mRNA_H-elongata_contig19334.5363.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19334.5363.1
Unique NamemRNA_H-elongata_contig19334.5363.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: D8LBD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBD6_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 4.760e-103
Identity = 199/220 (90.45%), Postives = 210/220 (95.45%), Query Frame = 1
Query:  133 AHAGTRKKTFKGHTGVVNSCCVSRTGNLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEIGA 792
            A+AG RKKTFKGH+GVVNSC +SRTGNL+AS SDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDN+IKVFDVRKLD+AY+M GHTDT XXXXXXXXXXXXXXXXXXXXXXXXXXXPFAN+ R+EKTF G+KHGGEKNLLKCAW XXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNE+ FHP ESIIGSCGSDKNIYLGEIGA
Sbjct:  131 ANAGKRKKTFKGHSGVVNSCSISRTGNLMASASDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNEIKVFDVRKLDIAYTMTGHTDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFHGIKHGGEKNLLKCAWXXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEMTFHPTESIIGSCGSDKNIYLGEIGA 350          
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A6H5JPD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD3_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 6.930e-90
Identity = 164/209 (78.47%), Postives = 174/209 (83.25%), Query Frame = 1
Query:  190 CCVSRTGNLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVK--------HGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEIGA 792
            C +SRTGNL+AS SDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDN+IKVFDVRKLD+AY+M GHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXX PF N+ R+EKTF G+K        HGGEKNLLKCAWS                  DEPSTQELYFLPGHTGSVNE+ FHP ESIIGSCGSDKNIY+GEIGA
Sbjct:    3 CSISRTGNLVASASDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNEIKVFDVRKLDIAYTMTGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVNQNRLEKTFHGIKDVYDPFLQHGGEKNLLKCAWSPDGEMVSAGSSDQAVHIWDEPSTQELYFLPGHTGSVNEMTFHPTESIIGSCGSDKNIYIGEIGA 211          
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: S2JES3_MUCC1 (Uncharacterized protein n=6 Tax=Mucoraceae TaxID=34489 RepID=S2JES3_MUCC1)

HSP 1 Score: 210 bits (534), Expect = 9.010e-63
Identity = 123/248 (49.60%), Postives = 157/248 (63.31%), Query Frame = 1
Query:   46 SQAILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
            + A++E+HWS +S  I +CSADKT+G +D   GTR + ++GHTG+VNSC V+R G  L+ SGSDD  VK+WD R + +V  F N+YQVT+VC S     + S G+DNDIKV+DVRK  LAY+M+GH DTV           XXXXXXXXXXXXXXX PFA   R  K F G  HG EKNL+K  W+                  D  + + LY LPGH G VN+V +HP E II S  +DK ++LGE+
Sbjct:  109 TNAVMEIHWSRDSNQIFSCSADKTVGIFDVKTGTRSRRWRGHTGIVNSCQVARRGAELVVSGSDDCTVKIWDSRAKEAVNTFENEYQVTSVCFSDAGDMIYSAGLDNDIKVWDVRKNQLAYTMKGHMDTVSGMSLSPDGNNXXXXXXXXXXXXXXXKPFAAADRCLKIFEGAPHGFEKNLIKPCWATDGSQIACGSADRSVVIWDVDTRKILYKLPGHKGCVNDVDWHPKEPIIMSASTDKTLFLGEV 356          
