mRNA_H-elongata_contig190867.5273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190867.5273.1
Unique NamemRNA_H-elongata_contig190867.5273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: S8EP84_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8EP84_9LAMI)

HSP 1 Score: 67.0 bits (162), Expect = 7.090e-13
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 SALPQIFLIERSTSIDFAEIQLSPTLIGLSPLNSSHPSILPHTRVRPSKEC 153
            SALP+   I RST IDFAE QL P L+GLSPL +SHP ILPHT VR SK C
Sbjct:   51 SALPRAIDIIRSTKIDFAENQLYPILVGLSPLATSHPRILPHTWVRSSKAC 101          
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A0V0GJC4_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GJC4_SOLCH)

HSP 1 Score: 63.2 bits (152), Expect = 4.270e-11
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = -3
Query:    2 WRAEPVYVAKYWDDLSLGVKGQSKSVIAGFLRNLLK*SVLSRKSGVEH 145
            WR EP YVAKY DDL LGVKGQ +S IAGF RNL + SV  R   VEH
Sbjct:    5 WRTEPTYVAKYGDDLWLGVKGQPRSDIAGFPRNLFQXSVXCRWPEVEH 52          
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A158T0E6_HAEIF (Uncharacterized protein n=1 Tax=Haemophilus influenzae TaxID=727 RepID=A0A158T0E6_HAEIF)

HSP 1 Score: 61.2 bits (147), Expect = 8.660e-11
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 3
Query:   12 PDFLDRTLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLPLQYQPA 176
            P  +   LY NRFR  PAI+ FDWPFTP  KSS  F+T  GS LQ +LP   QPA
Sbjct:   30 PKGVTSRLYLNRFRGEPAISRFDWPFTPSHKSSANFSTLVGSVLQLVLP-NLQPA 83          
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: E2S3A3_9CORY (Uncharacterized protein n=1 Tax=Corynebacterium pseudogenitalium ATCC 33035 TaxID=525264 RepID=E2S3A3_9CORY)

HSP 1 Score: 60.1 bits (144), Expect = 1.890e-10
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 3
Query:   12 PDFLDRTLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLPL 161
            P   + TL+ N FR  PAIT+FDWPFTP   SS  F+TY GS L  +L L
Sbjct:   19 PPSYNTTLHLNAFRGEPAITEFDWPFTPTHSSSPQFSTYVGSRLHNLLQL 68          
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A0B2R388_GLYSO (Putative mitochondrial protein n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2R388_GLYSO)

HSP 1 Score: 64.3 bits (155), Expect = 2.110e-10
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 SALPQIFLIERSTSIDFAEIQLSPTLIGLSPLNSSHPSILPHTRVRPSK 147
            SALP+   I RST IDFAE QL P L+GLSPL +SHP ILPHT VR SK
Sbjct:  283 SALPRAIDIMRSTEIDFAENQLYPILVGLSPLATSHPRILPHTWVRSSK 331          
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A381RWU6_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381RWU6_9ZZZZ)

HSP 1 Score: 59.7 bits (143), Expect = 5.140e-10
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 3
Query:   12 PDFLDRTLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLP 158
            P + + TL    FRR P I++FDWPFTP   SS++F+TY GS LQ +LP
Sbjct:   46 PRYTNITLPLKAFRREPDISEFDWPFTPNHNSSKHFSTYPGSVLQCVLP 94          
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A8J9WUS8_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WUS8_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 2.530e-9
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 3
Query:   30 TLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLPLQYQPA 176
            T + N FRR PAI++FDW FTP  KSS   AT TGS LQ++LP  +QPA
Sbjct:   31 TPHLNGFRRKPAISEFDWLFTPSHKSSLPIATDTGSVLQKVLP-PFQPA 78          
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A6A5KV19_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL)

HSP 1 Score: 59.3 bits (142), Expect = 1.160e-8
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 3
Query:   18 FLDRTLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLPLQYQPA 176
            F  +  Y ++FR  PAI++FDWPFTP  KSSQ  AT  GSALQ +LP   QPA
Sbjct:  338 FRRKDPYLDQFRGEPAISEFDWPFTPSHKSSQSIATDAGSALQLVLP-NLQPA 389          
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A382FHV2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FHV2_9ZZZZ)

HSP 1 Score: 54.7 bits (130), Expect = 4.850e-8
Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 3
Query:   12 PDFLDRTLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLP 158
            P +   TL    FRR P I++FDWPFTP   SS  F+T  GS LQ +LP
Sbjct:   47 PRYTTLTLSLKTFRREPDISEFDWPFTPNHSSSPSFSTLVGSVLQCVLP 95          
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A5A7UM16_CUCME (Uncharacterized protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UM16_CUCME)

HSP 1 Score: 55.8 bits (133), Expect = 1.880e-7
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = -3
Query:   38 SGNILWRAEPVYVAKYWDDLSLGVKGQSKSVIAGFLRNLLK 160
            S N  W  EP YVAKY DDL LGVKGQ +S I GFLRNL +
Sbjct:  132 SSNSPWWIEPTYVAKYMDDLWLGVKGQPRSDIVGFLRNLFQ 172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
S8EP84_9LAMI7.090e-1368.63Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A0V0GJC4_SOLCH4.270e-1166.67Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A158T0E6_HAEIF8.660e-1156.36Uncharacterized protein n=1 Tax=Haemophilus influe... [more]
E2S3A3_9CORY1.890e-1054.00Uncharacterized protein n=1 Tax=Corynebacterium ps... [more]
A0A0B2R388_GLYSO2.110e-1069.39Putative mitochondrial protein n=1 Tax=Glycine soj... [more]
A0A381RWU6_9ZZZZ5.140e-1053.06Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A8J9WUS8_9CHLO2.530e-959.18Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A6A5KV19_LUPAL1.160e-856.60Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A382FHV2_9ZZZZ4.850e-851.02Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A5A7UM16_CUCME1.880e-765.85Uncharacterized protein n=1 Tax=Cucumis melo var. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190867contigH-elongata_contig190867:1..207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.1
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog3880.AES58606
EggNOG OGs2CYJ8@1,2S4RZ@2759,37W3F@33090,3GKHF@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.4302819-CDS-H-elongata_contig190867:0..2071622930091.4302819-CDS-H-elongata_contig190867:0..207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190867 1..207 +
1691679276.911834-CDS-H-elongata_contig190867:0..2071691679276.911834-CDS-H-elongata_contig190867:0..207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190867 1..207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190867.5273.1prot_H-elongata_contig190867.5273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190867 1..207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190867.5273.1

>prot_H-elongata_contig190867.5273.1 ID=prot_H-elongata_contig190867.5273.1|Name=mRNA_H-elongata_contig190867.5273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
SALPQIFLIERSTSIDFAEIQLSPTLIGLSPLNSSHPSILPHTRVRPSKE
CCHYNISLLKFRSAGFGY*
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mRNA from alignment at H-elongata_contig190867:1..207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190867.5273.1 ID=mRNA_H-elongata_contig190867.5273.1|Name=mRNA_H-elongata_contig190867.5273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig190867:1..207+ (Himanthalia elongata Himel1 dioecious)
AGTGCTCTACCCCAGATTTTCTTGATAGAACGCTCTACTTCAATAGATTT CGCAGAAATCCAGCTATCACCGACTTTGATTGGCCTTTCACCCCTAAACT CAAGTCATCCCAGTATTTTGCCACATACACGGGTTCGGCCCTCCAAAGAA TGTTGCCACTACAATATCAGCCTGCTCAAGTTTAGATCAGCCGGTTTCGG GTACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig190867:1..207+

>mRNA_H-elongata_contig190867.5273.1 ID=mRNA_H-elongata_contig190867.5273.1|Name=mRNA_H-elongata_contig190867.5273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig190867:1..207+ (Himanthalia elongata Himel1 dioecious)
AGTGCTCTACCCCAGATTTTCTTGATAGAACGCTCTACTTCAATAGATTT
CGCAGAAATCCAGCTATCACCGACTTTGATTGGCCTTTCACCCCTAAACT
CAAGTCATCCCAGTATTTTGCCACATACACGGGTTCGGCCCTCCAAAGAA
TGTTGCCACTACAATATCAGCCTGCTCAAGTTTAGATCAGCCGGTTTCGG
GTACTAAAGTGCTCTACCCCAGATTTTCTTGATAGAACGCTCTACTTCAA
TAGATTTCGCAGAAATCCAGCTATCACCGACTTTGATTGGCCTTTCACCC
CTAAACTCAAGTCATCCCAGTATTTTGCCACATACACGGGTTCGGCCCTC
CAAAGAATGTTGCCACTACAATATCAGCCTGCTCAAGTTTAGATCAGCCG
GTTTCGGGTACTAA
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