mRNA_H-elongata_contig188270.5148.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: B7G2N6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2N6_PHATC) HSP 1 Score: 124 bits (312), Expect = 1.070e-31 Identity = 55/79 (69.62%), Postives = 68/79 (86.08%), Query Frame = 1
Query: 1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
Y E+DPVRG DSFAAFEEVL LAKQ + D VL+ GDLFH+N+PSRRT+Y TM+I+RR+CMG +PVR QI+S+QA NF+N
Sbjct: 44 YAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRN 122
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: B7G2N5_PHATC (Double-strand break repair protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2N5_PHATC) HSP 1 Score: 124 bits (312), Expect = 2.050e-31 Identity = 55/79 (69.62%), Postives = 68/79 (86.08%), Query Frame = 1
Query: 1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
Y E+DPVRG DSFAAFEEVL LAKQ + D VL+ GDLFH+N+PSRRT+Y TM+I+RR+CMG +PVR QI+S+QA NF+N
Sbjct: 44 YAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRN 122
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A7S4MXX5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXX5_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.070e-31 Identity = 54/78 (69.23%), Postives = 69/78 (88.46%), Query Frame = 1
Query: 1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFK 234
Y ERDP+RG DSFAAFEEVL LAK+ K D +LL GDLFH+NKPSRRT+++TM+I+RR+CMG +PV+FQI+S+QA NF+
Sbjct: 47 YAERDPIRGLDSFAAFEEVLALAKRHKCDMLLLAGDLFHDNKPSRRTLHKTMEIIRRYCMGPQPVQFQIVSDQAENFR 124
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A2P4Y1D3_9STRA (DNA repair protein (Mre11) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y1D3_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.070e-31 Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1
Query: 1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
Y E+DPVRG DSF +F E+L LA++ +VD +LLGGDLFH+NKPSRRTMY TM +LR HCMGD V FQ++S+Q+ NF N
Sbjct: 27 YAEKDPVRGNDSFRSFREILQLAQRERVDLLLLGGDLFHDNKPSRRTMYETMRLLRNHCMGDGAVNFQVVSDQSVNFPN 105
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: UPI001C4E8808 (double-strand break repair protein MRE11-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4E8808) HSP 1 Score: 116 bits (290), Expect = 5.940e-31 Identity = 50/79 (63.29%), Postives = 66/79 (83.54%), Query Frame = 1
Query: 1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
YME+D VR DSF AFEE+ +A+Q++VDFVLLGGDLFHENKPSR T+ +T++ILRR+C+ D PV+FQ++S+Q NF N
Sbjct: 25 YMEKDEVRRHDSFQAFEEICSIAEQKQVDFVLLGGDLFHENKPSRTTLVKTIEILRRYCLNDRPVQFQVVSDQTMNFAN 103
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A1Y2ED83_9FUNG (Metallo-dependent phosphatase n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2ED83_9FUNG) HSP 1 Score: 114 bits (285), Expect = 6.660e-31 Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNF 231
YMERDP+R DSF FEE+LL AKQ VD +LLGGDLFH+NKPSR+T+Y T+ +LR+HCMGD+P + + +S+Q NF
Sbjct: 26 YMERDPLRSNDSFQTFEEILLYAKQYNVDMMLLGGDLFHDNKPSRKTLYNTIALLRKHCMGDKPCQLEFLSDQKRNF 102
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE) HSP 1 Score: 122 bits (306), Expect = 1.340e-30 Identity = 56/62 (90.32%), Postives = 61/62 (98.39%), Query Frame = 1
Query: 55 VLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKNR 240
+LLLAK+RKVDFVLLGGDLFHENKPSRRT+Y+TMDILRRHCMGDEPV FQIISEQAHNFK+R
Sbjct: 1 MLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKDR 62
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A482RUZ6_9ARCH (Metallophos domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUZ6_9ARCH) HSP 1 Score: 112 bits (280), Expect = 1.910e-30 Identity = 48/78 (61.54%), Postives = 64/78 (82.05%), Query Frame = 1
Query: 1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFK 234
Y E+DPVR QDSFAAFEEVL AK+ KVDF+LL GD+FHENKPSRRTM+ TM++LR +C ++P+ ++++EQ+ FK
Sbjct: 20 YAEKDPVRCQDSFAAFEEVLRTAKENKVDFILLAGDMFHENKPSRRTMHNTMELLRMYCFSEDPIYLEVLNEQSEIFK 97
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A7S2UFV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFV9_9STRA) HSP 1 Score: 121 bits (303), Expect = 3.110e-30 Identity = 53/79 (67.09%), Postives = 68/79 (86.08%), Query Frame = 1
Query: 1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
Y E+DP+RG DSFAA EEVL LA++ K D VLL GDLFH+NKPSRRT+++TM+ILRR+CMG PV+FQI+S+QA NF++
Sbjct: 90 YCEKDPIRGSDSFAALEEVLSLARRHKCDMVLLAGDLFHDNKPSRRTLHKTMEILRRYCMGPNPVQFQIVSDQAANFRS 168
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Match: A0A1Y1U9Y7_9FUNG (Metallo-dependent phosphatase (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1U9Y7_9FUNG) HSP 1 Score: 112 bits (280), Expect = 3.510e-30 Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 1 YMERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTMDILRRHCMGDEPVRFQIISEQAHNFKN 237
YMERDP+R DSF FEE+LL AK+ VD +LLGGDLFH+NKPSR+T+Y T+ +LR+HCMGD+P + + +S+Q NF +
Sbjct: 27 YMERDPLRSNDSFQTFEEILLYAKKYNVDMMLLGGDLFHDNKPSRKTLYNTIALLRQHCMGDKPCQLEFLSDQKKNFSS 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188270.5148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig188270.5148.1 >prot_H-elongata_contig188270.5148.1 ID=prot_H-elongata_contig188270.5148.1|Name=mRNA_H-elongata_contig188270.5148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp MERDPVRGQDSFAAFEEVLLLAKQRKVDFVLLGGDLFHENKPSRRTMYRTback to top mRNA from alignment at H-elongata_contig188270:103..850+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig188270.5148.1 ID=mRNA_H-elongata_contig188270.5148.1|Name=mRNA_H-elongata_contig188270.5148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig188270:103..850+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig188270:103..850+ >mRNA_H-elongata_contig188270.5148.1 ID=mRNA_H-elongata_contig188270.5148.1|Name=mRNA_H-elongata_contig188270.5148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig188270:103..850+ (Himanthalia elongata Himel1 dioecious)back to top |