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A068SGF1_9FUNG (U5 small nuclear ribonucleoprotein 40 kdaprotein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SGF1_9FUNG)

HSP 1 Score: 200 bits (509), Expect = 5.130e-59
Identity = 151/266 (56.77%), Postives = 184/266 (69.17%), Query Frame = 1
Query:    1 LLW--YCVCNRRAGMH-QSQAILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
            LLW  Y  CN    +   + AILE+HWS +   + +CSADKT+  WDA  G R + +KGHT VVNSC V+R G   + SGSDDG +KLWD R + +V  F ++YQVT+VC S     V +GG+DN+IKV+D+RK  +AY++ GH DT+  XXXXXXXXXXXXXXXXXXXXXXXXXPFA   R  K   G  HG EKNL+   WS  XXXXXXXXXXXXXXXX+  S + LY LPGH G VN+V +HP E II S  +DK I LGE+
Sbjct:   94 LLWNTYGDCNNYGVLRGHANAILEVHWSRDGSQLFSCSADKTVAIWDATTGERVRRWKGHTLVVNSCQVARRGPETVVSGSDDGCIKLWDSRSKDAVQNFQDKYQVTSVCFSDAGDMVYTGGLDNEIKVWDIRKKAVAYTLSGHLDTITGXXXXXXXXXXXXXXXXXXXXXXXXXPFAPADRCTKVLEGAPHGFEKNLITPCWSTDXXXXXXXXXXXXXXXXEANSGKILYKLPGHKGCVNDVDWHPMEPIIMSASTDKTIMLGEV 359          
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A0A9B0W5_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9B0W5_ARUDO)

HSP 1 Score: 195 bits (496), Expect = 2.110e-58
Identity = 122/246 (49.59%), Postives = 152/246 (61.79%), Query Frame = 1
Query:   52 AILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTGN-LLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
            AIL+L W+ +   II+ S DKTL  WD   G + K    H+  VNSCC +R    L+ SGSDDG  KLWD R R ++    +++Q+TAV  S    +V +GG+DND+K +D+RK ++   ++GH D +        XXXXXXXXXXXXXXXXXXXP+A E R  KT  G +H  EKNLLKC+WS                  D  S + LY LPGH GSVNE AFHP E IIGSCGSDK IYLGE+
Sbjct:    9 AILDLQWTTDGTQIISASPDKTLRVWDVETGKQVKKMAEHSSFVNSCCPARKWPPLVVSGSDDGTAKLWDLRQRGAIQTLPDKFQITAVSFSEAADKVFTGGLDNDVKWWDLRKNEVTEYLKGHQDMITGMQLSPDXXXXXXXXXXXXXXXXXXXPYAPENRNIKTLIGHQHNFEKNLLKCSWSPDNRKVTAGSADRMVYIWDTTSRRILYKLPGHNGSVNETAFHPTEPIIGSCGSDKQIYLGEL 254          
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A504YCM9_FASGI (U5 small nuclear ribonucleoprotein 40 kDa n=2 Tax=Fasciola TaxID=6191 RepID=A0A504YCM9_FASGI)

HSP 1 Score: 197 bits (500), Expect = 1.170e-57
Identity = 123/246 (50.00%), Postives = 149/246 (60.57%), Query Frame = 1
Query:   52 AILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
            AIL+L  S +   I T SADK++G WD +   R K F+GH  VVNSC ++R G  L+ SGSDDG VKLWD R +  V  F N YQV +V  +   + + SGGIDN IK +D+RKLD++  + GHTDTV            XXXXXXXXXXXXXX PFA   R  K F G +H  EKN+L+CAWS                  D  + Q +Y LPGHT SVNE AFHP E I+ S GSDK I+LGEI
Sbjct:  114 AILDLILSADDAVIYTASADKSVGLWDTNLAKRIKRFRGHQNVVNSCGLARRGPQLVCSGSDDGTVKLWDRRQKTHVQSFQNTYQVLSVTFNDTAEMIFSGGIDNVIKGWDIRKLDVSMLLTGHTDTVTGLSVSPDGSFLXXXXXXXXXXXXXXRPFAPPERCMKVFVGHQHTFEKNMLRCAWSADGRRITCGSGDRYVHVWDVSTRQLVYKLPGHTASVNETAFHPCEPILLSVGSDKKIFLGEI 359          
