prot_H-elongata_contig19413.5394.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19413.5394.1
Unique Nameprot_H-elongata_contig19413.5394.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.300e-36
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 0
Query:    1 MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 84
            ML  LPY DRF LYGAWRGHG+E+  L VKH QY VAEIA+GAEISRLIK LTSDNV++MARKLGKSSH HPL+FAEK LNQLE
Sbjct:  932 MLAELPYLDRFMLYGAWRGHGMEKYALGVKHPQYAVAEIAAGAEISRLIKMLTSDNVKDMARKLGKSSHSHPLLFAEKALNQLE 1015          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: F0YI77_AURAN (THO complex subunit 2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI77_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 1.930e-9
Identity = 27/82 (32.93%), Postives = 50/82 (60.98%), Query Frame = 0
Query:    5 LPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSD--NVRNMARKLGKSSHGHPLIFAEKVLNQLE 84
            LPY +R  LY AWRG G++R  + +KH +   AE  +G +  + +K + ++  N +++ R L K++H +P +    +L+Q+E
Sbjct:  784 LPYCERHLLYKAWRGRGVDRTAIGLKHFEVARAECEAGHDARQALKRVANEKKNAKHVGRALAKTAHSNPFVVFHIILSQIE 865          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A316UFM3_9BASI (THO complex subunit 2 n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316UFM3_9BASI)

HSP 1 Score: 59.7 bits (143), Expect = 1.720e-8
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 0
Query:    1 MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 84
            +L+ LPYE+RF LYG W+     R    V++ Q    + A G     ++K ++ DN++   R L K+SH +PLIF    LNQ++
Sbjct:  721 LLQVLPYEERFTLYGEWKNELYRRPE--VRYRQMETEKEAKG-----ILKRISKDNLKISGRALAKASHANPLIFFTVALNQVQ 797          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A2H9TI66_9FUNG (THO complex subunit 2 n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TI66_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 1.520e-7
Identity = 26/84 (30.95%), Postives = 47/84 (55.95%), Query Frame = 0
Query:    1 MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 84
            + +  PY  RF +YG WR        ++ K+S+  +A+    A+I R+++ LT +NVR   R + K +H +P++    +L QL+
Sbjct:  465 IFKKYPYATRFAVYGNWRNE------MYAKNSEMTLAKSIVLADIRRVMRRLTRENVRQYGRLIAKLAHSNPVVVFPVILEQLQ 542          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: F4RRE9_MELLP (THO complex subunit 2 n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4RRE9_MELLP)

HSP 1 Score: 57.0 bits (136), Expect = 1.530e-7
Identity = 25/84 (29.76%), Postives = 48/84 (57.14%), Query Frame = 0
Query:    1 MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 84
            +LE  PYE R+ +YG W+      + ++ +  +  V  + +  E  R++KT+TS+N++  +R LGK +  +P I     L+Q++
Sbjct:  693 ILEKFPYESRYMIYGEWK------ERIYNRIPELKVQRVKADNETKRVLKTMTSENLKEKSRALGKLASSNPCIVFNAALHQVQ 770          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: D3B7H9_POLPP (THO complex subunit 2 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B7H9_POLPP)

HSP 1 Score: 56.2 bits (134), Expect = 2.860e-7
Identity = 25/84 (29.76%), Postives = 47/84 (55.95%), Query Frame = 0
Query:    1 MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 84
            +L  + Y  R+ LY  WR        ++ K+    +A+    AEI ++++ ++ +NV+ + R +GK SH HP+I  E V++ +E
Sbjct:  522 ILGGMNYHVRYNLYAEWRA-------IYSKYLPLAIAKAEVTAEIRKILRRISKENVKQLGRTIGKLSHLHPMIVLEAVVSSVE 598          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A316YN76_9BASI (THO complex subunit 2 n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YN76_9BASI)

