mRNA_H-elongata_contig188623.5168.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188623.5168.1
Unique NamemRNA_H-elongata_contig188623.5168.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188623.5168.1 vs. uniprot
Match: A0A6H5KRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.320e-25
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 QEGYLWIPVAVERFDQNTIDPLVKMCQVNYAKYSAAPWVLPMGGLLALNSGCAELSRDTVQIVRMTVL 204
            ++G+LWIPV+V +FD    DPLVKMCQVNY  YSAAPW+LPMGGLL++ SGCA+L RDTVQIV M+ L
Sbjct:  193 KDGHLWIPVSVNKFDNLETDPLVKMCQVNYDSYSAAPWLLPMGGLLSIASGCADLKRDTVQIVHMSTL 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188623.5168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRY1_9PHAE2.320e-2569.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188623contigH-elongata_contig188623:296..1189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_000120.1
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.9306939-CDS-H-elongata_contig188623:295..4241622930078.9306939-CDS-H-elongata_contig188623:295..424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188623 296..424 -
1691679272.6489823-CDS-H-elongata_contig188623:295..4241691679272.6489823-CDS-H-elongata_contig188623:295..424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188623 296..424 -
1622930078.953231-CDS-H-elongata_contig188623:1108..11891622930078.953231-CDS-H-elongata_contig188623:1108..1189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188623 1109..1189 -
1691679272.6589212-CDS-H-elongata_contig188623:1108..11891691679272.6589212-CDS-H-elongata_contig188623:1108..1189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188623 1109..1189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188623.5168.1prot_H-elongata_contig188623.5168.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188623 296..1189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188623.5168.1

>prot_H-elongata_contig188623.5168.1 ID=prot_H-elongata_contig188623.5168.1|Name=mRNA_H-elongata_contig188623.5168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
QEGYLWIPVAVERFDQNTIDPLVKMCQVNYAKYSAAPWVLPMGGLLALNS
GCAELSRDTVQIVRMTVLAV
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mRNA from alignment at H-elongata_contig188623:296..1189-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188623.5168.1 ID=mRNA_H-elongata_contig188623.5168.1|Name=mRNA_H-elongata_contig188623.5168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=894bp|location=Sequence derived from alignment at H-elongata_contig188623:296..1189- (Himanthalia elongata Himel1 dioecious)
CAGGAGGGCTACCTTTGGATTCCCGTCGCTGTCGAAAGGTTCGACCAAAA
CACGATAGATCCGCTCGTGAAGATGTGTCAGGTGAGAGGAGGGAATATGG
ACTTTACGCTGTTTCTTTTATGGTTTGTCGCTGTATTGATAGTGTAATGT
TTATGCGATATATGGATGTTCGGAGAGTTAGAATGAGCCTACAGTCTTTT
AAATAAAAATATAGTCTACATTTTTTTTTTTTTAAACGACATGGGACTCA
TTCCAACCCTCCGAATATCCACGCCTTCTTAGCACCGTGAGAGGTGCTTA
TATATATTTTTTCATGTGGTAGTAGAAAGAGCGTCCGGGGTTTCCTGTTG
TGTTTAAGGCGGAAAAACTCTTTATCGCAGAGAGGGAGTTTTTTCTATTT
CACCCCTTTCAAGGACAGGCGTTCGCTCGATCAGCTTGTCGCACTCCTTT
GCAGGCAAGCTGGTGCTCTGGCTTTCCCCCACCCAGCCACCCTGTGCTAA
GCGAGAATATGTTCCAGCTTGTGAAAGAGGGTTAGGCAAGGCCGTATTTA
GCATGAAGACCGAGATATGCAAAATAATCAATTTGGGGGTAATATTATAG
CCTACGTCATAATTAGTTCGTTTTTGTTTTGTTTTCCTATCATGGCAACA
GCGTTTCGGATACCCTGTCTCTTCTTTATACATATTTATATATTATCCCC
TGTTGTGACATCCATCGCTCGGAAACCCCCTCTCCCCCCCCCCCCTTCGT
GCATCTTGCCCGAAGGTAAACTACGCTAAGTACTCGGCGGCGCCTTGGGT
GCTACCCATGGGGGGGCTGCTGGCGCTCAACTCAGGGTGCGCGGAGCTTA
GCAGAGACACGGTCCAGATCGTGCGGATGACTGTGCTTGCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig188623:296..1189-

>mRNA_H-elongata_contig188623.5168.1 ID=mRNA_H-elongata_contig188623.5168.1|Name=mRNA_H-elongata_contig188623.5168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig188623:296..1189- (Himanthalia elongata Himel1 dioecious)
CAGGAGGGCTACCTTTGGATTCCCGTCGCTGTCGAAAGGTTCGACCAAAA
CACGATAGATCCGCTCGTGAAGATGTGTCAGCAGGAGGGCTACCTTTGGA
TTCCCGTCGCTGTCGAAAGGTTCGACCAAAACACGATAGATCCGCTCGTG
AAGATGTGTCAGGTAAACTACGCTAAGTACTCGGCGGCGCCTTGGGTGCT
ACCCATGGGGGGGCTGCTGGCGCTCAACTCAGGGTGCGCGGAGCTTAGCA
GAGACACGGTCCAGATCGTGCGGATGACTGTGCTTGCGGTGGTAAACTAC
GCTAAGTACTCGGCGGCGCCTTGGGTGCTACCCATGGGGGGGCTGCTGGC
GCTCAACTCAGGGTGCGCGGAGCTTAGCAGAGACACGGTCCAGATCGTGC
GGATGACTGTGCTTGCGGTG
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