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A6U6E5C0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6E5C0_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.730e-57
Identity = 104/250 (41.60%), Postives = 133/250 (53.20%), Query Frame = 1
Query:   52 AILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-----NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
            A+L++ WS +S  ++T SADK L +WD   G R K F GH GVVN+  V R G      L+AS SDD   +LWD R R  V +  + YQVTAV  S D + V +GGIDN I  +D+R+ +   +M+GHTDT+                           PFA   R  KTF G  H  E+ LL CAWS                  DE ST+ELY+LPGH G VN V FHP E++I S  SDK +Y+GE+
Sbjct:   91 AVLDVAWSHDSERVVTASADKHLAWWDVSRGERVKRFVGHEGVVNAVDVVREGAGSFPGLVASASDDCTARLWDARRRGDVGQLEHGYQVTAVAYSSDGKTVYTGGIDNCIHAWDIRRKERIMTMKGHTDTITCLSLSPKGTHLLSNSSDGTLRTWDIRPFAEGKRHRKTFEGGTHNAERGLLNCAWSADGTMVTGGSADRVVHIWDEYSTEELYYLPGHAGCVNSVVFHPKENVIASGSSDKTLYVGEL 340          
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A0C9SDU0_AMBAM (Putative u5 snrnp-specific protein-like factor (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9SDU0_AMBAM)

HSP 1 Score: 192 bits (489), Expect = 4.880e-57
Identity = 128/246 (52.03%), Postives = 154/246 (62.60%), Query Frame = 1
Query:   52 AILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
            A+L++H+S +   + T S DKTLG WD H G R K  +GHT  VN+C  +R G  L+ SGSDD  +KLWD R R     +   YQ+TAV  +   +QV+S GIDN IKV+D+RK  + Y M GH DT+  XXXXXXXXXXXXXXXXXXXXXXXXXPFA + R  K   G  H  EKNLL+CAWS                  D  S + L  LPGH GSVN+V FHP E I+ S  SDK +YLGEI
Sbjct:   31 AVLDMHFSTDGSLLFTASTDKTLGVWDTHVGVRIKRLRGHTLYVNACHPARRGPQLICSGSDDSTLKLWDTRKRTPAHSYQESYQITAVSFNDTAEQVLSAGIDNQIKVWDLRKNAVLYKMVGHLDTITGXXXXXXXXXXXXXXXXXXXXXXXXXPFAPQERCVKILQGHMHNFEKNLLRCAWSSDGSKVTAGSADRYVHIWDTTSRRLLCKLPGHNGSVNDVQFHPKEPIVLSVASDKQVYLGEI 276          
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A0L0GAR9_9EUKA (U5 small nuclear ribonucleoprotein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAR9_9EUKA)

HSP 1 Score: 194 bits (494), Expect = 8.500e-57
Identity = 124/247 (50.20%), Postives = 156/247 (63.16%), Query Frame = 1
Query:   46 SQAILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTGNLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
            + A++++ ++     +++CSADK L  W+   G R K  +GHT VVNSCC SR G L  SGSDDG VKLWD R +++VA   N+YQVT VC S D Q++               K ++ Y M GHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXP+  + R+EK F G  H  EKNLLKC+W                   D  S + LY LPGHTG+VN+V FHP E ++ SC SDK ++LGE+
Sbjct:  113 TNAVMQVDFASGGGELLSCSADKFLALWNVSTGERIKKIRGHTAVVNSCCPSRVGTLACSGSDDGTVKLWDFREKKAVATLSNRYQVTGVCFSADAQRIYXXXXXXXXXXXXXXKNEVEYHMNGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPYKADNRLEKIFTGATHNFEKNLLKCSWDPSGKMVTAGSADRLVCVWDAKSAKMLYRLPGHTGTVNDVKFHPREPVVLSCSSDKKMFLGEL 359          