HSP 1 Score: 55.8 bits (133), Expect = 3.920e-7
Identity = 26/84 (30.95%), Postives = 47/84 (55.95%), Query Frame = 0
Query:    1 MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 84
            ++  LPY +R+ LYG W+    +R  L V+ ++       +  E   ++K ++SDN++   R L K+SH +P +F    LNQ++
Sbjct:  688 IIRQLPYTERYALYGEWKYSIYKRPELRVRQAE-------TEKEAKGILKRISSDNLKLSGRALAKASHANPTVFFTVALNQVQ 764          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A7S1NP01_9EUGL (THO complex subunit 2 (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NP01_9EUGL)

HSP 1 Score: 50.8 bits (120), Expect = 2.250e-5
Identity = 23/82 (28.05%), Postives = 46/82 (56.10%), Query Frame = 0
Query:    1 MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQ 82
            +++ LPYE RF++YGA++  G E       + + ++A++ +    S + K    +  ++  R L K +H +PL+  EK++ Q
Sbjct:  478 VIKTLPYEQRFRIYGAFQLEGYEPP-----NHRLLLAKVQATRATSDICKRTAKETTKSFGRSLAKIAHCNPLVAFEKIIEQ 554          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: UPI001FB0EACE (THO complex subunit 2 isoform X2 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0EACE)

HSP 1 Score: 50.1 bits (118), Expect = 4.210e-5
Identity = 24/84 (28.57%), Postives = 44/84 (52.38%), Query Frame = 0
Query:    1 MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 84
            ++  LPYE R++LYG W     ER  +       +VA   +  +  R++K L  +N++ + R + K +H  P+     ++NQ+E
Sbjct:  532 VMNLLPYEARYRLYGEWEKDD-ERTPM------ILVARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHASPMTVLRTIVNQIE 608          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: UPI001FB0B757 (THO complex subunit 2 isoform X1 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0B757)

HSP 1 Score: 50.1 bits (118), Expect = 4.240e-5
Identity = 24/84 (28.57%), Postives = 44/84 (52.38%), Query Frame = 0
Query:    1 MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 84
            ++  LPYE R++LYG W     ER  +       +VA   +  +  R++K L  +N++ + R + K +H  P+     ++NQ+E
Sbjct:  532 VMNLLPYEARYRLYGEWEKDD-ERTPM------ILVARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHASPMTVLRTIVNQIE 608          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LD24_ECTSI1.300e-3678.57THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
F0YI77_AURAN1.930e-932.93THO complex subunit 2 n=1 Tax=Aureococcus anophage... [more]
A0A316UFM3_9BASI1.720e-836.90THO complex subunit 2 n=1 Tax=Pseudomicrostroma gl... [more]
A0A2H9TI66_9FUNG1.520e-730.95THO complex subunit 2 n=1 Tax=Paramicrosporidium s... [more]
F4RRE9_MELLP1.530e-729.76THO complex subunit 2 n=1 Tax=Melampsora larici-po... [more]
D3B7H9_POLPP2.860e-729.76THO complex subunit 2 n=1 Tax=Polysphondylium pall... [more]
A0A316YN76_9BASI3.920e-730.95THO complex subunit 2 n=1 Tax=Acaromyces ingoldii ... [more]
A0A7S1NP01_9EUGL2.250e-528.05THO complex subunit 2 (Fragment) n=1 Tax=Eutreptie... [more]
UPI001FB0EACE4.210e-528.57THO complex subunit 2 isoform X2 n=1 Tax=Impatiens... [more]
UPI001FB0B7574.240e-528.57THO complex subunit 2 isoform X1 n=1 Tax=Impatiens... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21597:SF0THO COMPLEX SUBUNIT 2coord: 2..84
IPR040007THO complex subunit 2PANTHERPTHR21597THO2 PROTEINcoord: 2..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19413contigH-elongata_contig19413:1028..1848 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19413.5394.1mRNA_H-elongata_contig19413.5394.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19413 1028..1860 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19413.5394.1 ID=prot_H-elongata_contig19413.5394.1|Name=mRNA_H-elongata_contig19413.5394.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIK
TLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040007Tho2