mRNA_H-elongata_contig19413.5394.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI) HSP 1 Score: 145 bits (367), Expect = 1.070e-38 Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 1
Query: 1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
+VW ML LPY DRF LYGAWRGHG+E+ L VKH QY VAEIA+GAEISRLIK LTSDNV++MARKLGKSSH HPL+FAEK LNQLE
Sbjct: 928 EVWNMLAELPYLDRFMLYGAWRGHGMEKYALGVKHPQYAVAEIAAGAEISRLIKMLTSDNVKDMARKLGKSSHSHPLLFAEKALNQLE 1015
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A1Z5JLE1_FISSO (THO complex subunit 2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLE1_FISSO) HSP 1 Score: 68.6 bits (166), Expect = 1.520e-11 Identity = 30/90 (33.33%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 4 VWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQ---YVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
+WG+L+ +PY R+KLY AWRG GLE+ L +++ + E+ +G +K L+ D R+++R + + PL+ +LNQ+E
Sbjct: 451 LWGVLQEIPYRRRYKLYAAWRGKGLEKAALREHNTKPIWLIRGELEAGKSARYSLKRLSKDTYRDISRSIAQVCFSQPLVVFTTILNQIE 540
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: F0YI77_AURAN (THO complex subunit 2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI77_AURAN) HSP 1 Score: 67.0 bits (162), Expect = 5.340e-11 Identity = 29/90 (32.22%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSD--NVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
+VW LPY +R LY AWRG G++R + +KH + AE +G + + +K + ++ N +++ R L K++H +P + +L+Q+E
Sbjct: 776 EVWAATRCLPYCERHLLYKAWRGRGVDRTAIGLKHFEVARAECEAGHDARQALKRVANEKKNAKHVGRALAKTAHSNPFVVFHIILSQIE 865
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: F4RRE9_MELLP (THO complex subunit 2 n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4RRE9_MELLP) HSP 1 Score: 65.1 bits (157), Expect = 2.550e-10 Identity = 28/87 (32.18%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 4 VWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
VWG+LE PYE R+ +YG W+ + ++ + + V + + E R++KT+TS+N++ +R LGK + +P I L+Q++
Sbjct: 690 VWGILEKFPYESRYMIYGEWK------ERIYNRIPELKVQRVKADNETKRVLKTMTSENLKEKSRALGKLASSNPCIVFNAALHQVQ 770
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A316UFM3_9BASI (THO complex subunit 2 n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316UFM3_9BASI) HSP 1 Score: 64.7 bits (156), Expect = 3.480e-10 Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
++W +L+ LPYE+RF LYG W+ R V++ Q + A G ++K ++ DN++ R L K+SH +PLIF LNQ++
Sbjct: 717 ELWSLLQVLPYEERFTLYGEWKNELYRRPE--VRYRQMETEKEAKG-----ILKRISKDNLKISGRALAKASHANPLIFFTVALNQVQ 797
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A2H9TI66_9FUNG (THO complex subunit 2 n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TI66_9FUNG) HSP 1 Score: 62.4 bits (150), Expect = 2.240e-9 Identity = 27/88 (30.68%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
++W + + PY RF +YG WR ++ K+S+ +A+ A+I R+++ LT +NVR R + K +H +P++ +L QL+
Sbjct: 461 EIWDIFKKYPYATRFAVYGNWRNE------MYAKNSEMTLAKSIVLADIRRVMRRLTRENVRQYGRLIAKLAHSNPVVVFPVILEQLQ 542
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: D3B7H9_POLPP (THO complex subunit 2 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B7H9_POLPP) HSP 1 Score: 62.4 bits (150), Expect = 2.260e-9 Identity = 27/88 (30.68%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
+VW +L + Y R+ LY WR ++ K+ +A+ AEI ++++ ++ +NV+ + R +GK SH HP+I E V++ +E
Sbjct: 518 EVWSILGGMNYHVRYNLYAEWRA-------IYSKYLPLAIAKAEVTAEIRKILRRISKENVKQLGRTIGKLSHLHPMIVLEAVVSSVE 598
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A316YN76_9BASI (THO complex subunit 2 n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YN76_9BASI) HSP 1 Score: 60.5 bits (145), Expect = 1.080e-8 Identity = 28/88 (31.82%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
+VW ++ LPY +R+ LYG W+ +R L V+ ++ + E ++K ++SDN++ R L K+SH +P +F LNQ++
Sbjct: 684 EVWLIIRQLPYTERYALYGEWKYSIYKRPELRVRQAE-------TEKEAKGILKRISSDNLKLSGRALAKASHANPTVFFTVALNQVQ 764
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A7S1NP01_9EUGL (THO complex subunit 2 (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NP01_9EUGL) HSP 1 Score: 55.5 bits (132), Expect = 6.160e-7 Identity = 24/86 (27.91%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQ 258
++W +++ LPYE RF++YGA++ G E + + ++A++ + S + K + ++ R L K +H +PL+ EK++ Q
Sbjct: 474 ELWDVIKTLPYEQRFRIYGAFQLEGYEPP-----NHRLLLAKVQATRATSDICKRTAKETTKSFGRSLAKIAHCNPLVAFEKIIEQ 554
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: UPI001FB0EACE (THO complex subunit 2 isoform X2 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0EACE) HSP 1 Score: 54.7 bits (130), Expect = 1.150e-6 Identity = 25/87 (28.74%), Postives = 46/87 (52.87%), Query Frame = 1
Query: 4 VWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
+W ++ LPYE R++LYG W ER + +VA + + R++K L +N++ + R + K +H P+ ++NQ+E
Sbjct: 529 IWEVMNLLPYEARYRLYGEWEKDD-ERTPM------ILVARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHASPMTVLRTIVNQIE 608 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19413.5394.1 >prot_H-elongata_contig19413.5394.1 ID=prot_H-elongata_contig19413.5394.1|Name=mRNA_H-elongata_contig19413.5394.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKback to top mRNA from alignment at H-elongata_contig19413:1028..1860- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19413.5394.1 ID=mRNA_H-elongata_contig19413.5394.1|Name=mRNA_H-elongata_contig19413.5394.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=833bp|location=Sequence derived from alignment at H-elongata_contig19413:1028..1860- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19413:1028..1860- >mRNA_H-elongata_contig19413.5394.1 ID=mRNA_H-elongata_contig19413.5394.1|Name=mRNA_H-elongata_contig19413.5394.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig19413:1028..1860- (Himanthalia elongata Himel1 dioecious)back to top |