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Match: A0A183KND3_9TREM (WD_REPEATS_REGION domain-containing protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183KND3_9TREM)

HSP 1 Score: 191 bits (485), Expect = 1.080e-56
Identity = 118/246 (47.97%), Postives = 146/246 (59.35%), Query Frame = 1
Query:   52 AILELHWSPNSPTIITCSADKTLGYWDAHAGTRKKTFKGHTGVVNSCCVSRTG-NLLASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANEIRMEKTFFGVKHGGEKNLLKCAWSXXXXXXXXXXXXXXXXXXDEPSTQELYFLPGHTGSVNEVAFHPNESIIGSCGSDKNIYLGEI 786
            AIL+L  S +   I T S+DK++  WD  +  R K F+GH  +VNSC V+R G   + SGSDDG ++LWD R +  V  F N YQV +V  S   + + SGGIDN +K +D+RKL+ +  + GHTDTV            XXXXXXXXXXXXXX PFA   R  K F G +H  EKNLL+CAWS                  D  + Q +Y LPGHT SVNE AFHP E I+ S GSDK I+LGEI
Sbjct:    8 AILDLVLSSDDSVIYTASSDKSIALWDTESAQRIKKFRGHENIVNSCAVARRGPQHVCSGSDDGTIRLWDRRQKACVQTFQNTYQVLSVTFSDTTEMIFSGGIDNVVKGWDLRKLEASMLLNGHTDTVTGLSVSPDGSFLXXXXXXXXXXXXXXRPFAPTDRCTKIFTGHQHTFEKNLLRCAWSADNRRITSGSGDRYVHVWDVNTRQLVYKLPGHTASVNETAFHPTEPILLSVGSDKKIFLGEI 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19334.5363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBD6_ECTSI4.760e-10390.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPD3_9PHAE6.930e-9078.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
S2JES3_MUCC19.010e-6349.60Uncharacterized protein n=6 Tax=Mucoraceae TaxID=3... [more]
A0A068SGF1_9FUNG5.130e-5956.77U5 small nuclear ribonucleoprotein 40 kdaprotein n... [more]
A0A0A9B0W5_ARUDO2.110e-5849.59Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A504YCM9_FASGI1.170e-5750.00U5 small nuclear ribonucleoprotein 40 kDa n=2 Tax=... [more]
A0A6U6E5C0_9STRA3.730e-5741.60Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A0C9SDU0_AMBAM4.880e-5752.03Putative u5 snrnp-specific protein-like factor (Fr... [more]
A0A0L0GAR9_9EUKA8.500e-5750.20U5 small nuclear ribonucleoprotein n=1 Tax=Sphaero... [more]
A0A183KND3_9TREM1.080e-5647.97WD_REPEATS_REGION domain-containing protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19334contigH-elongata_contig19334:2803..5252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score311.6
Seed ortholog evalue3.5e-82
Seed eggNOG ortholog2880.D8LBD6
Preferred nameSNRNP40
KEGG rclassRC00004,RC00740
KEGG koko:K01759,ko:K12857
KEGG ReactionR02530
KEGG Pathwayko00620,ko03040,map00620,map03040
KEGG ModuleM00354,M00355
