACTGATTGCCGTTTTTGGGGT
GATTACAACGCTGTATCGACGGGCGCCACGATTTTTTCCGTGGAGTCCGA
CATCACTGCGAAGGGGGTGACCTTCTCCGACACACACAACGGGTCGACGA
TGTTTGCCATATTTGCCGGTTGGGACTCGACTCTGGAAGCACAAAACTGC
TCGTTTGTCGGTTGGATCGGCAGCAACGTGGTATCGACGGGCGCCACGAT
TTTTTCCGTGGAGTCCGACATCACTGCGAAGGGGGTGACCTTCTCCGACA
CACACAACGGGTCGACGATGTTTGCCATATTTGCCGGTTGGGACTCGACT
CTGGAAGCACAAAACTGCTCGTTTGTCGGTTGGATCGGCAGCAACGTGGT
ACTCGCGGACAGCACGGGATCCTTGAGGCTAGACGCATGTGACTTCAGCG
ACAGCCCGGCTGTACTCGCGGACAGCACGGGATCCTTGAGGCTAGACGCA
TGTGACTTCAGCGACAGCCCGGCT
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