mRNA_H-elongata_contig191719.5304.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: D8LIA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA3_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 1.580e-21 Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1
Query: 19 ISFLQAMGPPYGVVGPESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
++ ++AMGPPYGVVGPESLN +ILVHDFTHRLHMDIF+ QYYP SLTDW
Sbjct: 162 VNAIEAMGPPYGVVGPESLNKNILVHDFTHRLHMDIFDQQYYPPSLTDW 210
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A6H5JY15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY15_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 9.930e-21 Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1
Query: 19 ISFLQAMGPPYGVVGPESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
++ L+AMGPPYGVVGPESLN++ILVHDFTHRLHMDIF QYYP SLTDW
Sbjct: 347 VNALEAMGPPYGVVGPESLNNNILVHDFTHRLHMDIFGQQYYPPSLTDW 395
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A7S3Y7G8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7G8_HETAK) HSP 1 Score: 70.1 bits (170), Expect = 9.820e-13 Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 1 PISVRSISFLQAMGPPYGVVGPE--SLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
P + LQAMGPPYGVVGP ++ IL HDFTHR HM+IF YYP L+DW
Sbjct: 221 PFAALMSRALQAMGPPYGVVGPRCHGQSTRILTHDFTHRTHMEIFNQFYYPPQLSDW 277
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: W7T9N6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9N6_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 3.170e-12 Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 19 ISFLQAMGPPYGVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
I L+ GPPYGVVGP + N+ IL HDFTHR+HM+IF+ YYP L+DW
Sbjct: 216 IQVLEEFGPPYGVVGPLCKHGNTAILTHDFTHRMHMEIFDRLYYPEELSDW 266
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A812R5F6_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812R5F6_SYMMI) HSP 1 Score: 68.2 bits (165), Expect = 3.880e-12 Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 19 ISFLQAMGPPYGVVGPESLNS--HILVHDFTHRLHMDIFEGQYYPASLTDW 165
+ L M PP+GVVGP SL S IL HDF HR+HM+IFE YYP LTDW
Sbjct: 172 VKALLEMRPPFGVVGPSSLGSVDAILTHDFVHRVHMEIFEQDYYPPELTDW 222
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A482STA7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STA7_9ARCH) HSP 1 Score: 67.8 bits (164), Expect = 6.000e-12 Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 28 LQAMGPPYGVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
L+++G PYGVVGP N IL HDF HR+HMD+FE YYP LTDW
Sbjct: 191 LESLGSPYGVVGPLCNQGNDKILTHDFVHRVHMDVFEMNYYPPELTDW 238
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A7S2B2S3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2S3_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.720e-9 Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 1 PISVRSISFLQAMGPP-YGVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
P + R ++ L +GPP G VGP + N IL HDFTHR HM+IF G YYP L DW
Sbjct: 162 PWAHRFVTKLANLGPPNIGAVGPLCQQGNQKILTHDFTHRTHMEIFGGWYYPQELVDW 219
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A7S3WIS4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WIS4_9SPIT) HSP 1 Score: 59.7 bits (143), Expect = 4.850e-9 Identity = 29/49 (59.18%), Postives = 31/49 (63.27%), Query Frame = 1
Query: 28 LQAMGPP-YGVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
L + PP GVVGP + NS IL HD THR HMDIF G YYP TDW
Sbjct: 221 LASYSPPNVGVVGPICDEGNSRILTHDLTHRTHMDIFNGMYYPPVFTDW 269
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: F0YNX4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNX4_AURAN) HSP 1 Score: 58.2 bits (139), Expect = 1.840e-8 Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 1
Query: 52 GVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
G VGP + N IL HDFTHR HMDIFEG YYP L+DW
Sbjct: 418 GAVGPMCKQGNRKILTHDFTHRKHMDIFEGTYYPPELSDW 457
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: F0YNU3_AURAN (Nudix hydrolase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNU3_AURAN) HSP 1 Score: 58.2 bits (139), Expect = 1.850e-8 Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 19 ISFLQAMGPPYGVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
++ L +MG G VGP N+ IL HDFTHR HMDIF+G YYP L+DW
Sbjct: 584 VNALASMGN-VGAVGPLCRQGNTAILTHDFTHRTHMDIFDGAYYPPELSDW 633 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig191719.5304.1 >prot_H-elongata_contig191719.5304.1 ID=prot_H-elongata_contig191719.5304.1|Name=mRNA_H-elongata_contig191719.5304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp PISVRSISFLQAMGPPYGVVGPESLNSHILVHDFTHRLHMDIFEGQYYPAback to top mRNA from alignment at H-elongata_contig191719:888..1055- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig191719.5304.1 ID=mRNA_H-elongata_contig191719.5304.1|Name=mRNA_H-elongata_contig191719.5304.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig191719:888..1055- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig191719:888..1055- >mRNA_H-elongata_contig191719.5304.1 ID=mRNA_H-elongata_contig191719.5304.1|Name=mRNA_H-elongata_contig191719.5304.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig191719:888..1055- (Himanthalia elongata Himel1 dioecious)back to top |