mRNA_H-elongata_contig19334.5363.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: D8LBD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBD6_ECTSI) HSP 1 Score: 312 bits (800), Expect = 4.760e-103 Identity = 199/220 (90.45%), Postives = 210/220 (95.45%), Query Frame = 1
Query: 133 AHAGTRKKTFKGHTGVVNSCCVSRTGNLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEIGA 792
A+AG RKKTFKGH+GVVNSC +SRTGNL+AS SDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDN+IKVFDVRKLD+AY+M GHTDT XXXXXXXXXXXXXXXXXXXXXXXXXXXPFAN+ R+EKTF G+KHGGEKNLLKCAW XXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNE+ FHP ESIIGSCGSDKNIYLGEIGA
Sbjct: 131 ANAGKRKKTFKGHSGVVNSCSISRTGNLMASASDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNEIKVFDVRKLDIAYTMTGHTDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFHGIKHGGEKNLLKCAWXXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEMTFHPTESIIGSCGSDKNIYLGEIGA 350
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A6H5JPD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD3_9PHAE) HSP 1 Score: 274 bits (700), Expect = 6.930e-90 Identity = 164/209 (78.47%), Postives = 174/209 (83.25%), Query Frame = 1
Query: 190 CCVSRTGNLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVK--------HGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEIGA 792
C +SRTGNL+AS SDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDN+IKVFDVRKLD+AY+M GHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXX PF N+ R+EKTF G+K HGGEKNLLKCAWS DEPSTQELYFLPGHTGSVNE+ FHP ESIIGSCGSDKNIY+GEIGA
Sbjct: 3 CSISRTGNLVASASDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNEIKVFDVRKLDIAYTMTGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVNQNRLEKTFHGIKDVYDPFLQHGGEKNLLKCAWSPDGEMVSAGSSDQAVHIWDEPSTQELYFLPGHTGSVNEMTFHPTESIIGSCGSDKNIYIGEIGA 211
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: S2JES3_MUCC1 (Uncharacterized protein n=6 Tax=Mucoraceae TaxID=34489 RepID=S2JES3_MUCC1) HSP 1 Score: 210 bits (534), Expect = 9.010e-63 Identity = 123/248 (49.60%), Postives = 157/248 (63.31%), Query Frame = 1
Query: 46 SQAILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
+ A++E+HWS +S I +CSADKT+G +D GTR + ++GHTG+VNSC V+R G L+ SGSDD VK+WD R + +V F N+YQVT+VC S + S G+DNDIKV+DVRK LAY+M+GH DTV XXXXXXXXXXXXXXX PFA R K F G HG EKNL+K W+ D + + LY LPGH G VN+V +HP E II S +DK ++LGE+
Sbjct: 109 TNAVMEIHWSRDSNQIFSCSADKTVGIFDVKTGTRSRRWRGHTGIVNSCQVARRGAELVVSGSDDCTVKIWDSRAKEAVNTFENEYQVTSVCFSDAGDMIYSAGLDNDIKVWDVRKNQLAYTMKGHMDTVSGMSLSPDGNNXXXXXXXXXXXXXXXKPFAAADRCLKIFEGAPHGFEKNLIKPCWATDGSQIACGSADRSVVIWDVDTRKILYKLPGHKGCVNDVDWHPKEPIIMSASTDKTLFLGEV 356
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A068SGF1_9FUNG (U5 small nuclear ribonucleoprotein 40 kdaprotein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SGF1_9FUNG) HSP 1 Score: 200 bits (509), Expect = 5.130e-59 Identity = 151/266 (56.77%), Postives = 184/266 (69.17%), Query Frame = 1
Query: 1 LLW--YCVCNRRAGMH-QSQAILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
LLW Y CN + + AILE+HWS + + +CSADKT+ WDA G R + +KGHT VVNSC V+R G + SGSDDG +KLWD R + +V F ++YQVT+VC S V +GG+DN+IKV+D+RK +AY++ GH DT+ XXXXXXXXXXXXXXXXXXXXXXXXXPFA R K G HG EKNL+ WS XXXXXXXXXXXXXXXX+ S + LY LPGH G VN+V +HP E II S +DK I LGE+
