mRNA_H-elongata_contig19403.5390.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19403.5390.1 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI) HSP 1 Score: 406 bits (1044), Expect = 8.310e-130 Identity = 283/532 (53.20%), Postives = 321/532 (60.34%), Query Frame = 2
Query: 1001 AEEQGQRP-LLITIGPQCSGKTTLLRHLGQSGAAVTDVAIDDHPSVYFDIPLNLLLDGCESGSHEDETVGGLPLSSRLRDPGCVEIRLVASRLLGITPAEEFANGIQRCGGSKASPSALDALCGAVETAVSDNLVVSTPSVDVFIRESLFPEAISASLRRLAAAADKEWKIVAWGNTNTQARDFRGALEQAKSTGRPVRFLRWGHELPRVSLDELSRRNVYRFATTGRYVETAAIETALARVERLYASTNGGDSAELAFAAGFRMDASGRVSSLSSYSSSAAGDRGGAPPPRPGVSS--SEAG-STGHVERRKRRT---RRPSDTSPGRRGNPLEPGDVDLGGQAG---GRDGGL-KRGMPPAG----SEEMTPRQSSDSTG---------PYPASRGGGGLRSSVNFLGTPYYGRCGVVLGLAQAWCPRGGRRLAVGGSGRRR------------AVESPTVLFASEWKRMREWRRSGYSDDDIDPTMSSCYFSKPANSTGVLKRFDAGS-RNADLEEMELVRTISSIRQR 2485
AE RP LL+TIGPQC+GKT+LLR L VY IP LLL GC GS ED + PLS RL DPGCVE RLV RL G AEEFA + C G +ASP+A+ ALC AVE+AVSDN+ +STP+VDVF+RE+LFP+AIS+S RLAAAA E +VAWGNTNTQARD+RGALEQA+ TGRPVRFLRWGHELP +SL+ELSRRNV RFA TGRYVETAAIE ALARV++LYAST GGD A LA AAGF+MDASG V S SS PPR S S AG G ER RR +DTS G +GG G GRDG RG + T R+ + S G P PA+ G R ++ Y G LGLAQ W PRGG GGS RRR A PTV+F +EW R REWRR+GY+DDDIDP M SC+F PANSTGVL+R D G ADLEEMELVR I S RQR
Sbjct: 7 AEAATNRPALLVTIGPQCAGKTSLLRALAAKS------------EVYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRG-QASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSS-------------PPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGG--------IGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVPXXXXMAQPTPAA---GPDRFTIEGADRRRYEDTGAPLGLAQEWTPRGGT--GAGGSSRRRDHSDTGWGVGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFRQR 499
BLAST of mRNA_H-elongata_contig19403.5390.1 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE) HSP 1 Score: 412 bits (1059), Expect = 3.540e-128 Identity = 287/554 (51.81%), Postives = 321/554 (57.94%), Query Frame = 2
Query: 1004 EEQGQRP-LLITIGPQCSGKTTLLRHLGQSGAA--------------------------------VTDVAIDDHPSVYFDIPLNLLLDGCESGSHEDETVGGLPLSSRLRDPGCVEIRLVASRLLGITPAEEFANGIQRCGGSKASPSALDALCGAVETAVSDNLVVSTPSVDVFIRESLFPEAISASLRRLAAAADKEWKIVAWGNTNTQARDFRGALEQAKSTGRPVRFLRWGHELPRVSLDELSRRNVYRFATTGRYVETAAIETALARVERLYASTNGGDSAELAFAAGFRMDASGRVSSLSSYSSSAAGDRGGAPPPRPGVSSSEAGSTGHVERRKRRTRRPSDTSPGRRGNPLEPGDVDLGGQAGGRDGGL-KRGMPPAGSEEMTPRQSSDST-----------GPYPASRGGGGLRSSVNFLGTPY--YGRCGVVLGLAQAWCPRGGRRLAVGGSGRRRAVES------------PTVLFASEWKRMREWRRSGYSDDDIDPTMSSCYFSKPANSTGVLKRFDAGS-RNADLEEMELVRTISSIRQR 2485
