mRNA_H-elongata_contig191719.5304.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191719.5304.1
Unique NamemRNA_H-elongata_contig191719.5304.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: D8LIA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA3_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.580e-21
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   19 ISFLQAMGPPYGVVGPESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
            ++ ++AMGPPYGVVGPESLN +ILVHDFTHRLHMDIF+ QYYP SLTDW
Sbjct:  162 VNAIEAMGPPYGVVGPESLNKNILVHDFTHRLHMDIFDQQYYPPSLTDW 210          
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A6H5JY15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY15_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 9.930e-21
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   19 ISFLQAMGPPYGVVGPESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
            ++ L+AMGPPYGVVGPESLN++ILVHDFTHRLHMDIF  QYYP SLTDW
Sbjct:  347 VNALEAMGPPYGVVGPESLNNNILVHDFTHRLHMDIFGQQYYPPSLTDW 395          
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A7S3Y7G8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7G8_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 9.820e-13
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 PISVRSISFLQAMGPPYGVVGPE--SLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
            P +      LQAMGPPYGVVGP     ++ IL HDFTHR HM+IF   YYP  L+DW
Sbjct:  221 PFAALMSRALQAMGPPYGVVGPRCHGQSTRILTHDFTHRTHMEIFNQFYYPPQLSDW 277          
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: W7T9N6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9N6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.170e-12
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   19 ISFLQAMGPPYGVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
            I  L+  GPPYGVVGP  +  N+ IL HDFTHR+HM+IF+  YYP  L+DW
Sbjct:  216 IQVLEEFGPPYGVVGPLCKHGNTAILTHDFTHRMHMEIFDRLYYPEELSDW 266          
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A812R5F6_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812R5F6_SYMMI)

HSP 1 Score: 68.2 bits (165), Expect = 3.880e-12
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   19 ISFLQAMGPPYGVVGPESLNS--HILVHDFTHRLHMDIFEGQYYPASLTDW 165
            +  L  M PP+GVVGP SL S   IL HDF HR+HM+IFE  YYP  LTDW
Sbjct:  172 VKALLEMRPPFGVVGPSSLGSVDAILTHDFVHRVHMEIFEQDYYPPELTDW 222          
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A482STA7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STA7_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 6.000e-12
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   28 LQAMGPPYGVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
            L+++G PYGVVGP     N  IL HDF HR+HMD+FE  YYP  LTDW
Sbjct:  191 LESLGSPYGVVGPLCNQGNDKILTHDFVHRVHMDVFEMNYYPPELTDW 238          
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A7S2B2S3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2S3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.720e-9
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    1 PISVRSISFLQAMGPP-YGVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
            P + R ++ L  +GPP  G VGP  +  N  IL HDFTHR HM+IF G YYP  L DW
Sbjct:  162 PWAHRFVTKLANLGPPNIGAVGPLCQQGNQKILTHDFTHRTHMEIFGGWYYPQELVDW 219          
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: A0A7S3WIS4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WIS4_9SPIT)

HSP 1 Score: 59.7 bits (143), Expect = 4.850e-9
Identity = 29/49 (59.18%), Postives = 31/49 (63.27%), Query Frame = 1
Query:   28 LQAMGPP-YGVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
            L +  PP  GVVGP  +  NS IL HD THR HMDIF G YYP   TDW
Sbjct:  221 LASYSPPNVGVVGPICDEGNSRILTHDLTHRTHMDIFNGMYYPPVFTDW 269          
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: F0YNX4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNX4_AURAN)

HSP 1 Score: 58.2 bits (139), Expect = 1.840e-8
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 1
Query:   52 GVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
            G VGP  +  N  IL HDFTHR HMDIFEG YYP  L+DW
Sbjct:  418 GAVGPMCKQGNRKILTHDFTHRKHMDIFEGTYYPPELSDW 457          
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Match: F0YNU3_AURAN (Nudix hydrolase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNU3_AURAN)

HSP 1 Score: 58.2 bits (139), Expect = 1.850e-8
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   19 ISFLQAMGPPYGVVGP--ESLNSHILVHDFTHRLHMDIFEGQYYPASLTDW 165
            ++ L +MG   G VGP     N+ IL HDFTHR HMDIF+G YYP  L+DW
Sbjct:  584 VNALASMGN-VGAVGPLCRQGNTAILTHDFTHRTHMDIFDGAYYPPELSDW 633          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191719.5304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LIA3_ECTSI1.580e-2179.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JY15_9PHAE9.930e-2181.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3Y7G8_HETAK9.820e-1356.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7T9N6_9STRA3.170e-1258.82Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A812R5F6_SYMMI3.880e-1260.78Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A482STA7_9ARCH6.000e-1260.42Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2B2S3_9STRA1.720e-951.72Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3WIS4_9SPIT4.850e-959.18Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
F0YNX4_AURAN1.840e-865.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YNU3_AURAN1.850e-854.90Nudix hydrolase domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191719contigH-elongata_contig191719:888..1055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog2880.D8LIA3
EggNOG OGs2B66X@1,2S0KP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_001400.1
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930094.2520735-CDS-H-elongata_contig191719:887..10551622930094.2520735-CDS-H-elongata_contig191719:887..1055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191719 888..1055 -
1691679277.9671555-CDS-H-elongata_contig191719:887..10551691679277.9671555-CDS-H-elongata_contig191719:887..1055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191719 888..1055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191719.5304.1prot_H-elongata_contig191719.5304.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191719 888..1055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191719.5304.1

>prot_H-elongata_contig191719.5304.1 ID=prot_H-elongata_contig191719.5304.1|Name=mRNA_H-elongata_contig191719.5304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
PISVRSISFLQAMGPPYGVVGPESLNSHILVHDFTHRLHMDIFEGQYYPA
SLTDW*
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mRNA from alignment at H-elongata_contig191719:888..1055-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191719.5304.1 ID=mRNA_H-elongata_contig191719.5304.1|Name=mRNA_H-elongata_contig191719.5304.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig191719:888..1055- (Himanthalia elongata Himel1 dioecious)
CCAATCTCTGTGCGCTCAATCTCCTTCCTCCAGGCCATGGGCCCTCCGTA TGGCGTCGTGGGTCCCGAGTCCTTGAACAGCCACATCCTGGTGCACGACT TCACTCATCGGCTACACATGGATATATTCGAGGGACAGTACTATCCGGCG TCTCTCACCGACTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig191719:888..1055-

>mRNA_H-elongata_contig191719.5304.1 ID=mRNA_H-elongata_contig191719.5304.1|Name=mRNA_H-elongata_contig191719.5304.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig191719:888..1055- (Himanthalia elongata Himel1 dioecious)
CCAATCTCTGTGCGCTCAATCTCCTTCCTCCAGGCCATGGGCCCTCCGTA
TGGCGTCGTGGGTCCCGAGTCCTTGAACAGCCACATCCTGGTGCACGACT
TCACTCATCGGCTACACATGGATATATTCGAGGGACAGTACTATCCGGCG
TCTCTCACCGACTGGTGACCAATCTCTGTGCGCTCAATCTCCTTCCTCCA
GGCCATGGGCCCTCCGTATGGCGTCGTGGGTCCCGAGTCCTTGAACAGCC
ACATCCTGGTGCACGACTTCACTCATCGGCTACACATGGATATATTCGAG
GGACAGTACTATCCGGCGTCTCTCACCGACTGGTGA
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