mRNA_H-elongata_contig187387.5113.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187387.5113.1
Unique NamemRNA_H-elongata_contig187387.5113.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: D7FIT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIT2_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.020e-30
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1
Query:   16 QLAEAAALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVTNASVCEEYQEQMSQLEEILAAGP 237
            ++ +AAAL+ATK+FGATS EARLAWD YEEVAAADN+IATRA LDEDCDVTN +VCEEYQ+QM +LEEILAAGP
Sbjct:   50 EVPKAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVTNENVCEEYQDQMKELEEILAAGP 123          
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A835Z6A4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6A4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.490e-15
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   22 AEAAALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVTNASVCEEYQEQMSQLEEILAAG 234
            AE AAL A KK+GA S EA  AWDEYEE+AA+DN+ A R GLDE CD   +  C +++ QM++L+ I+  G
Sbjct:   10 AEEAALAAVKKYGAKSPEAANAWDEYEEIAASDNTAAFRPGLDEGCDTEASQECSDFEAQMAELQAIIEKG 80          
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A6V2QHI9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QHI9_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 5.180e-10
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   22 AEAAALEATKKFGATSKEARLAWDEYEEV-AAADNSIATRAGLDEDCDVTNAS-VCEEYQEQMSQLEEILAAG 234
            AEA ALEATKKFGATS EARLAW+  EE+ AAA  + A +  LD +CDV++   VC+E+   M +L E+ A G
Sbjct:   45 AEAKALEATKKFGATSPEARLAWEAVEEMNAAARPANAMKKNLDVECDVSDGGEVCKEFNMHMERLAELTAEG 117          
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A448YV90_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV90_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.420e-10
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1
Query:   13 AQLAEAAALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVTNASV-CEEYQEQMSQLEEILAA 231
            A +AEA AL  + K+GATSKEARLAW+  EE+ A+DNS+A+   L+++CDV   S  C EY   + +L+E+L A
Sbjct:   41 ALVAEALAL--SNKYGATSKEARLAWEAVEEINASDNSVASMGNLNDECDVEVVSQDCLEYNAALEELQELLQA 112          
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: B7FTL9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTL9_PHATC)

HSP 1 Score: 57.4 bits (137), Expect = 8.070e-8
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   31 AALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVTNASV---CEEYQEQMSQLEEILA 228
            AAL+A+K++GATS EAR+AWD  EE+ A D+S AT+  L ++CD+    V   C EY  ++ +L ++LA
Sbjct:  147 AALQASKQYGATSPEARVAWDAVEEMRANDDSPATQGSLADECDIDEDKVSAACLEYGSKIEELNKLLA 215          
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A6U4HQZ8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HQZ8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.330e-7
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   28 AAALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAG----LDEDCDVTNASVCEEYQEQMSQLEEIL 225
            A AL+A+KKFGATS EAR AWD  EE+ AA+   A+       L E C +  + +CE+YQ+Q+ +L  IL
Sbjct:   56 AEALDASKKFGATSSEARTAWDIVEEMRAAEADQASNPAIVPNLAELCSLEESELCEQYQQQIEELNAIL 125          
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A1Z5JBS1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBS1_FISSO)

HSP 1 Score: 55.1 bits (131), Expect = 3.700e-7
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   31 AALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVT--NASVCEEYQEQMSQLEEIL 225
            AA++A+K +G TS EAR+AW+  E++AA+DNS A++  LDE+CD    N  +C EY  +  +L E +
Sbjct:   45 AAVKASKTYGPTSPEARVAWEVVEDIAASDNSAASKGTLDEECDWMDENNRLCMEYDTKKEKLAEAI 111          
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A7S2HHM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HHM1_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.130e-5
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   31 AALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVTNASVCEEYQEQMSQLEEIL 225
            AALEA+KK+G TSKEAR+AWD  EE+ A+DNS A + G       ++A   +EY  ++S+L  +L
Sbjct:   57 AALEASKKYGPTSKEARVAWDIVEEMDASDNSNAYKGGEGS----SSAEDQKEYNAKISELAALL 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FIT2_ECTSI1.020e-3079.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z6A4_9STRA3.490e-1553.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V2QHI9_HETAK5.180e-1054.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A448YV90_9STRA8.420e-1050.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B7FTL9_PHATC8.070e-846.38Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6U4HQZ8_9STRA2.330e-747.14Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1Z5JBS1_FISSO3.700e-744.78Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2HHM1_9STRA5.130e-547.69Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187387contigH-elongata_contig187387:901..1137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003010.1
Exons1
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.0066538-CDS-H-elongata_contig187387:900..11371622930071.0066538-CDS-H-elongata_contig187387:900..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187387 901..1137 +
1691679269.7656748-CDS-H-elongata_contig187387:900..11371691679269.7656748-CDS-H-elongata_contig187387:900..1137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187387 901..1137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187387.5113.1prot_H-elongata_contig187387.5113.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187387 901..1137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187387.5113.1

>prot_H-elongata_contig187387.5113.1 ID=prot_H-elongata_contig187387.5113.1|Name=mRNA_H-elongata_contig187387.5113.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MLNFAQLAEAAALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLD
EDCDVTNASVCEEYQEQMSQLEEILAAGP
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mRNA from alignment at H-elongata_contig187387:901..1137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187387.5113.1 ID=mRNA_H-elongata_contig187387.5113.1|Name=mRNA_H-elongata_contig187387.5113.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig187387:901..1137+ (Himanthalia elongata Himel1 dioecious)
ATGTTAAATTTCGCGCAGCTGGCGGAGGCGGCGGCTCTAGAGGCTACCAA AAAGTTCGGCGCGACCTCGAAAGAAGCAAGGCTGGCGTGGGACGAATACG AAGAGGTCGCGGCGGCGGACAACTCCATCGCCACCCGGGCCGGCCTCGAT GAGGACTGTGACGTAACAAACGCCTCGGTATGTGAGGAGTACCAGGAGCA GATGTCGCAGCTTGAGGAGATCCTCGCCGCGGGACCG
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Coding sequence (CDS) from alignment at H-elongata_contig187387:901..1137+

>mRNA_H-elongata_contig187387.5113.1 ID=mRNA_H-elongata_contig187387.5113.1|Name=mRNA_H-elongata_contig187387.5113.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig187387:901..1137+ (Himanthalia elongata Himel1 dioecious)
ATGTTAAATTTCGCGCAGCTGGCGGAGGCGGCGGCTCTAGAGGCTACCAA
AAAGTTCGGCGCGACCTCGAAAGAAGCAAGGCTGGCGTGGGACGAATACG
AAGAGGTCGCGGCGGCGGACAACTCCATCGCCACCCGGGCCGGCCTCGAT
GAGGACTGTGACGTAACAAACGCCTCGGTATGTGAGGAGTACCAGGAGCA
GATGTCGCAGCTTGAGGAGATCCTCGCCGCGGGACCGATGTTAAATTTCG
CGCAGCTGGCGGAGGCGGCGGCTCTAGAGGCTACCAAAAAGTTCGGCGCG
ACCTCGAAAGAAGCAAGGCTGGCGTGGGACGAATACGAAGAGGTCGCGGC
GGCGGACAACTCCATCGCCACCCGGGCCGGCCTCGATGAGGACTGTGACG
TAACAAACGCCTCGGTATGTGAGGAGTACCAGGAGCAGATGTCGCAGCTT
GAGGAGATCCTCGCCGCGGGACCG
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