mRNA_H-elongata_contig194457.5402.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Match: D8LFI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI) HSP 1 Score: 246 bits (628), Expect = 6.170e-73 Identity = 124/138 (89.86%), Postives = 132/138 (95.65%), Query Frame = 1
Query: 1 VVDAAQAALVQVLITNRQLKEKSGMQKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSSWFNVTLGDKLFGYLRQWAEPAKLQSLLDPKGWKPGEEPEVAAAILGLFHLLPHSPKFLDQLVKLTLKLESVLHR 414
VVDAAQAALVQV+ TNRQ K+KSGM KDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLS+WFNVTLGDKLFGYLRQW EP KLQ+L DPKGWKPGEEP+VAAAI+GLFHLLPHSPKFLDQLVKLTL+LE+VLHR
Sbjct: 1722 VVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKGWKPGEEPDVAAAIMGLFHLLPHSPKFLDQLVKLTLQLETVLHR 1859
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Match: A0A6H5KAF7_9PHAE (FAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF7_9PHAE) HSP 1 Score: 246 bits (627), Expect = 8.390e-73 Identity = 124/138 (89.86%), Postives = 131/138 (94.93%), Query Frame = 1
Query: 1 VVDAAQAALVQVLITNRQLKEKSGMQKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSSWFNVTLGDKLFGYLRQWAEPAKLQSLLDPKGWKPGEEPEVAAAILGLFHLLPHSPKFLDQLVKLTLKLESVLHR 414
VVDAAQAALVQV+ TNRQ K+KSGM KDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLS+WFNVTLGDKLFGYLRQW EP KLQ L DPKGWKPGEEP+VAAAI+GLFHLLPHSPKFLDQLVKLTL+LE+VLHR
Sbjct: 802 VVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPEKLQGLPDPKGWKPGEEPDVAAAIMGLFHLLPHSPKFLDQLVKLTLQLEAVLHR 939
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Match: A0A6N2MXS7_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2MXS7_SALVM) HSP 1 Score: 135 bits (339), Expect = 1.440e-35 Identity = 73/121 (60.33%), Postives = 90/121 (74.38%), Query Frame = 1
Query: 49 RQLKEKSGMQKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSSWFNVTLGDKLFGYLRQWAEPAKLQSLLDPKGWKPGEEPEVAAAILGLFHLLPHSP-KFLDQLVKLTLKLESVL 408
RQ+ + M K+LLQS LRP+L NL H + LS+PLLQGL+RLL LLSSWFNVTLG KL +L++W EP KL + K WK GEEP++AAAI+ LFHLLPH+ KFLD+LV L + LE L
Sbjct: 211 RQVINQQRMPKELLQSSLRPILVNLAHTKNLSMPLLQGLARLLELLSSWFNVTLGGKLLEHLKKWMEPDKLSQSI--KSWKAGEEPKIAAAIIELFHLLPHAASKFLDELVTLNIDLEGAL 329
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Match: A0A6N2LRE2_SALVM (Uncharacterized protein (Fragment) n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2LRE2_SALVM) HSP 1 Score: 129 bits (325), Expect = 2.350e-35 Identity = 70/113 (61.95%), Postives = 85/113 (75.22%), Query Frame = 1
Query: 73 MQKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSSWFNVTLGDKLFGYLRQWAEPAKLQSLLDPKGWKPGEEPEVAAAILGLFHLLPHSP-KFLDQLVKLTLKLESVL 408
M K+LLQS LRP+L NL H + LS+PLLQGL+RLL LLSSWFNVTLG KL +L++W EP KL + K WK EEP++AAAI+ LFHLLPH+ KFLD+LV L + LE L
Sbjct: 40 MPKELLQSSLRPILVNLAHTKNLSMPLLQGLARLLELLSSWFNVTLGGKLLEHLKKWMEPDKLSQSI--KSWKASEEPKIAAAIIELFHLLPHAASKFLDELVTLNIDLEGAL 150
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Match: A0A6M2E7K4_9ROSI (Uncharacterized protein n=1 Tax=Populus davidiana TaxID=266767 RepID=A0A6M2E7K4_9ROSI) HSP 1 Score: 138 bits (348), Expect = 3.110e-35 Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 1
Query: 49 RQLKEKSGMQKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSSWFNVTLGDKLFGYLRQWAEPAKLQSLLDPKGWKPGEEPEVAAAILGLFHLLPHSP-KFLDQLVKLTLKLESVL 408
RQ+ + M KDLLQS LRP+L NL H + LS+PLLQGL+RLL LLSSWFNVTLG KL +L++W EP KL + K WK GEEP++AAAI+ LFHLLPH+ KFLD+LV LT+ LE L
Sbjct: 982 RQVINQQRMPKDLLQSSLRPILVNLAHTKNLSMPLLQGLARLLELLSSWFNVTLGGKLLEHLKKWMEPDKLSQSI--KSWKAGEEPKIAAAIIELFHLLPHAASKFLDELVTLTIDLEGAL 1100
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Match: A0A836XPR9_9ROSI (FAT domain-containing family protein n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836XPR9_9ROSI) HSP 1 Score: 138 bits (347), Expect = 4.210e-35 Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 1
Query: 49 RQLKEKSGMQKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSSWFNVTLGDKLFGYLRQWAEPAKLQSLLDPKGWKPGEEPEVAAAILGLFHLLPH-SPKFLDQLVKLTLKLESVL 408
RQ+ + M K+LLQS LRP+L NL H + LS+PLLQGL+RLL LLSSWFNVTLG KL +L++W EP KL + K WK GEEP++AAAI+ LFHLLPH S KFLD+LV LT+ LE L
