mRNA_H-elongata_contig189049.5190.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 7.160e-16 Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 10 LDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
+D DD + D+ + E+PDG+ + +S PAAL L+ + +L+ L MGWF G+ITR+SQ RT HLYD+R L+ D
Sbjct: 7 VDDDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLD 81
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 3.190e-15 Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 4 AVLDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
+++D DD + D+ + E+PDG+ + + PAA+ +L+ + +L+ L MGWF GVITRKSQ RT HLYD+R L+ D
Sbjct: 250 SLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLD 326
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 7.840e-15 Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 4 AVLDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
+++D DD + D+ +L E+PDG+ + +S PAAL + + +L+ L MGWF VITR+SQ RT HLYD+R L+ D
Sbjct: 127 SLVDDDDSMESDDEILAMEIPDGFRIQASTPAALDSSSPQRGVLVRLGMGWFGRVITRQSQERTRHLYDYRVHLDLD 203
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 1.880e-14 Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 7 VLDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
++D DD + D + E+PDG+ + +S PAAL +L+ + +L+ L MGW G+ITR+SQ RT HLYD+R L+ D
Sbjct: 105 LVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLD 180
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 1.370e-13 Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 37 DEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
D+ + E+PDG+ + +S PAAL +L+ + +L+ L MGWF GVITR+SQ RT HLYD+R L+ D
Sbjct: 546 DDEIRAMEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLD 611
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.250e-12 Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1
Query: 37 DEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
DE + E+PD + + + PAAL +L+ + +L+ L MGWF GVITR+SQ RT HLYD+ L+ D
Sbjct: 4 DEEIHAMEIPDRFRIQACTPAALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLD 69
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5KY33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY33_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 5.710e-11 Identity = 27/72 (37.50%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 10 LDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFL 225
LD DD+++ +E L ++PDG+ + +S P AL +++V + +L+ L +GWF GV++R+S + YD+R L
Sbjct: 20 LDDDDELSPEEETLKMDIPDGFRLQASPPPALDQSIVKRGVLVKLGLGWFGGVLSRRSHPASRQEYDYRVIL 91
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5KQX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX6_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 6.190e-8 Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query: 4 AVLDMDDDIADDEA---LLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
A+LD DD + D+ E+P G+ + S PAAL R L+ + +L L MGWF G+I ++S R HLYD+ LE D
Sbjct: 10 ALLDEDDSMDPDDPEDETQGMEIPAGFRLQESTPAALDRLLLQRGVLARLGMGWFGGLIIQRSPQR--HLYDYCVQLEVD 87
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5KHD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD5_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 7.550e-8 Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 4 AVLDMDDDIADDEA---LLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
A+LD DD + D+ E+P G+ + S PAAL R+L+ +L+ L MGWF G+I ++S R HLYD+ LE D
Sbjct: 10 ALLDEDDSMDPDDPGDETQGMEIPAGFRLQESTPAALDRSLLQLGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVD 87
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 1.270e-7 Identity = 25/62 (40.32%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 4 AVLDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQA 189
+++D DD + D+ E+PDG+ + +S PAAL +L+ + +L+ L MGWF G+ITR+S++
Sbjct: 641 SLVDDDDSMESDDETHGMEIPDGFHIQASTPAALDSSLLQRGVLVGLGMGWFGGLITRQSRS 702 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig189049.5190.1 >prot_H-elongata_contig189049.5190.1 ID=prot_H-elongata_contig189049.5190.1|Name=mRNA_H-elongata_contig189049.5190.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp MDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGback to top mRNA from alignment at H-elongata_contig189049:796..1035+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig189049.5190.1 ID=mRNA_H-elongata_contig189049.5190.1|Name=mRNA_H-elongata_contig189049.5190.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig189049:796..1035+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig189049:796..1035+ >mRNA_H-elongata_contig189049.5190.1 ID=mRNA_H-elongata_contig189049.5190.1|Name=mRNA_H-elongata_contig189049.5190.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig189049:796..1035+ (Himanthalia elongata Himel1 dioecious)back to top |