GOsGO:0000003,GO:0000122,GO:0000375,GO:0000377,GO:0000398,GO:0000429,GO:0000430,GO:0000433,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007154,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008152,GO:0008289,GO:0008380,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016584,GO:0016604,GO:0016607,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019899,GO:0022414,GO:0022607,GO:0030154,GO:0030532,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0034641,GO:0034728,GO:0035091,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0040008,GO:0042221,GO:0042304,GO:0042393,GO:0042826,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045292,GO:0045892,GO:0045893,GO:0045894,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046483,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071007,GO:0071011,GO:0071013,GO:0071014,GO:0071103,GO:0071496,GO:0071704,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140110,GO:1900428,GO:1901360,GO:1901363,GO:1901981,GO:1902494,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:1990904,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0265@1,KOG0265@2759
EC4.4.1.5
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-27_004330.1
Exons5
Model size795
Cds size795
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19334.5363.1prot_H-elongata_contig19334.5363.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19334 2803..5252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930101.817264-CDS-H-elongata_contig19334:2802..28831622930101.817264-CDS-H-elongata_contig19334:2802..2883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19334 2803..2883 -
1691679280.6110404-CDS-H-elongata_contig19334:2802..28831691679280.6110404-CDS-H-elongata_contig19334:2802..2883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19334 2803..2883 -
1622930101.852973-CDS-H-elongata_contig19334:3255..34081622930101.852973-CDS-H-elongata_contig19334:3255..3408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19334 3256..3408 -
1691679280.6239014-CDS-H-elongata_contig19334:3255..34081691679280.6239014-CDS-H-elongata_contig19334:3255..3408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19334 3256..3408 -
1622930101.8700008-CDS-H-elongata_contig19334:3771..38961622930101.8700008-CDS-H-elongata_contig19334:3771..3896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19334 3772..3896 -
1691679280.6341445-CDS-H-elongata_contig19334:3771..38961691679280.6341445-CDS-H-elongata_contig19334:3771..3896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19334 3772..3896 -
1622930101.885546-CDS-H-elongata_contig19334:4352..46231622930101.885546-CDS-H-elongata_contig19334:4352..4623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19334 4353..4623 -
1691679280.6436079-CDS-H-elongata_contig19334:4352..46231691679280.6436079-CDS-H-elongata_contig19334:4352..4623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19334 4353..4623 -
1622930101.903517-CDS-H-elongata_contig19334:5087..52521622930101.903517-CDS-H-elongata_contig19334:5087..5252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19334 5088..5252 -
