mRNA_H-elongata_contig189049.5190.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189049.5190.1
Unique NamemRNA_H-elongata_contig189049.5190.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.160e-16
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   10 LDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
            +D DD +  D+ +   E+PDG+ + +S PAAL   L+ + +L+ L MGWF G+ITR+SQ RT HLYD+R  L+ D
Sbjct:    7 VDDDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLD 81          
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.190e-15
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    4 AVLDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
            +++D DD +  D+ +   E+PDG+ + +  PAA+  +L+ + +L+ L MGWF GVITRKSQ RT HLYD+R  L+ D
Sbjct:  250 SLVDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLD 326          
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5KUT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 7.840e-15
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    4 AVLDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
            +++D DD +  D+ +L  E+PDG+ + +S PAAL  +   + +L+ L MGWF  VITR+SQ RT HLYD+R  L+ D
Sbjct:  127 SLVDDDDSMESDDEILAMEIPDGFRIQASTPAALDSSSPQRGVLVRLGMGWFGRVITRQSQERTRHLYDYRVHLDLD 203          
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.880e-14
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    7 VLDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
            ++D DD +  D  +   E+PDG+ + +S PAAL  +L+ + +L+ L MGW  G+ITR+SQ RT HLYD+R  L+ D
Sbjct:  105 LVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLD 180          
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.370e-13
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   37 DEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
            D+ +   E+PDG+ + +S PAAL  +L+ + +L+ L MGWF GVITR+SQ RT HLYD+R  L+ D
Sbjct:  546 DDEIRAMEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLD 611          
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.250e-12
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   37 DEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
            DE +   E+PD + + +  PAAL  +L+ + +L+ L MGWF GVITR+SQ RT HLYD+   L+ D
Sbjct:    4 DEEIHAMEIPDRFRIQACTPAALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLD 69          
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5KY33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY33_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.710e-11
Identity = 27/72 (37.50%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   10 LDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFL 225
            LD DD+++ +E  L  ++PDG+ + +S P AL +++V + +L+ L +GWF GV++R+S   +   YD+R  L
Sbjct:   20 LDDDDELSPEEETLKMDIPDGFRLQASPPPALDQSIVKRGVLVKLGLGWFGGVLSRRSHPASRQEYDYRVIL 91          
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5KQX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.190e-8
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    4 AVLDMDDDIADDEA---LLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
            A+LD DD +  D+        E+P G+ +  S PAAL R L+ + +L  L MGWF G+I ++S  R  HLYD+   LE D
Sbjct:   10 ALLDEDDSMDPDDPEDETQGMEIPAGFRLQESTPAALDRLLLQRGVLARLGMGWFGGLIIQRSPQR--HLYDYCVQLEVD 87          
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: A0A6H5KHD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.550e-8
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    4 AVLDMDDDIADDEA---LLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQARTSHLYDFRGFLETD 234
            A+LD DD +  D+        E+P G+ +  S PAAL R+L+   +L+ L MGWF G+I ++S  R  HLYD+   LE D
Sbjct:   10 ALLDEDDSMDPDDPGDETQGMEIPAGFRLQESTPAALDRSLLQLGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVD 87          
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.270e-7
Identity = 25/62 (40.32%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    4 AVLDMDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMGVITRKSQA 189
            +++D DD +  D+     E+PDG+ + +S PAAL  +L+ + +L+ L MGWF G+ITR+S++
Sbjct:  641 SLVDDDDSMESDDETHGMEIPDGFHIQASTPAALDSSLLQRGVLVGLGMGWFGGLITRQSRS 702          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189049.5190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KHL7_9PHAE7.160e-1646.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J8_9PHAE3.190e-1545.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUT4_9PHAE7.840e-1545.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B3_9PHAE1.880e-1444.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE1.370e-1350.00C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUW4_9PHAE1.250e-1246.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY33_9PHAE5.710e-1137.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX6_9PHAE6.190e-841.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHD5_9PHAE7.550e-841.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LRF1_ECTSI1.270e-740.32C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189049contigH-elongata_contig189049:796..1035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size242
Cds size225
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.1222596-UTR-H-elongata_contig189049:795..8101622930081.1222596-UTR-H-elongata_contig189049:795..810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189049 796..810 +
1691679273.5351632-UTR-H-elongata_contig189049:795..8101691679273.5351632-UTR-H-elongata_contig189049:795..810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189049 796..810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.1455243-CDS-H-elongata_contig189049:810..10351622930081.1455243-CDS-H-elongata_contig189049:810..1035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189049 811..1035 +
1691679273.5439072-CDS-H-elongata_contig189049:810..10351691679273.5439072-CDS-H-elongata_contig189049:810..1035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189049 811..1035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189049.5190.1prot_H-elongata_contig189049.5190.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189049 811..1035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189049.5190.1

>prot_H-elongata_contig189049.5190.1 ID=prot_H-elongata_contig189049.5190.1|Name=mRNA_H-elongata_contig189049.5190.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MDDDIADDEALLPFEVPDGYSVVSSAPAALTRNLVNQEILLWLRMGWFMG
VITRKSQARTSHLYDFRGFLETDGR
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mRNA from alignment at H-elongata_contig189049:796..1035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189049.5190.1 ID=mRNA_H-elongata_contig189049.5190.1|Name=mRNA_H-elongata_contig189049.5190.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig189049:796..1035+ (Himanthalia elongata Himel1 dioecious)
GAGGCTGTGCTGGACATGGACGACGACATCGCCGATGATGAGGCCTTATT ACCGTTTGAAGTCCCTGACGGTTATTCTGTTGTAAGCTCAGCACCTGCCG CCCTCACTCGAAATCTTGTTAACCAAGAGATACTGCTTTGGCTGAGGATG GGTTGGTTCATGGGGGTCATCACACGAAAGTCCCAAGCACGCACAAGCCA TCTCTACGACTTCAGAGGGTTTCTCGAGACCGACGGCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig189049:796..1035+

>mRNA_H-elongata_contig189049.5190.1 ID=mRNA_H-elongata_contig189049.5190.1|Name=mRNA_H-elongata_contig189049.5190.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig189049:796..1035+ (Himanthalia elongata Himel1 dioecious)
ATGGACGACGACATCGCCGATGATGAGGCCTTATTACCGTTTGAAGTCCC
TGACGGTTATTCTGTTGTAAGCTCAGCACCTGCCGCCCTCACTCGAAATC
TTGTTAACCAAGAGATACTGCTTTGGCTGAGGATGGGTTGGTTCATGGGG
GTCATCACACGAAAGTCCCAAGCACGCACAAGCCATCTCTACGACTTCAG
AGGGTTTCTCGAGACCGACGGCAGGATGGACGACGACATCGCCGATGATG
AGGCCTTATTACCGTTTGAAGTCCCTGACGGTTATTCTGTTGTAAGCTCA
GCACCTGCCGCCCTCACTCGAAATCTTGTTAACCAAGAGATACTGCTTTG
GCTGAGGATGGGTTGGTTCATGGGGGTCATCACACGAAAGTCCCAAGCAC
GCACAAGCCATCTCTACGACTTCAGAGGGTTTCTCGAGACCGACGGCAGG
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