mRNA_H-elongata_contig19413.5394.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19413.5394.1
Unique NamemRNA_H-elongata_contig19413.5394.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.070e-38
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
            +VW ML  LPY DRF LYGAWRGHG+E+  L VKH QY VAEIA+GAEISRLIK LTSDNV++MARKLGKSSH HPL+FAEK LNQLE
Sbjct:  928 EVWNMLAELPYLDRFMLYGAWRGHGMEKYALGVKHPQYAVAEIAAGAEISRLIKMLTSDNVKDMARKLGKSSHSHPLLFAEKALNQLE 1015          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A1Z5JLE1_FISSO (THO complex subunit 2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLE1_FISSO)

HSP 1 Score: 68.6 bits (166), Expect = 1.520e-11
Identity = 30/90 (33.33%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    4 VWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQ---YVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
            +WG+L+ +PY  R+KLY AWRG GLE+  L   +++    +  E+ +G      +K L+ D  R+++R + +     PL+    +LNQ+E
Sbjct:  451 LWGVLQEIPYRRRYKLYAAWRGKGLEKAALREHNTKPIWLIRGELEAGKSARYSLKRLSKDTYRDISRSIAQVCFSQPLVVFTTILNQIE 540          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: F0YI77_AURAN (THO complex subunit 2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI77_AURAN)

HSP 1 Score: 67.0 bits (162), Expect = 5.340e-11
Identity = 29/90 (32.22%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSD--NVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
            +VW     LPY +R  LY AWRG G++R  + +KH +   AE  +G +  + +K + ++  N +++ R L K++H +P +    +L+Q+E
Sbjct:  776 EVWAATRCLPYCERHLLYKAWRGRGVDRTAIGLKHFEVARAECEAGHDARQALKRVANEKKNAKHVGRALAKTAHSNPFVVFHIILSQIE 865          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: F4RRE9_MELLP (THO complex subunit 2 n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4RRE9_MELLP)

HSP 1 Score: 65.1 bits (157), Expect = 2.550e-10
Identity = 28/87 (32.18%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 VWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
            VWG+LE  PYE R+ +YG W+      + ++ +  +  V  + +  E  R++KT+TS+N++  +R LGK +  +P I     L+Q++
Sbjct:  690 VWGILEKFPYESRYMIYGEWK------ERIYNRIPELKVQRVKADNETKRVLKTMTSENLKEKSRALGKLASSNPCIVFNAALHQVQ 770          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A316UFM3_9BASI (THO complex subunit 2 n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316UFM3_9BASI)

HSP 1 Score: 64.7 bits (156), Expect = 3.480e-10
Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
            ++W +L+ LPYE+RF LYG W+     R    V++ Q    + A G     ++K ++ DN++   R L K+SH +PLIF    LNQ++
Sbjct:  717 ELWSLLQVLPYEERFTLYGEWKNELYRRPE--VRYRQMETEKEAKG-----ILKRISKDNLKISGRALAKASHANPLIFFTVALNQVQ 797          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A2H9TI66_9FUNG (THO complex subunit 2 n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TI66_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 2.240e-9
Identity = 27/88 (30.68%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
            ++W + +  PY  RF +YG WR        ++ K+S+  +A+    A+I R+++ LT +NVR   R + K +H +P++    +L QL+
Sbjct:  461 EIWDIFKKYPYATRFAVYGNWRNE------MYAKNSEMTLAKSIVLADIRRVMRRLTRENVRQYGRLIAKLAHSNPVVVFPVILEQLQ 542          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: D3B7H9_POLPP (THO complex subunit 2 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B7H9_POLPP)

HSP 1 Score: 62.4 bits (150), Expect = 2.260e-9
Identity = 27/88 (30.68%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
            +VW +L  + Y  R+ LY  WR        ++ K+    +A+    AEI ++++ ++ +NV+ + R +GK SH HP+I  E V++ +E
Sbjct:  518 EVWSILGGMNYHVRYNLYAEWRA-------IYSKYLPLAIAKAEVTAEIRKILRRISKENVKQLGRTIGKLSHLHPMIVLEAVVSSVE 598          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A316YN76_9BASI (THO complex subunit 2 n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YN76_9BASI)