E RP LL+TIGPQC+GKT+LLR L A V DV IDDHPSVY IP LLL GC G ED + LS RL DPGCVE RLVA RL G AEEFA + C G +ASP+A+ ALC AVE+AVSDN +STP+VDVF+RE+LFP+AIS+S RLAAAA E +VAWGNTNTQARD+RGALEQA+ TGRPVRFLRWGHELP +SL+ELSRRNV RFA TGRYVETAAIE ALARV++LYAST GGD A LA AAGF+MDASGRV S S PP R G S E + V R +DTS G G G GRDG RG GSE Q+S T P P +R LG Y G LGLAQ W PRGG GGS RRR PTV+F +EW R REWRR+GY+DDDIDP M SC+F PANSTGVL+R D G ADLEEMELVR I S+RQR
Sbjct: 278 EAAASRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRSVADVTIDDHPSVYHKIPTALLLGGCARGCPEDLLLARRSLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRG-QASPAAIAALCWAVESAVSDNGRISTPTVDVFVRENLFPDAISSSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPILSLEELSRRNVCRFACTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGRVHSQPS------------PPRRRGNGSWEKNTRRRVGGGGR-----ADTSAHSGG-----GIGSSEGVVRGRDGAWDNRG----GSETWFHDQASGRTMRREATSHSVPPPPPMARPIPAAGPDRFTLGADRRRYEYTGAPLGLAQEWTPRGGT--GAGGSSRRRDHSDTGGGAGGPEGVPPTVMFGNEWGRKREWRRTGYTDDDIDPEMGSCFFRTPANSTGVLRRSDLGEGTGADLEEMELVRRIKSLRQR 802
BLAST of mRNA_H-elongata_contig19403.5390.1 vs. uniprot
Match: A0A835Z5Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q0_9STRA) HSP 1 Score: 206 bits (525), Expect = 9.140e-54 Identity = 128/273 (46.89%), Postives = 163/273 (59.71%), Query Frame = 2
Query: 1022 PLLITIGPQCSGKTTLLRHLGQS--GAAVTDVAIDDHPSVYFDIPLNLLLDGCESGSHEDETVGGLPLSSRLRDPGCVEIRLVASRLLGITPAEEFANGIQRCGGSKASP----SALDALCGAVETAVSDNLVVSTPSVDVFIRESLFPEAISASLRRLAAAADKEWKIVAWGNTNTQARDFRGALEQAKSTGRPVRFLRWGHELPRVSLDELSRRNVYRFATTGRYVETAAIETALARVERLYASTNGGDSAELAFAAGFRMDASGRVSSLS 1822
PLLITIGPQC+GKTT L LGQS GA + DVAIDDHP VY+ +P LD +D + +S R+ D V LVA RL G+ A+EF Q + P + AVE AV+ L + TP+VD+F+ +P + S RRL + VAWGNTNT+++D+R ALE A++ RPVR+LRWGHELP V L +L R++ RFA TGRYV A+ AL RVE LYA T+GGD A L AAGF+M A RV ++S
Sbjct: 93 PLLITIGPQCAGKTTTLLALGQSLGGARICDVAIDDHPDVYYKLPTACALDPDSITPQQDVLLFDKTVSERMADYTVVGKCLVAKRLEGLLTADEFRE--QWLSSVEFYPYPDGEVEELWIAAVEAAVAAGLRMETPTVDLFVPNGHYPRGVRDSNRRLRQECSRHPGPVAWGNTNTKSKDYREALECAQAVNRPVRYLRWGHELPAVPLRDLFARDLRRFAATGRYVPPQAVAAALRRVEHLYARTDGGDPALLTAAAGFQMGAGARVRAVS 363
BLAST of mRNA_H-elongata_contig19403.5390.1 vs. uniprot
Match: A0A835YGB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB3_9STRA) HSP 1 Score: 182 bits (463), Expect = 4.120e-46 Identity = 115/267 (43.07%), Postives = 155/267 (58.05%), Query Frame = 2
