mRNA_H-elongata_contig188270.5148.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188270.5148.1
Unique NamemRNA_H-elongata_contig188270.5148.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: B7G2N6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2N6_PHATC)

HSP 1 Score: 124 bits (312), Expect = 1.070e-31
Identity = 55/79 (69.62%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
            Y E+DPVRG DSFAAFEEVL LAKQ + D VL+ GDLFH+N+PSRRT+Y TM+I+RR+CMG +PVR QI+S+QA NF+N
Sbjct:   44 YAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRN 122          
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: B7G2N5_PHATC (Double-strand break repair protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2N5_PHATC)

HSP 1 Score: 124 bits (312), Expect = 2.050e-31
Identity = 55/79 (69.62%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
            Y E+DPVRG DSFAAFEEVL LAKQ + D VL+ GDLFH+N+PSRRT+Y TM+I+RR+CMG +PVR QI+S+QA NF+N
Sbjct:   44 YAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRN 122          
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A7S4MXX5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXX5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.070e-31
Identity = 54/78 (69.23%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFK 234
            Y ERDP+RG DSFAAFEEVL LAK+ K D +LL GDLFH+NKPSRRT+++TM+I+RR+CMG +PV+FQI+S+QA NF+
Sbjct:   47 YAERDPIRGLDSFAAFEEVLALAKRHKCDMLLLAGDLFHDNKPSRRTLHKTMEIIRRYCMGPQPVQFQIVSDQAENFR 124          
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A2P4Y1D3_9STRA (DNA repair protein (Mre11) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y1D3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.070e-31
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
            Y E+DPVRG DSF +F E+L LA++ +VD +LLGGDLFH+NKPSRRTMY TM +LR HCMGD  V FQ++S+Q+ NF N
Sbjct:   27 YAEKDPVRGNDSFRSFREILQLAQRERVDLLLLGGDLFHDNKPSRRTMYETMRLLRNHCMGDGAVNFQVVSDQSVNFPN 105          
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: UPI001C4E8808 (double-strand break repair protein MRE11-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4E8808)

HSP 1 Score: 116 bits (290), Expect = 5.940e-31
Identity = 50/79 (63.29%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
            YME+D VR  DSF AFEE+  +A+Q++VDFVLLGGDLFHENKPSR T+ +T++ILRR+C+ D PV+FQ++S+Q  NF N
Sbjct:   25 YMEKDEVRRHDSFQAFEEICSIAEQKQVDFVLLGGDLFHENKPSRTTLVKTIEILRRYCLNDRPVQFQVVSDQTMNFAN 103          
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A1Y2ED83_9FUNG (Metallo-dependent phosphatase n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2ED83_9FUNG)

HSP 1 Score: 114 bits (285), Expect = 6.660e-31
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNF 231
            YMERDP+R  DSF  FEE+LL AKQ  VD +LLGGDLFH+NKPSR+T+Y T+ +LR+HCMGD+P + + +S+Q  NF
Sbjct:   26 YMERDPLRSNDSFQTFEEILLYAKQYNVDMMLLGGDLFHDNKPSRKTLYNTIALLRKHCMGDKPCQLEFLSDQKRNF 102          
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.340e-30
Identity = 56/62 (90.32%), Postives = 61/62 (98.39%), Query Frame = 1
Query:   55 VLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKNR 240
            +LLLAK+RKVDFVLLGGDLFHENKPSRRT+Y+TMDILRRHCMGDEPV FQIISEQAHNFK+R
Sbjct:    1 MLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDR 62          
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A482RUZ6_9ARCH (Metallophos domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUZ6_9ARCH)

HSP 1 Score: 112 bits (280), Expect = 1.910e-30
Identity = 48/78 (61.54%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFK 234
            Y E+DPVR QDSFAAFEEVL  AK+ KVDF+LL GD+FHENKPSRRTM+ TM++LR +C  ++P+  ++++EQ+  FK
Sbjct:   20 YAEKDPVRCQDSFAAFEEVLRTAKENKVDFILLAGDMFHENKPSRRTMHNTMELLRMYCFSEDPIYLEVLNEQSEIFK 97          
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A7S2UFV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFV9_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.110e-30
Identity = 53/79 (67.09%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
            Y E+DP+RG DSFAA EEVL LA++ K D VLL GDLFH+NKPSRRT+++TM+ILRR+CMG  PV+FQI+S+QA NF++
Sbjct:   90 YCEKDPIRGSDSFAALEEVLSLARRHKCDMVLLAGDLFHDNKPSRRTLHKTMEILRRYCMGPNPVQFQIVSDQAANFRS 168          
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A1Y1U9Y7_9FUNG (Metallo-dependent phosphatase (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1U9Y7_9FUNG)