HSP 1 Score: 60.5 bits (145), Expect = 1.080e-8
Identity = 28/88 (31.82%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
            +VW ++  LPY +R+ LYG W+    +R  L V+ ++       +  E   ++K ++SDN++   R L K+SH +P +F    LNQ++
Sbjct:  684 EVWLIIRQLPYTERYALYGEWKYSIYKRPELRVRQAE-------TEKEAKGILKRISSDNLKLSGRALAKASHANPTVFFTVALNQVQ 764          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: A0A7S1NP01_9EUGL (THO complex subunit 2 (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NP01_9EUGL)

HSP 1 Score: 55.5 bits (132), Expect = 6.160e-7
Identity = 24/86 (27.91%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    1 KVWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQ 258
            ++W +++ LPYE RF++YGA++  G E       + + ++A++ +    S + K    +  ++  R L K +H +PL+  EK++ Q
Sbjct:  474 ELWDVIKTLPYEQRFRIYGAFQLEGYEPP-----NHRLLLAKVQATRATSDICKRTAKETTKSFGRSLAKIAHCNPLVAFEKIIEQ 554          
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Match: UPI001FB0EACE (THO complex subunit 2 isoform X2 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0EACE)

HSP 1 Score: 54.7 bits (130), Expect = 1.150e-6
Identity = 25/87 (28.74%), Postives = 46/87 (52.87%), Query Frame = 1
Query:    4 VWGMLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIKTLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE 264
            +W ++  LPYE R++LYG W     ER  +       +VA   +  +  R++K L  +N++ + R + K +H  P+     ++NQ+E
Sbjct:  529 IWEVMNLLPYEARYRLYGEWEKDD-ERTPM------ILVARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHASPMTVLRTIVNQIE 608          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19413.5394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD24_ECTSI1.070e-3877.27THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A1Z5JLE1_FISSO1.520e-1133.33THO complex subunit 2 n=2 Tax=Fistulifera solaris ... [more]
F0YI77_AURAN5.340e-1132.22THO complex subunit 2 n=1 Tax=Aureococcus anophage... [more]
F4RRE9_MELLP2.550e-1032.18THO complex subunit 2 n=1 Tax=Melampsora larici-po... [more]
A0A316UFM3_9BASI3.480e-1036.36THO complex subunit 2 n=1 Tax=Pseudomicrostroma gl... [more]
A0A2H9TI66_9FUNG2.240e-930.68THO complex subunit 2 n=1 Tax=Paramicrosporidium s... [more]
D3B7H9_POLPP2.260e-930.68THO complex subunit 2 n=1 Tax=Polysphondylium pall... [more]
A0A316YN76_9BASI1.080e-831.82THO complex subunit 2 n=1 Tax=Acaromyces ingoldii ... [more]
A0A7S1NP01_9EUGL6.160e-727.91THO complex subunit 2 (Fragment) n=1 Tax=Eutreptie... [more]
UPI001FB0EACE1.150e-628.74THO complex subunit 2 isoform X2 n=1 Tax=Impatiens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19413contigH-elongata_contig19413:1028..1860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue3.7e-30
Seed eggNOG ortholog2880.D8LD24
Preferred nameZC3H13
KEGG koko:K12837,ko:K12879
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
GOsGO:0001510,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016071,GO:0016556,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0034708,GO:0036396,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045293,GO:0046483,GO:0050789,GO:0050793,GO:0051239,GO:0065007,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:2000036
EggNOG free text desc.mRNA transport
EggNOG OGsKOG1874@1,KOG1874@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19413.5394.1prot_H-elongata_contig19413.5394.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19413 1028..1848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930105.330977-CDS-H-elongata_contig19413:1027..11651622930105.330977-CDS-H-elongata_contig19413:1027..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19413 1028..1165 -
1691679282.079291-CDS-H-elongata_contig19413:1027..11651691679282.079291-CDS-H-elongata_contig19413:1027..1165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19413 1028..1165 -
1622930105.3483603-CDS-H-elongata_contig19413:1734..18481622930105.3483603-CDS-H-elongata_contig19413:1734..1848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19413 1735..1848 -
1691679282.0913858-CDS-H-elongata_contig19413:1734..18481691679282.0913858-CDS-H-elongata_contig19413:1734..1848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19413 1735..1848 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930105.362318-UTR-H-elongata_contig19413:1848..18601622930105.362318-UTR-H-elongata_contig19413:1848..1860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19413 1849..1860 -
1691679282.0991695-UTR-H-elongata_contig19413:1848..18601691679282.0991695-UTR-H-elongata_contig19413:1848..1860Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19413 1849..1860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19413.5394.1