Sbjct: 94 LLWNTYGDCNNYGVLRGHANAILEVHWSRDGSQLFSCSADKTVAIWDATTGERVRRWKGHTLVVNSCQVARRGPETVVSGSDDGCIKLWDSRSKDAVQNFQDKYQVTSVCFSDAGDMVYTGGLDNEIKVWDIRKKAVAYTLSGHLDTITGXXXXXXXXXXXXXXXXXXXXXXXXXPFAPADRCTKVLEGAPHGFEKNLITPCWSTDXXXXXXXXXXXXXXXXEANSGKILYKLPGHKGCVNDVDWHPMEPIIMSASTDKTIMLGEV 359
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A0A9B0W5_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9B0W5_ARUDO) HSP 1 Score: 195 bits (496), Expect = 2.110e-58 Identity = 122/246 (49.59%), Postives = 152/246 (61.79%), Query Frame = 1
Query: 52 AILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTGN-LLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
AIL+L W+ + II+ S DKTL WD G + K H+ VNSCC +R L+ SGSDDG KLWD R R ++ +++Q+TAV S +V +GG+DND+K +D+RK ++ ++GH D + XXXXXXXXXXXXXXXXXXXP+A E R KT G +H EKNLLKC+WS D S + LY LPGH GSVNE AFHP E IIGSCGSDK IYLGE+
Sbjct: 9 AILDLQWTTDGTQIISASPDKTLRVWDVETGKQVKKMAEHSSFVNSCCPARKWPPLVVSGSDDGTAKLWDLRQRGAIQTLPDKFQITAVSFSEAADKVFTGGLDNDVKWWDLRKNEVTEYLKGHQDMITGMQLSPDXXXXXXXXXXXXXXXXXXXPYAPENRNIKTLIGHQHNFEKNLLKCSWSPDNRKVTAGSADRMVYIWDTTSRRILYKLPGHNGSVNETAFHPTEPIIGSCGSDKQIYLGEL 254
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A504YCM9_FASGI (U5 small nuclear ribonucleoprotein 40 kDa n=2 Tax=Fasciola TaxID=6191 RepID=A0A504YCM9_FASGI) HSP 1 Score: 197 bits (500), Expect = 1.170e-57 Identity = 123/246 (50.00%), Postives = 149/246 (60.57%), Query Frame = 1
Query: 52 AILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
AIL+L S + I T SADK++G WD + R K F+GH VVNSC ++R G L+ SGSDDG VKLWD R + V F N YQV +V + + + SGGIDN IK +D+RKLD++ + GHTDTV XXXXXXXXXXXXXX PFA R K F G +H EKN+L+CAWS D + Q +Y LPGHT SVNE AFHP E I+ S GSDK I+LGEI
Sbjct: 114 AILDLILSADDAVIYTASADKSVGLWDTNLAKRIKRFRGHQNVVNSCGLARRGPQLVCSGSDDGTVKLWDRRQKTHVQSFQNTYQVLSVTFNDTAEMIFSGGIDNVIKGWDIRKLDVSMLLTGHTDTVTGLSVSPDGSFLXXXXXXXXXXXXXXRPFAPPERCMKVFVGHQHTFEKNMLRCAWSADGRRITCGSGDRYVHVWDVSTRQLVYKLPGHTASVNETAFHPCEPILLSVGSDKKIFLGEI 359
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A6U6E5C0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6E5C0_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.730e-57 Identity = 104/250 (41.60%), Postives = 133/250 (53.20%), Query Frame = 1
Query: 52 AILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-----NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
A+L++ WS +S ++T SADK L +WD G R K F GH GVVN+ V R G L+AS SDD +LWD R R V + + YQVTAV S D + V +GGIDN I +D+R+ + +M+GHTDT+ PFA R KTF G H E+ LL CAWS DE ST+ELY+LPGH G VN V FHP E++I S SDK +Y+GE+
Sbjct: 91 AVLDVAWSHDSERVVTASADKHLAWWDVSRGERVKRFVGHEGVVNAVDVVREGAGSFPGLVASASDDCTARLWDARRRGDVGQLEHGYQVTAVAYSSDGKTVYTGGIDNCIHAWDIRRKERIMTMKGHTDTITCLSLSPKGTHLLSNSSDGTLRTWDIRPFAEGKRHRKTFEGGTHNAERGLLNCAWSADGTMVTGGSADRVVHIWDEYSTEELYYLPGHAGCVNSVVFHPKENVIASGSSDKTLYVGEL 340
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A0C9SDU0_AMBAM (Putative u5 snrnp-specific protein-like factor (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9SDU0_AMBAM) HSP 1 Score: 192 bits (489), Expect = 4.880e-57 Identity = 128/246 (52.03%), Postives = 154/246 (62.60%), Query Frame = 1
Query: 52 AILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