1691679280.6536977-CDS-H-elongata_contig19334:5087..52521691679280.6536977-CDS-H-elongata_contig19334:5087..5252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19334 5088..5252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19334.5363.1

>prot_H-elongata_contig19334.5363.1 ID=prot_H-elongata_contig19334.5363.1|Name=mRNA_H-elongata_contig19334.5363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
LLWYCVCNRRAGMHQSQAILELHWSPNSPTIITCSADKTLGYWDAHAGTR
KKTFKGHTGVVNSCCVSRTGNLLASGSDDGFVKLWDPRVRRSVAEFMNQY
QVTAVCLSRDDQQVMSGGIDNDIKVFDVRKLDLAYSMEGHTDTVTGLSLS
PDGNHLLSNSMDNSVIMWDVRPFANEIRMEKTFFGVKHGGEKNLLKCAWS
PDGEMVSAGSFDQAVHIWDEPSTQELYFLPGHTGSVNEVAFHPNESIIGS
CGSDKNIYLGEIGA*
back to top

mRNA from alignment at H-elongata_contig19334:2803..5252-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19334.5363.1 ID=mRNA_H-elongata_contig19334.5363.1|Name=mRNA_H-elongata_contig19334.5363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2450bp|location=Sequence derived from alignment at H-elongata_contig19334:2803..5252- (Himanthalia elongata Himel1 dioecious)
TTACTGTGGTATTGTGTTTGTAACCGTCGCGCGGGAATGCACCAATCGCA GGCAATCCTCGAGTTACACTGGTCACCCAACAGCCCCACGATCATCACTT GCTCGGCGGACAAAACCTTGGGATACTGGGATGCCCACGCGGGCACTCGC AAAAAAACGTTCAAGGTACGTGGTGATTGATGACTCGCGTTAGGCTCACG GCACCCCCTTCACCCCATTGGTGTGATCTCGATACTGTACTGGAATTAAT GCTGAAAAGTTCCTAGCATAACGTAGATTGTGGTATAGATAGATCATGGC ATGAGCTTGATTATGGTATAAATCGTGGCATGAGCTTGATTATGGTACAA GTCATGGCACGCACAGCATTGATGGTGACACATATTATTGCATAGATTAT GGCATAAATTATGGTATAGATAATGGCATGGCGTTGATTGTGGCATATAT CATGACATGGCGTTGATTGTGGTATAGATCATGACATGGCGTTGATTGTG GCATATATCATGACATGGTGTAGAGTATAGTATAGATTTTGGTATAGATA ATGGCACGGCGTTGATTATGGTGCAGATCGTGGCGTAAGGCTGTTTTTTT CCTACTCCTTTGCGAGGCATTCTGTACAGGGGCACACTGGAGTTGTGAAC AGCTGTTGCGTGTCTCGCACCGGGAACCTCCTAGCATCCGGCTCCGACGA TGGTTTTGTTAAGCTGTGGGATCCAAGAGTTCGGCGATCGGTGGCGGAGT TTATGAATCAGTATCAGGTTACGGCAGTATGCTTGTCCAGAGACGATCAG CAGGTGATGAGTGGCGGCATCGATAACGACATCAAGGTCTTCGATGTGCG GAAGCTCGACCTCGCCTACTCCATGGAGGGCCACACAGACACCGTCACAG GTGCGTTGTTGGGCGGCTGGGCTGGGCCGGGCCGAAGAACCCTCTAGGAG AACCCTCTACCCTACCTGGTACTGTTTGTGTCCGTTGTCATCCCATTTAA TGTAGTATCGTAGACGTCAGACAGACTTACTACTTGTGGACGCCCCAGTC GAGGTATCACAGGAGGAAGGTTACACAGGATTCTTCCACCTTCCTTCTGC GGTGCTTGTCTTAAAAAAAAAAATTATCGCGAGAAGGTTCAGCATTCTAT TTCCGTCGTCGACCGTCAAGTCGAATTTCGTTTATCCACGAAACAGTCGT TCTCCACTTGTTGGACATGATGTCACAAAATATATCAGGCCGTGTAAATG CGCCGAGATTCGAACTCACGCCCCAACGTCAGAAGGTTTCGAGGTTACCA ACTGGACCACTGTACACAAAGTATGCGTTGTTGATGTGGTCCATCTCTCG TTGCAGGATTGTCGCTGAGCCCCGACGGGAACCACCTCTTATCGAATTCC ATGGATAACAGCGTGATCATGTGGGACGTGCGCCCATTCGCGAACGAGAT TCGAATGGAGAAGACCTTTTTTGGTGTGAAGGTGACTGTGGTGTGTTCTG ACCGCGCGGTTTTGACGCTCAAGTTTGGCTCGAAACGAAATGCCTCCTTG TGCGAATGACTCTTCGATTTGATTAAATTTGATTCGATTCGTTGCCATAG