>prot_H-elongata_contig19413.5394.1 ID=prot_H-elongata_contig19413.5394.1|Name=mRNA_H-elongata_contig19413.5394.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MLENLPYEDRFKLYGAWRGHGLERQGLWVKHSQYVVAEIASGAEISRLIK
TLTSDNVRNMARKLGKSSHGHPLIFAEKVLNQLE
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mRNA from alignment at H-elongata_contig19413:1028..1860-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19413.5394.1 ID=mRNA_H-elongata_contig19413.5394.1|Name=mRNA_H-elongata_contig19413.5394.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=833bp|location=Sequence derived from alignment at H-elongata_contig19413:1028..1860- (Himanthalia elongata Himel1 dioecious)
AAGGTGTGGGGCATGCTCGAGAATCTGCCATATGAAGACCGTTTCAAGCT GTACGGAGCTTGGAGGGGCCACGGTTTGGAACGACAGGGTCTTTGGGTCA AACACTCCCAGTACGTGGTCGCCGAGGTCAGCACGATGTCGTTTATTACA AGTACAGTAGCATGTCGTTTATTACATTGCATCACATTATGCAGCTTTTA TATTATTTTTATTTAAAATACTTGGCTCATTCTAACTCTCCAAACCTCCA CACCTTCTTGTCACCGTAAGTGCAATCCAGGGAACCAACTATCAGAAAGC AGGAATAAGCATTGACAATAGGAATAATAAGCAGGAATAAGCATAGTGTA GTTTATGAACAATAATGGTACTAAAACAGTAAACTGTAACCGTTTAACGA GATTTGTCGTCTTTGCTCTCATAAAGGTGCATGCAATGTATGGGATAGGA TTGTAGAACGAAGCGCTTCGTTACTGATGTACAGGTACGGTACGGTACGG TACGGTACGGTACTCTAGTGAAACGTCGTTTGTATTATGAGTCGTAATAT TAATAGTCCTGTATTGGTTTAAATATTTTTGTATATACCAACCAGTACAT GTTTTAATAACTGGATGAATGACTGGATTGATACAGTCACTGTTTTAATA ACTGTTTTAATAACTGTTTGTGCTACACTTTGGTGATGAGGGCAGATCGC TTCCGGGGCCGAGATCTCAAGGCTGATTAAGACGCTGACATCGGATAATG TGAGAAACATGGCGCGCAAACTCGGCAAGTCGTCGCACGGACATCCCCTT ATCTTCGCCGAGAAGGTTCTGAATCAGCTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig19413:1028..1860-

>mRNA_H-elongata_contig19413.5394.1 ID=mRNA_H-elongata_contig19413.5394.1|Name=mRNA_H-elongata_contig19413.5394.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig19413:1028..1860- (Himanthalia elongata Himel1 dioecious)
ATGCTCGAGAATCTGCCATATGAAGACCGTTTCAAGCTGTACGGAGCTTG
GAGGGGCCACGGTTTGGAACGACAGGGTCTTTGGGTCAAACACTCCCAGT
ACGTGGTCGCCGAGATGCTCGAGAATCTGCCATATGAAGACCGTTTCAAG
CTGTACGGAGCTTGGAGGGGCCACGGTTTGGAACGACAGGGTCTTTGGGT
CAAACACTCCCAGTACGTGGTCGCCGAGATCGCTTCCGGGGCCGAGATCT
CAAGGCTGATTAAGACGCTGACATCGGATAATGTGAGAAACATGGCGCGC
AAACTCGGCAAGTCGTCGCACGGACATCCCCTTATCTTCGCCGAGAAGGT
TCTGAATCAGCTTGAGATCGCTTCCGGGGCCGAGATCTCAAGGCTGATTA
AGACGCTGACATCGGATAATGTGAGAAACATGGCGCGCAAACTCGGCAAG
TCGTCGCACGGACATCCCCTTATCTTCGCCGAGAAGGTTCTGAATCAGCT
TGAG
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