A+L++H+S + + T S DKTLG WD H G R K +GHT VN+C +R G L+ SGSDD +KLWD R R + YQ+TAV + +QV+S GIDN IKV+D+RK + Y M GH DT+ XXXXXXXXXXXXXXXXXXXXXXXXXPFA + R K G H EKNLL+CAWS D S + L LPGH GSVN+V FHP E I+ S SDK +YLGEI
Sbjct: 31 AVLDMHFSTDGSLLFTASTDKTLGVWDTHVGVRIKRLRGHTLYVNACHPARRGPQLICSGSDDSTLKLWDTRKRTPAHSYQESYQITAVSFNDTAEQVLSAGIDNQIKVWDLRKNAVLYKMVGHLDTITGXXXXXXXXXXXXXXXXXXXXXXXXXPFAPQERCVKILQGHMHNFEKNLLRCAWSSDGSKVTAGSADRYVHIWDTTSRRLLCKLPGHNGSVNDVQFHPKEPIVLSVASDKQVYLGEI 276
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A0L0GAR9_9EUKA (U5 small nuclear ribonucleoprotein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAR9_9EUKA) HSP 1 Score: 194 bits (494), Expect = 8.500e-57 Identity = 124/247 (50.20%), Postives = 156/247 (63.16%), Query Frame = 1
Query: 46 SQAILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTGNLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
+ A++++ ++ +++CSADK L W+ G R K +GHT VVNSCC SR G L SGSDDG VKLWD R +++VA N+YQVT VC S D Q++ K ++ Y M GHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXP+ + R+EK F G H EKNLLKC+W D S + LY LPGHTG+VN+V FHP E ++ SC SDK ++LGE+
Sbjct: 113 TNAVMQVDFASGGGELLSCSADKFLALWNVSTGERIKKIRGHTAVVNSCCPSRVGTLACSGSDDGTVKLWDFREKKAVATLSNRYQVTGVCFSADAQRIYXXXXXXXXXXXXXXKNEVEYHMNGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPYKADNRLEKIFTGATHNFEKNLLKCSWDPSGKMVTAGSADRLVCVWDAKSAKMLYRLPGHTGTVNDVKFHPREPVVLSCSSDKKMFLGEL 359
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A183KND3_9TREM (WD_REPEATS_REGION domain-containing protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183KND3_9TREM) HSP 1 Score: 191 bits (485), Expect = 1.080e-56 Identity = 118/246 (47.97%), Postives = 146/246 (59.35%), Query Frame = 1
Query: 52 AILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
AIL+L S + I T S+DK++ WD + R K F+GH +VNSC V+R G + SGSDDG ++LWD R + V F N YQV +V S + + SGGIDN +K +D+RKL+ + + GHTDTV XXXXXXXXXXXXXX PFA R K F G +H EKNLL+CAWS D + Q +Y LPGHT SVNE AFHP E I+ S GSDK I+LGEI
Sbjct: 8 AILDLVLSSDDSVIYTASSDKSIALWDTESAQRIKKFRGHENIVNSCAVARRGPQHVCSGSDDGTIRLWDRRQKACVQTFQNTYQVLSVTFSDTTEMIFSGGIDNVVKGWDLRKLEASMLLNGHTDTVTGLSVSPDGSFLXXXXXXXXXXXXXXRPFAPTDRCTKIFTGHQHTFEKNLLRCAWSADNRRITSGSGDRYVHVWDVNTRQLVYKLPGHTASVNETAFHPTEPILLSVGSDKKIFLGEI 253 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19334.5363.1 >prot_H-elongata_contig19334.5363.1 ID=prot_H-elongata_contig19334.5363.1|Name=mRNA_H-elongata_contig19334.5363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp LLWYCVCNRRAGMHQSQAILELHWSPNSPTIITCSADKTLGYWDAHAGTRback to top mRNA from alignment at H-elongata_contig19334:2803..5252- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19334.5363.1 ID=mRNA_H-elongata_contig19334.5363.1|Name=mRNA_H-elongata_contig19334.5363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2450bp|location=Sequence derived from alignment at H-elongata_contig19334:2803..5252- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19334:2803..5252- >mRNA_H-elongata_contig19334.5363.1 ID=mRNA_H-elongata_contig19334.5363.1|Name=mRNA_H-elongata_contig19334.5363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig19334:2803..5252- (Himanthalia elongata Himel1 dioecious)back to top |