Query: 1016 QRPLLITIGPQCSGKTTLLRHLGQSGAAVTDVAIDDHPSVYFDIPLNLLLDGCESGSHEDETVGGLPLSSRLRDPGCVEIRLVASRLLGITPAEEFANGIQRCGGSK--ASPSALDALCGAVETAVSDNLVVSTPSVDVFIRESLFPEAISASLRRLAAAADKEWKIVAWGNTNTQARDFRGALEQAKSTGRPVRFLRWGHELPRVSLDELSRRNVYRFATTGRYVETAAIETALARVERLYASTNGGDSAELAFAAGFRMDASGRV 1810
+ PLLITIGPQC+GKTT LR +G V DVAID+HP VY+++P +LD S + ED T+ G LS RL+ G LVA RL G+ + +F + G A +VE AV++ + + P+VD+F+ E P+ + L + VAWGNTNT+ARD+ AL A+ RPV F+R+GHE+P +S+ EL RN+ RFA TGR++ + A RV+ LYA T GG+ A LA AAGF MD GRV
Sbjct: 68 EHPLLITIGPQCAGKTTTLRKMG-----VFDVAIDEHPDVYYELPTAYILDPT-STTLEDVTIFGRRLSDRLQYTGVYANMLVAQRLEGLLSSAKFEAEWKAIAGPYLLADRDVDRIFLESVEAAVAEGVRLYAPTVDLFLPEGHAPKGMREHSVVLRYECHRRRGAVAWGNTNTRARDYAAALATAQECTRPVHFVRYGHEIPAISIRELFGRNLRRFAATGRFIPPQTMWAARQRVKHLYARTGGGEPARLAAAAGFIMDDEGRV 328
BLAST of mRNA_H-elongata_contig19403.5390.1 vs. uniprot
Match: W7TBP9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBP9_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.500e-21 Identity = 94/268 (35.07%), Postives = 124/268 (46.27%), Query Frame = 2
Query: 1025 LLITIGPQCSGKTTLLRHLGQSGAA----VTDVAIDDHPSVYFDIPLNLLLDGCESGSHE-------DETVGGLPLSSRLRDPGCVEIRLVASRLLGITPAEEFANGIQRCGGSKAS---------------PSALD--------ALCGAVETAVSDNLV--VSTPSVDVFIRESLF-----PEAISASLRRLAAAADKEWKIVAWGNTNTQARDFRGALEQAKSTGRPVRFLRWGHELPR-VSLDELSRRNVYRFATTGRYVETAAI 1702
LLIT+GPQC+GKTTLL+HL +S + + DVAIDD +Y +P+ L L+G D+ + G LSSR D VE RLV L G+ E ++ PS D AL A T + V V+T S LF P+AI S +RL + + AWGNTN++ARDF+ A+ A GR V F+RWG EL + V +EL RNV+R G+YV I
Sbjct: 89 LLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGRXXXXXXXXXXSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSXXXXXXXXXXXXXXXXXXCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPDLLPQAIRRSYQRLTRSLCGPGPV-AWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTI 355
BLAST of mRNA_H-elongata_contig19403.5390.1 vs. uniprot
Match: A0A7S3QJ42_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ42_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.810e-15 Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = 2
Query: 1400 VVSTPSVDVFIRESLFPEAISASLRRLAAAADKEW--KIVAWGNTNTQARDFRGALEQAKSTGRPVRFLRWGHELPRVSLDELSRRNVYRFATTGRYVETAAIETALARVERL 1732
++ TP +D+F+ +++F I + R A+ + ++WGNTNT+ ++ AL+ A+ GRPVRF+ WG LP+VS EL RRN RF GRY+ AI +L R+E+L
Sbjct: 305 LIKTPYIDMFVPQAIFRGGIDRAKRSFYELAEHAPIDQPISWGNTNTRPIEYVKALKAAEKFGRPVRFVAWGQRLPKVSRQELLRRNTARFRNNGRYIPAGAIAASLGRIEKL 417
BLAST of mRNA_H-elongata_contig19403.5390.1 vs. uniprot
Match: B8C738_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C738_THAPS) HSP 1 Score: 88.2 bits (217), Expect = 2.360e-14 Identity = 76/264 (28.79%), Postives = 117/264 (44.32%), Query Frame = 2