GACTGATAGGACTGATCTATCGAATGACTCTATCGACTGTCGATGGAAAA GAATGACGGAACACAGCTACAAGCACAGCTACAGCGGCTGGAAAGTGAAA GACTCCCAGGAAGCCCGAGTATTTTCCCTTAATATCAATTTGCATAAGAC CCGCATCGGTTTGCAAATAACCCCTCTACCCCACCCCCCTCGATGGGGAC CTATGTCTACGTCTCCCATTTGTGCTATGCCTATCATATCTCAGCACGGA GGTGAGAAGAACTTGCTGAAGTGTGCGTGGTCGCCAGACGGGGAGATGGT TTCCGCAGGGTCTTTTGATCAAGCTGTACACATCTGGGACGAACCGTCAA CTCAGGAGCTGTATTTCTTGCCGGGCCATACGGGATCGGTCAATGAGGTG AGGGTCGCCTTGTGGCTCATCTATCGTGGACCGTTTTTTTATTTAGGGTG TGAGCGTGACCGCGTGGGATTGTCACTGGAGATATTTTGCATAGCATCGA GATCTGAAACGAAGGTACCTTTGTCGAGTTGTTTTGCCTATATTTTCCCA GCAGTGTGTGGTCCATCACATAAAGCAGTCTAAGGTGTATAGTCATATGA TATATAGAGATGATTGATGATTCGAGAGATGTTTCGGCGGACGTCACAGG GATTGTTCGAATGGACCTATTAACTAAGGGGTTTTGCAACAGTTTGCGTG GCGTATCAGAGTTTGCGACGCCCGGTTATCGTCTCAACTCCCCCCCTCCT CCCCTCGCCTGACCTGCAGGTGGCATTTCACCCCAACGAGAGCATAATCG GCTCGTGCGGCTCTGACAAGAACATCTACTTGGGCGAGATTGGTGCATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19334:2803..5252-

>mRNA_H-elongata_contig19334.5363.1 ID=mRNA_H-elongata_contig19334.5363.1|Name=mRNA_H-elongata_contig19334.5363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig19334:2803..5252- (Himanthalia elongata Himel1 dioecious)
TTACTGTGGTATTGTGTTTGTAACCGTCGCGCGGGAATGCACCAATCGCA
GGCAATCCTCGAGTTACACTGGTCACCCAACAGCCCCACGATCATCACTT
GCTCGGCGGACAAAACCTTGGGATACTGGGATGCCCACGCGGGCACTCGC
AAAAAAACGTTCAAGTTACTGTGGTATTGTGTTTGTAACCGTCGCGCGGG
AATGCACCAATCGCAGGCAATCCTCGAGTTACACTGGTCACCCAACAGCC
CCACGATCATCACTTGCTCGGCGGACAAAACCTTGGGATACTGGGATGCC
CACGCGGGCACTCGCAAAAAAACGTTCAAGGGGCACACTGGAGTTGTGAA
CAGCTGTTGCGTGTCTCGCACCGGGAACCTCCTAGCATCCGGCTCCGACG
ATGGTTTTGTTAAGCTGTGGGATCCAAGAGTTCGGCGATCGGTGGCGGAG
TTTATGAATCAGTATCAGGTTACGGCAGTATGCTTGTCCAGAGACGATCA
GCAGGTGATGAGTGGCGGCATCGATAACGACATCAAGGTCTTCGATGTGC
GGAAGCTCGACCTCGCCTACTCCATGGAGGGCCACACAGACACCGTCACA
GGGGCACACTGGAGTTGTGAACAGCTGTTGCGTGTCTCGCACCGGGAACC
TCCTAGCATCCGGCTCCGACGATGGTTTTGTTAAGCTGTGGGATCCAAGA
GTTCGGCGATCGGTGGCGGAGTTTATGAATCAGTATCAGGTTACGGCAGT
ATGCTTGTCCAGAGACGATCAGCAGGTGATGAGTGGCGGCATCGATAACG
ACATCAAGGTCTTCGATGTGCGGAAGCTCGACCTCGCCTACTCCATGGAG
GGCCACACAGACACCGTCACAGGATTGTCGCTGAGCCCCGACGGGAACCA
CCTCTTATCGAATTCCATGGATAACAGCGTGATCATGTGGGACGTGCGCC
CATTCGCGAACGAGATTCGAATGGAGAAGACCTTTTTTGGTGTGAAGGAT
TGTCGCTGAGCCCCGACGGGAACCACCTCTTATCGAATTCCATGGATAAC
AGCGTGATCATGTGGGACGTGCGCCCATTCGCGAACGAGATTCGAATGGA
GAAGACCTTTTTTGGTGTGAAGCACGGAGGTGAGAAGAACTTGCTGAAGT
GTGCGTGGTCGCCAGACGGGGAGATGGTTTCCGCAGGGTCTTTTGATCAA
GCTGTACACATCTGGGACGAACCGTCAACTCAGGAGCTGTATTTCTTGCC
GGGCCATACGGGATCGGTCAATGAGCACGGAGGTGAGAAGAACTTGCTGA
AGTGTGCGTGGTCGCCAGACGGGGAGATGGTTTCCGCAGGGTCTTTTGAT
CAAGCTGTACACATCTGGGACGAACCGTCAACTCAGGAGCTGTATTTCTT
GCCGGGCCATACGGGATCGGTCAATGAGGTGGCATTTCACCCCAACGAGA
GCATAATCGGCTCGTGCGGCTCTGACAAGAACATCTACTTGGGCGAGATT
GGTGCATGAGTGGCATTTCACCCCAACGAGAGCATAATCGGCTCGTGCGG
CTCTGACAAGAACATCTACTTGGGCGAGATTGGTGCATGA
back to top