Sbjct: 1955 RQVINQQRMPKELLQSSLRPILVNLAHTKNLSMPLLQGLARLLELLSSWFNVTLGGKLLEHLKKWMEPDKLSQSI--KSWKAGEEPKIAAAIIELFHLLPHASSKFLDELVTLTIDLEGAL 2073
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Match: A0A1J3I0L9_NOCCA (Putative transcription-associated protein 1 (Fragment) n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3I0L9_NOCCA) HSP 1 Score: 130 bits (326), Expect = 6.050e-35 Identity = 71/121 (58.68%), Postives = 90/121 (74.38%), Query Frame = 1
Query: 49 RQLKEKSGMQKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSSWFNVTLGDKLFGYLRQWAEPAKLQSLLDPKGWKPGEEPEVAAAILGLFHLLP-HSPKFLDQLVKLTLKLESVL 408
RQ+ + M K+LLQS LRP+L NL H + L++PLLQGL+RLL LLS+WFNVTLG KL +L++W EP KL K WK GEEP++AAAI+ LFHLLP + KFLD+LV LT+ LE+ L
Sbjct: 2 RQVINQQRMPKELLQSSLRPILVNLAHTKNLNMPLLQGLARLLELLSNWFNVTLGVKLLEHLKKWLEPEKLAQ--SQKSWKAGEEPKIAAAIIELFHLLPLAASKFLDELVTLTIDLEAAL 120
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Match: A0A078JX81_BRANA (BnaCnng66780D protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078JX81_BRANA) HSP 1 Score: 135 bits (341), Expect = 1.000e-34 Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query: 49 RQLKEKSGMQKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSSWFNVTLGDKLFGYLRQWAEPAKLQSLLDPKGWKPGEEPEVAAAILGLFHLLPHSP-KFLDQLVKLTLKLESVL 408
RQ+ + M K+LLQS LRP+L NL H + LS+PLLQGL+RLL LLS+WFNVTLG KL +L++W EP KL K WK GEEP++AAAI+ LFHLLPH+ KFLD+LV LT+ LE+ L
Sbjct: 65 RQVINQQRMPKELLQSSLRPILVNLAHTKNLSMPLLQGLARLLELLSNWFNVTLGGKLLEHLKKWLEPEKLAQ--SQKSWKAGEEPKIAAAIIELFHLLPHAASKFLDELVTLTIDLEAAL 183
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Match: A0A6N2KY14_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KY14_SALVM) HSP 1 Score: 137 bits (344), Expect = 1.050e-34 Identity = 75/119 (63.03%), Postives = 90/119 (75.63%), Query Frame = 1
Query: 49 RQLKEKSGMQKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSSWFNVTLGDKLFGYLRQWAEPAKLQSLLDPKGWKPGEEPEVAAAILGLFHLLPHSP-KFLDQLVKLTLKLES 402
RQ+ + M K+LLQS LRP+L NL H + LSLPLLQGL+RLL LLSSWFNVTLG KL +L++W EP KL L K WK GEEP++AAAI+ LFHLLPH+ KFLD+LV LT+ LE
Sbjct: 1395 RQVISQQKMPKELLQSSLRPILVNLAHTKNLSLPLLQGLARLLELLSSWFNVTLGGKLLEHLKKWLEPEKLAQSL--KSWKAGEEPKIAAAIIELFHLLPHAASKFLDELVTLTIDLEG 1511
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Match: A0A836XR71_9ROSI (FAT domain-containing family protein n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836XR71_9ROSI) HSP 1 Score: 137 bits (344), Expect = 1.060e-34 Identity = 74/121 (61.16%), Postives = 91/121 (75.21%), Query Frame = 1
Query: 49 RQLKEKSGMQKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSSWFNVTLGDKLFGYLRQWAEPAKLQSLLDPKGWKPGEEPEVAAAILGLFHLLPHSP-KFLDQLVKLTLKLESVL 408
RQ+ + M K+LLQS LRP+L NL H + LS+PLLQGL+RLL LLSSWFNVTLG KL +L++W EP KL + K WK GEEP++AAAI+ LFHLLPH+ KFLD+LV LT+ LE L
Sbjct: 1393 RQVINQQRMPKELLQSSLRPILVNLAHTKNLSMPLLQGLARLLELLSSWFNVTLGGKLLEHLKKWMEPDKLSQSI--KSWKAGEEPKIAAAIIELFHLLPHAASKFLDELVTLTIDLEGAL 1511 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194457.5402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig194457.5402.1 >prot_H-elongata_contig194457.5402.1 ID=prot_H-elongata_contig194457.5402.1|Name=mRNA_H-elongata_contig194457.5402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp VVDAAQAALVQVLITNRQLKEKSGMQKDLLQSCLRPVLKNLTHIQKLSLPback to top mRNA from alignment at H-elongata_contig194457:190..1054- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig194457.5402.1 ID=mRNA_H-elongata_contig194457.5402.1|Name=mRNA_H-elongata_contig194457.5402.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=865bp|location=Sequence derived from alignment at H-elongata_contig194457:190..1054- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig194457:190..1054- >mRNA_H-elongata_contig194457.5402.1 ID=mRNA_H-elongata_contig194457.5402.1|Name=mRNA_H-elongata_contig194457.5402.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig194457:190..1054- (Himanthalia elongata Himel1 dioecious)back to top |