mRNA_H-elongata_contig192462.5325.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig192462.5325.1
Unique NamemRNA_H-elongata_contig192462.5325.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig192462.5325.1 vs. uniprot
Match: A0A812S5M3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812S5M3_9DINO)

HSP 1 Score: 47.8 bits (112), Expect = 1.440e-5
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    4 TDYLKVVAYNSVVTACGRAKEWRRGVNVLGQMASVGVIPDCVTFNAAIDACAR 162
            T +L  +  +S VT+C RA +W+  + +L  M    V+PD +T NAAI ACA+
Sbjct:    5 TLWLNQIICSSAVTSCERAAKWQEALQLLHHMYHTEVLPDAITLNAAISACAK 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig192462.5325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A812S5M3_9DINO1.440e-541.51Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig192462contigH-elongata_contig192462:1..231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930097.7323334-CDS-H-elongata_contig192462:0..2311622930097.7323334-CDS-H-elongata_contig192462:0..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192462 1..231 -
1691679278.9579513-CDS-H-elongata_contig192462:0..2311691679278.9579513-CDS-H-elongata_contig192462:0..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig192462 1..231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig192462.5325.1prot_H-elongata_contig192462.5325.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig192462 1..231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig192462.5325.1

>prot_H-elongata_contig192462.5325.1 ID=prot_H-elongata_contig192462.5325.1|Name=mRNA_H-elongata_contig192462.5325.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
ITDYLKVVAYNSVVTACGRAKEWRRGVNVLGQMASVGVIPDCVTFNAAID
ACARVRTATTGAFKKNPSRSFRVFQDR
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mRNA from alignment at H-elongata_contig192462:1..231-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig192462.5325.1 ID=mRNA_H-elongata_contig192462.5325.1|Name=mRNA_H-elongata_contig192462.5325.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig192462:1..231- (Himanthalia elongata Himel1 dioecious)
ATAACTGATTATTTGAAGGTGGTGGCCTATAACTCCGTGGTGACCGCCTG
CGGGAGGGCAAAGGAGTGGCGCCGGGGAGTGAACGTGCTCGGGCAGATGG
CCTCGGTGGGCGTCATCCCGGACTGCGTCACGTTCAACGCCGCCATAGAT
GCGTGCGCGCGGGTGCGGACGGCTACGACAGGCGCATTTAAAAAAAATCC
CTCACGTAGTTTTCGTGTATTTCAGGACAGA
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Coding sequence (CDS) from alignment at H-elongata_contig192462:1..231-

>mRNA_H-elongata_contig192462.5325.1 ID=mRNA_H-elongata_contig192462.5325.1|Name=mRNA_H-elongata_contig192462.5325.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig192462:1..231- (Himanthalia elongata Himel1 dioecious)
ATAACTGATTATTTGAAGGTGGTGGCCTATAACTCCGTGGTGACCGCCTG
CGGGAGGGCAAAGGAGTGGCGCCGGGGAGTGAACGTGCTCGGGCAGATGG
CCTCGGTGGGCGTCATCCCGGACTGCGTCACGTTCAACGCCGCCATAGAT
GCGTGCGCGCGGGTGCGGACGGCTACGACAGGCGCATTTAAAAAAAATCC
CTCACGTAGTTTTCGTGTATTTCAGGACAGAATAACTGATTATTTGAAGG
TGGTGGCCTATAACTCCGTGGTGACCGCCTGCGGGAGGGCAAAGGAGTGG
CGCCGGGGAGTGAACGTGCTCGGGCAGATGGCCTCGGTGGGCGTCATCCC
GGACTGCGTCACGTTCAACGCCGCCATAGATGCGTGCGCGCGGGTGCGGA
CGGCTACGACAGGCGCATTTAAAAAAAATCCCTCACGTAGTTTTCGTGTA
TTTCAGGACAGA
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