HSP 1 Score: 112 bits (280), Expect = 3.510e-30
Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
            YMERDP+R  DSF  FEE+LL AK+  VD +LLGGDLFH+NKPSR+T+Y T+ +LR+HCMGD+P + + +S+Q  NF +
Sbjct:   27 YMERDPLRSNDSFQTFEEILLYAKKYNVDMMLLGGDLFHDNKPSRKTLYNTIALLRQHCMGDKPCQLEFLSDQKKNFSS 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7G2N6_PHATC1.070e-3169.62Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
B7G2N5_PHATC2.050e-3169.62Double-strand break repair protein n=2 Tax=Phaeoda... [more]
A0A7S4MXX5_9STRA2.070e-3169.23Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2P4Y1D3_9STRA2.070e-3164.56DNA repair protein (Mre11) n=1 Tax=Phytophthora pa... [more]
UPI001C4E88085.940e-3163.29double-strand break repair protein MRE11-like n=1 ... [more]
A0A1Y2ED83_9FUNG6.660e-3162.34Metallo-dependent phosphatase n=1 Tax=Neocallimast... [more]
A0A6H5JH84_9PHAE1.340e-3090.32Mre11_DNA_bind domain-containing protein n=2 Tax=E... [more]
A0A482RUZ6_9ARCH1.910e-3061.54Metallophos domain-containing protein n=1 Tax=arch... [more]
A0A7S2UFV9_9STRA3.110e-3067.09Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A1Y1U9Y7_9FUNG3.510e-3059.49Metallo-dependent phosphatase (Fragment) n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188270contigH-elongata_contig188270:103..850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue7.4e-36
Seed eggNOG ortholog2880.D7FN26
Preferred nameMRE11
KEGG koko:K10865
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
GOsGO:0000228,GO:0000785,GO:0000791,GO:0000793,GO:0000794,GO:0000795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013,GO:0099086
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0420@1,KOG2310@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188270.5148.1prot_H-elongata_contig188270.5148.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188270 106..850 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.6250556-UTR-H-elongata_contig188270:102..1051622930076.6250556-UTR-H-elongata_contig188270:102..105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188270 103..105 +
1691679271.6840186-UTR-H-elongata_contig188270:102..1051691679271.6840186-UTR-H-elongata_contig188270:102..105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188270 103..105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.640925-CDS-H-elongata_contig188270:105..1831622930076.640925-CDS-H-elongata_contig188270:105..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188270 106..183 +
1691679271.6992054-CDS-H-elongata_contig188270:105..1831691679271.6992054-CDS-H-elongata_contig188270:105..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188270 106..183 +
1622930076.656328-CDS-H-elongata_contig188270:688..8501622930076.656328-CDS-H-elongata_contig188270:688..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188270 689..850 +
1691679271.7129793-CDS-H-elongata_contig188270:688..8501691679271.7129793-CDS-H-elongata_contig188270:688..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188270 689..850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188270.5148.1

>prot_H-elongata_contig188270.5148.1 ID=prot_H-elongata_contig188270.5148.1|Name=mRNA_H-elongata_contig188270.5148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRT
MDILRRHCMGDEPVRFQIISEQAHNFKNR*
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mRNA from alignment at H-elongata_contig188270:103..850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188270.5148.1 ID=mRNA_H-elongata_contig188270.5148.1|Name=mRNA_H-elongata_contig188270.5148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig188270:103..850+ (Himanthalia elongata Himel1 dioecious)
TACATGGAGCGAGATCCTGTCAGGGGCCAGGATTCCTTCGCTGCCTTTGA GGAGGTCCTCCTCCTGGCGAAGCAAAGAAAGGTTGGCGGTCCCGAAAAAA AATGCCGTTGATAGTATGTTAGAAACCCTCATCACTCCGTTTCCGCTTTC GCTAAATCTAGGGCATAGCTGACAGGTTCTTCACAGTGCGTCAACGCGTT GTTTTGGGAAATATACTAGTTTTAGTGTCACGTCTGTCAAGGGGTTGAAC TTTTGTCAACCGACAACTTTAATATAGGATAATGGAATATTTTTGGTACC TAGCAAGCCCCCTCTCCTTCCCCCTATGCCTGTATCCCGCGAAGGAACCT CCCCCCCCCACACATTTTCTCTCTACAAAACGTTTCCAATATTATATAAT TTTCTTGGTGATTTTCCATGTGTGGGATCATATATGACGATTTTGTGCTC AAAGGTAGTAATGTACACATTCGAACCTGACGATAGTTGGTCCCCTGGAC TGCATCCTACGGTGCTAAGAAGGTGTGGATGTTTGGAGGGTTTCAATGAG TTCATTAAAAAACAAAACAAACAAAAAAACACACAGGTGGATTTCGTGCT CCTTGGAGGGGACCTGTTCCACGAAAACAAGCCATCGAGGCGCACGATGT ACCGTACCATGGACATCCTGCGCCGCCATTGCATGGGAGACGAGCCCGTT CGCTTCCAGATCATTAGCGAGCAAGCGCACAACTTTAAAAACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig188270:103..850+

>mRNA_H-elongata_contig188270.5148.1 ID=mRNA_H-elongata_contig188270.5148.1|Name=mRNA_H-elongata_contig188270.5148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig188270:103..850+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCGAGATCCTGTCAGGGGCCAGGATTCCTTCGCTGCCTTTGAGGA
GGTCCTCCTCCTGGCGAAGCAAAGAAAGATGGAGCGAGATCCTGTCAGGG
GCCAGGATTCCTTCGCTGCCTTTGAGGAGGTCCTCCTCCTGGCGAAGCAA
AGAAAGGTGGATTTCGTGCTCCTTGGAGGGGACCTGTTCCACGAAAACAA
GCCATCGAGGCGCACGATGTACCGTACCATGGACATCCTGCGCCGCCATT
GCATGGGAGACGAGCCCGTTCGCTTCCAGATCATTAGCGAGCAAGCGCAC
AACTTTAAAAACAGGTGAGTGGATTTCGTGCTCCTTGGAGGGGACCTGTT
CCACGAAAACAAGCCATCGAGGCGCACGATGTACCGTACCATGGACATCC
TGCGCCGCCATTGCATGGGAGACGAGCCCGTTCGCTTCCAGATCATTAGC
GAGCAAGCGCACAACTTTAAAAACAGGTGA
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