Query: 1010 QGQRPLLITIGPQCSGKTTLLRHL--------GQSGAAVT---DVAIDDHPSVYFDIPLNLLLDGC----ESGSHEDETVGGLPLSSRLRDPGCVEIRLVASRLLGITPAEEFA---NGIQRCGGSKASP-------SALDALCGAVETAVSDNL-----------------VVSTPSVDVFIRESLFPEAISASLRRL------AAAADKEWKIV----------------AWGNTNTQARDFRGALEQAKSTGRPVRFLRWG 1609
Q + P+ IT+GPQC GKTT+L+ L + G A T D+ IDD VYF +P+ L L E S ++++ G + R+ DP E++LV RL G A +F N Q+ G + S + + L AVE + N + +D+F+ ES+F +R ++A D+ +++ AWGNTNT+ R+F A+E A +GRPV F+ +G
Sbjct: 98 QSKGPIYITVGPQCCGKTTILKRLFGTVFHNNEEEGGASTGGLDITIDDQELVYFPVPIQLFLPDAALPSEQRSTSNQSILGKSVRDRVVDPSNNELKLVIQRLAGKLTAGDFIERLNNPQKNGQQQQSAPLQKNQKAVVADLVSAVEEVIKINTDPKGETTENSMFFAATKLTLPKQIDLFVVESIFRPRPLELMRNTKNNTPSSSALDEAQRLIKSISTDSSVHDSAAPLAWGNTNTRPREFLSAMEAATLSGRPVEFIVFG 361
BLAST of mRNA_H-elongata_contig19403.5390.1 vs. uniprot
Match: A0A4D9D5F8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5F8_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 3.670e-11 Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 2
Query: 1442 LFPEAISASLRRLAAAADKEWKIVAWGNTNTQARDFRGALEQAKSTGRPVRFLRWGHELPR-VSLDELSRRNVYRFATTGRYVETAAIETALARVERL 1732
L P+AI S +RL+ + + AWGNTN++ARDF+ A+ A GR VRFLRWG EL + V +EL RNV+R G+YV AI AL R + L
Sbjct: 103 LLPQAIRRSYQRLSRSLCGPGPV-AWGNTNSKARDFKEAILLAGKAGRRVRFLRWGKELGKEVGKEELILRNVWRAYREGKYVPVRAISAALERTKVL 199 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19403.5390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19403.5390.1 >prot_H-elongata_contig19403.5390.1 ID=prot_H-elongata_contig19403.5390.1|Name=mRNA_H-elongata_contig19403.5390.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=759bp MWLRLSLRCITQRQELILLLLLQMLFCWLSAVTAIAMGLVLKDAGSDRRGback to top mRNA from alignment at H-elongata_contig19403:962..5874- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19403.5390.1 ID=mRNA_H-elongata_contig19403.5390.1|Name=mRNA_H-elongata_contig19403.5390.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4913bp|location=Sequence derived from alignment at H-elongata_contig19403:962..5874- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19403:962..5874- >mRNA_H-elongata_contig19403.5390.1 ID=mRNA_H-elongata_contig19403.5390.1|Name=mRNA_H-elongata_contig19403.5390.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4554bp|location=Sequence derived from alignment at H-elongata_contig19403:962..5874- (Himanthalia elongata Himel1 dioecious)back to top |