mRNA_H-elongata_contig187387.5113.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: D7FIT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIT2_ECTSI) HSP 1 Score: 114 bits (285), Expect = 1.020e-30 Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1
Query: 16 QLAEAAALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVTNASVCEEYQEQMSQLEEILAAGP 237
++ +AAAL+ATK+FGATS EARLAWD YEEVAAADN+IATRA LDEDCDVTN +VCEEYQ+QM +LEEILAAGP
Sbjct: 50 EVPKAAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDVTNENVCEEYQDQMKELEEILAAGP 123
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A835Z6A4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6A4_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.490e-15 Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 22 AEAAALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVTNASVCEEYQEQMSQLEEILAAG 234
AE AAL A KK+GA S EA AWDEYEE+AA+DN+ A R GLDE CD + C +++ QM++L+ I+ G
Sbjct: 10 AEEAALAAVKKYGAKSPEAANAWDEYEEIAASDNTAAFRPGLDEGCDTEASQECSDFEAQMAELQAIIEKG 80
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A6V2QHI9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QHI9_HETAK) HSP 1 Score: 63.2 bits (152), Expect = 5.180e-10 Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 22 AEAAALEATKKFGATSKEARLAWDEYEEV-AAADNSIATRAGLDEDCDVTNAS-VCEEYQEQMSQLEEILAAG 234
AEA ALEATKKFGATS EARLAW+ EE+ AAA + A + LD +CDV++ VC+E+ M +L E+ A G
Sbjct: 45 AEAKALEATKKFGATSPEARLAWEAVEEMNAAARPANAMKKNLDVECDVSDGGEVCKEFNMHMERLAELTAEG 117
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A448YV90_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV90_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 8.420e-10 Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 13 AQLAEAAALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVTNASV-CEEYQEQMSQLEEILAA 231
A +AEA AL + K+GATSKEARLAW+ EE+ A+DNS+A+ L+++CDV S C EY + +L+E+L A
Sbjct: 41 ALVAEALAL--SNKYGATSKEARLAWEAVEEINASDNSVASMGNLNDECDVEVVSQDCLEYNAALEELQELLQA 112
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: B7FTL9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTL9_PHATC) HSP 1 Score: 57.4 bits (137), Expect = 8.070e-8 Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 31 AALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVTNASV---CEEYQEQMSQLEEILA 228
AAL+A+K++GATS EAR+AWD EE+ A D+S AT+ L ++CD+ V C EY ++ +L ++LA
Sbjct: 147 AALQASKQYGATSPEARVAWDAVEEMRANDDSPATQGSLADECDIDEDKVSAACLEYGSKIEELNKLLA 215
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A6U4HQZ8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HQZ8_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 2.330e-7 Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 28 AAALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAG----LDEDCDVTNASVCEEYQEQMSQLEEIL 225
A AL+A+KKFGATS EAR AWD EE+ AA+ A+ L E C + + +CE+YQ+Q+ +L IL
Sbjct: 56 AEALDASKKFGATSSEARTAWDIVEEMRAAEADQASNPAIVPNLAELCSLEESELCEQYQQQIEELNAIL 125
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A1Z5JBS1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBS1_FISSO) HSP 1 Score: 55.1 bits (131), Expect = 3.700e-7 Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 31 AALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVT--NASVCEEYQEQMSQLEEIL 225
AA++A+K +G TS EAR+AW+ E++AA+DNS A++ LDE+CD N +C EY + +L E +
Sbjct: 45 AAVKASKTYGPTSPEARVAWEVVEDIAASDNSAASKGTLDEECDWMDENNRLCMEYDTKKEKLAEAI 111
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Match: A0A7S2HHM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HHM1_9STRA) HSP 1 Score: 48.9 bits (115), Expect = 5.130e-5 Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 31 AALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDEDCDVTNASVCEEYQEQMSQLEEIL 225
AALEA+KK+G TSKEAR+AWD EE+ A+DNS A + G ++A +EY ++S+L +L
Sbjct: 57 AALEASKKYGPTSKEARVAWDIVEEMDASDNSNAYKGGEGS----SSAEDQKEYNAKISELAALL 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187387.5113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig187387.5113.1 >prot_H-elongata_contig187387.5113.1 ID=prot_H-elongata_contig187387.5113.1|Name=mRNA_H-elongata_contig187387.5113.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp MLNFAQLAEAAALEATKKFGATSKEARLAWDEYEEVAAADNSIATRAGLDback to top mRNA from alignment at H-elongata_contig187387:901..1137+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig187387.5113.1 ID=mRNA_H-elongata_contig187387.5113.1|Name=mRNA_H-elongata_contig187387.5113.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig187387:901..1137+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig187387:901..1137+ >mRNA_H-elongata_contig187387.5113.1 ID=mRNA_H-elongata_contig187387.5113.1|Name=mRNA_H-elongata_contig187387.5113.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig187387:901..1137+ (Himanthalia elongata Himel1 dioecious)back to top |