prot_H-elongata_contig19463.5411.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19463.5411.1
Unique Nameprot_H-elongata_contig19463.5411.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length154
Homology
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BLAST of mRNA_H-elongata_contig19463.5411.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 8.380e-28
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 0 
Query:   37 SEMELEDCNSTANSATLGGSLYMSSSTYMMTDCRFWGDYNAVSTGATIFSVESDITAKGVTFSDTHNGSTMFAIFAGWDSTLEAQNCSFVGWIGSNVVLADSTGSLRLDACDFSDSPA 154
            S +E++DCNST+NSATLGGS+YMS S   +  C F GD   V TGA ++++++ + A+   F DT N + M A+ AG  +  EAQ+C F+GW G+NVVLAD TG L LD CDFS+S A
Sbjct:   91 SMIEMQDCNSTSNSATLGGSIYMSRSELDLRKCLFVGD--TVPTGAIVYTLDAKVRARDSIFEDTTNNAGMLAVQAGSHTEFEAQDCYFIGWTGTNVVLADQTGVLHLDGCDFSESTA 206
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BLAST of mRNA_H-elongata_contig19463.5411.1 vs. uniprot
Match: A0A6H5JUM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 5.030e-12
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 0 
Query:   10 EANVDV--RDSLFFGNTAGERGGSIYS-TVSEMELEDCNSTANSATLGGSLYMSSSTYMMTDCRFWGD 74
            E++VD+  +++ F GN AGERGGS+YS T S +E++DCNST+NSATLGGS+YMS S   + +C F GD
Sbjct:  628 ESSVDLLCQNTTFVGNVAGERGGSLYSNTDSRIEMQDCNSTSNSATLGGSIYMSRSELELRNCLFVGD 695
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19463.5411.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRF7_ECTSI8.380e-2851.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUM3_9PHAE5.030e-1257.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 19..35
e-value: 9.3E-4
score: 17.0
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 11..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19463contigH-elongata_contig19463:3486..5199 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19463.5411.1mRNA_H-elongata_contig19463.5411.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19463 3485..5199 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19463.5411.1 ID=prot_H-elongata_contig19463.5411.1|Name=mRNA_H-elongata_contig19463.5411.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
AETEDGDAIEANVDVRDSLFFGNTAGERGGSIYSTVSEMELEDCNSTANS
ATLGGSLYMSSSTYMMTDCRFWGDYNAVSTGATIFSVESDITAKGVTFSD
THNGSTMFAIFAGWDSTLEAQNCSFVGWIGSNVVLADSTGSLRLDACDFS
DSPA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence