mRNA_H-elongata_contig190867.5273.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: S8EP84_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8EP84_9LAMI) HSP 1 Score: 67.0 bits (162), Expect = 7.090e-13 Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1 SALPQIFLIERSTSIDFAEIQLSPTLIGLSPLNSSHPSILPHTRVRPSKEC 153
SALP+ I RST IDFAE QL P L+GLSPL +SHP ILPHT VR SK C
Sbjct: 51 SALPRAIDIIRSTKIDFAENQLYPILVGLSPLATSHPRILPHTWVRSSKAC 101
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A0V0GJC4_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GJC4_SOLCH) HSP 1 Score: 63.2 bits (152), Expect = 4.270e-11 Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = -3
Query: 2 WRAEPVYVAKYWDDLSLGVKGQSKSVIAGFLRNLLK*SVLSRKSGVEH 145
WR EP YVAKY DDL LGVKGQ +S IAGF RNL + SV R VEH
Sbjct: 5 WRTEPTYVAKYGDDLWLGVKGQPRSDIAGFPRNLFQXSVXCRWPEVEH 52
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A158T0E6_HAEIF (Uncharacterized protein n=1 Tax=Haemophilus influenzae TaxID=727 RepID=A0A158T0E6_HAEIF) HSP 1 Score: 61.2 bits (147), Expect = 8.660e-11 Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 3
Query: 12 PDFLDRTLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLPLQYQPA 176
P + LY NRFR PAI+ FDWPFTP KSS F+T GS LQ +LP QPA
Sbjct: 30 PKGVTSRLYLNRFRGEPAISRFDWPFTPSHKSSANFSTLVGSVLQLVLP-NLQPA 83
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: E2S3A3_9CORY (Uncharacterized protein n=1 Tax=Corynebacterium pseudogenitalium ATCC 33035 TaxID=525264 RepID=E2S3A3_9CORY) HSP 1 Score: 60.1 bits (144), Expect = 1.890e-10 Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 3
Query: 12 PDFLDRTLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLPL 161
P + TL+ N FR PAIT+FDWPFTP SS F+TY GS L +L L
Sbjct: 19 PPSYNTTLHLNAFRGEPAITEFDWPFTPTHSSSPQFSTYVGSRLHNLLQL 68
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A0B2R388_GLYSO (Putative mitochondrial protein n=1 Tax=Glycine soja TaxID=3848 RepID=A0A0B2R388_GLYSO) HSP 1 Score: 64.3 bits (155), Expect = 2.110e-10 Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 1 SALPQIFLIERSTSIDFAEIQLSPTLIGLSPLNSSHPSILPHTRVRPSK 147
SALP+ I RST IDFAE QL P L+GLSPL +SHP ILPHT VR SK
Sbjct: 283 SALPRAIDIMRSTEIDFAENQLYPILVGLSPLATSHPRILPHTWVRSSK 331
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A381RWU6_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381RWU6_9ZZZZ) HSP 1 Score: 59.7 bits (143), Expect = 5.140e-10 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 3
Query: 12 PDFLDRTLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLP 158
P + + TL FRR P I++FDWPFTP SS++F+TY GS LQ +LP
Sbjct: 46 PRYTNITLPLKAFRREPDISEFDWPFTPNHNSSKHFSTYPGSVLQCVLP 94
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A8J9WUS8_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WUS8_9CHLO) HSP 1 Score: 57.4 bits (137), Expect = 2.530e-9 Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 3
Query: 30 TLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLPLQYQPA 176
T + N FRR PAI++FDW FTP KSS AT TGS LQ++LP +QPA
Sbjct: 31 TPHLNGFRRKPAISEFDWLFTPSHKSSLPIATDTGSVLQKVLP-PFQPA 78
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A6A5KV19_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL) HSP 1 Score: 59.3 bits (142), Expect = 1.160e-8 Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 3
Query: 18 FLDRTLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLPLQYQPA 176
F + Y ++FR PAI++FDWPFTP KSSQ AT GSALQ +LP QPA
Sbjct: 338 FRRKDPYLDQFRGEPAISEFDWPFTPSHKSSQSIATDAGSALQLVLP-NLQPA 389
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A382FHV2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FHV2_9ZZZZ) HSP 1 Score: 54.7 bits (130), Expect = 4.850e-8 Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 3
Query: 12 PDFLDRTLYFNRFRRNPAITDFDWPFTPKLKSSQYFATYTGSALQRMLP 158
P + TL FRR P I++FDWPFTP SS F+T GS LQ +LP
Sbjct: 47 PRYTTLTLSLKTFRREPDISEFDWPFTPNHSSSPSFSTLVGSVLQCVLP 95
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Match: A0A5A7UM16_CUCME (Uncharacterized protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UM16_CUCME) HSP 1 Score: 55.8 bits (133), Expect = 1.880e-7 Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = -3
Query: 38 SGNILWRAEPVYVAKYWDDLSLGVKGQSKSVIAGFLRNLLK 160
S N W EP YVAKY DDL LGVKGQ +S I GFLRNL +
Sbjct: 132 SSNSPWWIEPTYVAKYMDDLWLGVKGQPRSDIVGFLRNLFQ 172 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190867.5273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig190867.5273.1 >prot_H-elongata_contig190867.5273.1 ID=prot_H-elongata_contig190867.5273.1|Name=mRNA_H-elongata_contig190867.5273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp SALPQIFLIERSTSIDFAEIQLSPTLIGLSPLNSSHPSILPHTRVRPSKEback to top mRNA from alignment at H-elongata_contig190867:1..207+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig190867.5273.1 ID=mRNA_H-elongata_contig190867.5273.1|Name=mRNA_H-elongata_contig190867.5273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig190867:1..207+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig190867:1..207+ >mRNA_H-elongata_contig190867.5273.1 ID=mRNA_H-elongata_contig190867.5273.1|Name=mRNA_H-elongata_contig190867.5273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig190867:1..207+ (Himanthalia elongata Himel1 dioecious)back to top |