prot_H-elongata_contig192462.5325.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig192462.5325.1
Unique Nameprot_H-elongata_contig192462.5325.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length77
Homology
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BLAST of mRNA_H-elongata_contig192462.5325.1 vs. uniprot
Match: A0A812S5M3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812S5M3_9DINO)

HSP 1 Score: 47.8 bits (112), Expect = 1.440e-5
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:    2 TDYLKVVAYNSVVTACGRAKEWRRGVNVLGQMASVGVIPDCVTFNAAIDACAR 54
            T +L  +  +S VT+C RA +W+  + +L  M    V+PD +T NAAI ACA+
Sbjct:    5 TLWLNQIICSSAVTSCERAAKWQEALQLLHHMYHTEVLPDAITLNAAISACAK 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig192462.5325.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A812S5M3_9DINO1.440e-541.51Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 4..76
e-value: 4.0E-12
score: 48.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 8..42
e-value: 2.2E-6
score: 25.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 7..54
e-value: 5.0E-8
score: 33.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 6..40
score: 9.876

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig192462contigH-elongata_contig192462:1..231 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig192462.5325.1mRNA_H-elongata_contig192462.5325.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig192462 1..231 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig192462.5325.1 ID=prot_H-elongata_contig192462.5325.1|Name=mRNA_H-elongata_contig192462.5325.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
ITDYLKVVAYNSVVTACGRAKEWRRGVNVLGQMASVGVIPDCVTFNAAID
ACARVRTATTGAFKKNPSRSFRVFQDR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat