mRNA_H-elongata_contig18692.5090.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Match: A0A6H5L2L5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2L5_9PHAE) HSP 1 Score: 356 bits (914), Expect = 1.180e-113 Identity = 172/197 (87.31%), Postives = 187/197 (94.92%), Query Frame = 1
Query: 325 KKPRKPLLPVSLSKALVAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVESCKSGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRIMSNTVRSSPSDR 915
K+P+ PLLP +LSKAL+AGVFVLGIGTGVTVDSAINT+P+DLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHV+QADTKPGCVLR +NVVEVLQ KRGLLT ++VE CK GMNTWG+VGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPR+MS TV++ +DR
Sbjct: 111 KRPKVPLLPTTLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVEKCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQTVVTDR 307
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Match: A0A836CMQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ9_9STRA) HSP 1 Score: 271 bits (693), Expect = 3.670e-81 Identity = 139/200 (69.50%), Postives = 158/200 (79.00%), Query Frame = 1
Query: 319 ERKKPRKPLLPVSLSKALVAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVESCKSGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAA-----AAKKSAGSEPANGPRIMSNTVRSS 903
ER++ + V + KAL+AG+FVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNP ICQTYGSSAMVVD+RVFVTFNPFS++V QAD KPGCVLR +N V+VL+ +R L+ EVE+CK GMNTW FVGDLN PQLSCVYQSDDAQNEF+S+PK GLGEDVYDDDRAA AA+ A S GP+ V S
Sbjct: 100 ERRRDKGFFNSVKIPKALLAGIFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPGICQTYGSSAMVVDERVFVTFNPFSIYVAQADVKPGCVLRQSNFVQVLK-RRNLINDAEVETCKGGMNTWAFVGDLNGKPQLSCVYQSDDAQNEFVSDPKIGLGEDVYDDDRAAEQAARAARAVAASATKPGPQAQGMQVEGS 298
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Match: A0A7S2UF23_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF23_9STRA) HSP 1 Score: 258 bits (659), Expect = 4.000e-76 Identity = 133/194 (68.56%), Postives = 154/194 (79.38%), Query Frame = 1
Query: 262 DDLFYASDGLADEGSPVFKERKKPRKPLLPVSLSKALVAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVESCKSGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKK 843
DDL DGL D SP F R R LP S+SK+L+AG+FVLGIGTGVTVDSAINTN +DLASRDAIDRNAPNP +C TYG+SAM DQRVFV+FNPF+++V QAD KP CVLRPAN+V +L+E R ++ EV SCK MNTW +VGDL+D PQLSCVYQS+DAQNEFLSNPK G+GEDV+DDDRA A K
Sbjct: 94 DDLGEGKDGL-DVPSP-FGRRSGLR---LPDSVSKSLLAGIFVLGIGTGVTVDSAINTNERDLASRDAIDRNAPNPELCSTYGASAMAFDQRVFVSFNPFAVYVAQADVKPACVLRPANIVPILRE-RNMINDAEVRSCKKNMNTWAYVGDLDDMPQLSCVYQSEDAQNEFLSNPKLGIGEDVWDDDRAKATGK 281
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Match: A0A7R9WGK2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGK2_9STRA) HSP 1 Score: 251 bits (641), Expect = 6.780e-75 Identity = 119/168 (70.83%), Postives = 145/168 (86.31%), Query Frame = 1
Query: 346 LPVSLSKALVAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVESCKSGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSA 849
LP S+SKAL+AG+FVLGIGTGVT++S INT+PKDLASRDAIDRNAPNP +C YG+SAM DQRVFV+FNPF+++V QAD KP CVLR +NVV+VL+E++ L+ +EV +CK +NTW FVGDL++ PQLSCVYQSDDAQNEFLSNPK G+GEDVYDDDRA+ +K A
Sbjct: 16 LPESVSKALLAGIFVLGIGTGVTIESQINTSPKDLASRDAIDRNAPNPTLCAQYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRQSNVVQVLRERK-LINDNEVRTCKQKVNTWAFVGDLDNMPQLSCVYQSDDAQNEFLSNPKLGIGEDVYDDDRASLERKRA 182
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Match: A0A7S4WJP8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WJP8_9STRA) HSP 1 Score: 255 bits (651), Expect = 6.790e-75 Identity = 122/168 (72.62%), Postives = 140/168 (83.33%), Query Frame = 1
Query: 346 LPVSLSKALVAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVESCKSGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSA 849
LP S+SKAL+AGVFVLGIGTGVT+DS INTNPKDLASRDA+DRNAPNP +C TYG+ AM DQRVFV+FNPF+++V QAD KP CVLRPANVV +L+EK L+ EV SCK MNTW FVGDL D PQLSCVY+S+DAQNEFLSNPK G+GEDV+DDDR K +A
Sbjct: 123 LPASVSKALLAGVFVLGIGTGVTIDSQINTNPKDLASRDAVDRNAPNPELCTTYGAPAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPANVVPILREKN-LINDAEVRSCKQNMNTWAFVGDLQDMPQLSCVYKSEDAQNEFLSNPKLGIGEDVWDDDREKMMKNAA 289
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Match: A0A7S2SJB4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJB4_9STRA) HSP 1 Score: 252 bits (643), Expect = 1.490e-74 Identity = 123/166 (74.10%), Postives = 141/166 (84.94%), Query Frame = 1
Query: 343 LLPVSLSKALVAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVESCKSGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAK 840
L P L+ L+AGVFVLGIGTGVTVDSAINTNPKDLASRDAIDR APN +CQ YG+SAMV+DQR+FVTFNPF+++VTQADTKPGCVLR +NVV VLQ K GLL +DE+ +CK+ MNTWGFVG L+D PQLSCVY+S DAQNEFLSNPK GLGED+YD+ A K
Sbjct: 82 LFPKQLTNYLLAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRAAPNAELCQQYGASAMVMDQRLFVTFNPFNVYVTQADTKPGCVLRSSNVVPVLQGK-GLLDRDEIAACKNNMNTWGFVGTLDDRPQLSCVYKSQDAQNEFLSNPKIGLGEDIYDNGIPGAGK 246
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Match: A0A7S3PTW4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTW4_9STRA) HSP 1 Score: 254 bits (648), Expect = 2.030e-74 Identity = 125/177 (70.62%), Postives = 148/177 (83.62%), Query Frame = 1
Query: 346 LPVSLSKALVAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVESCKSGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAA--AAKKSAGSEPANG 870
LP S+S AL+AGVFVLGIGTGVTVDS INT+PKDLASRDA+D+ APNP +C TYG+SAM DQRVFV+FNPF+++V QAD KP CVLR +NVV VLQ+ RGL+ EV SCK MNTW FVGDLND+PQLSCVY+S+DAQNEFLS+PKYG+GEDV+DDDR A AA+K + + NG
Sbjct: 111 LPESVSTALLAGVFVLGIGTGVTVDSQINTSPKDLASRDAVDQAAPNPRLCSTYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRASNVVPVLQD-RGLINGKEVRSCKQNMNTWAFVGDLNDYPQLSCVYRSEDAQNEFLSDPKYGIGEDVWDDDRVAIEAARKGSVKKVKNG 286
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Match: A0A7S4I7G3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I7G3_9STRA) HSP 1 Score: 248 bits (632), Expect = 3.610e-72 Identity = 128/204 (62.75%), Postives = 154/204 (75.49%), Query Frame = 1
Query: 262 DDLFYASDGLADEGSPVFKERKKPRKPLLPVSLSKALVAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVESCKSGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAA-KKSAGSEPANG 870
DDL + G E F R R LP S+SKAL+AG+FVLGIG GV ++S +NT+PKDLASRDAID+NAPNP +C YG+SAM DQRVFV+FNPF+++V QAD KP CVLR +NVV+VL+E R L+ +EV SCK +NTW FVGDL+ PQ+SCVYQSDDAQNEFLSNPK G+GEDVYDDDRAA KKS G + +G
Sbjct: 92 DDLGTSDGGAGMEVPSPFGLRSGLR---LPDSVSKALLAGIFVLGIGAGVAIESQVNTSPKDLASRDAIDKNAPNPTLCAQYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRQSNVVQVLKE-RNLINDNEVRSCKQKVNTWAFVGDLDSMPQISCVYQSDDAQNEFLSNPKLGIGEDVYDDDRAALERKKSTGKQIKSG 291
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Match: K0SH28_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SH28_THAOC) HSP 1 Score: 245 bits (626), Expect = 1.520e-71 Identity = 118/167 (70.66%), Postives = 139/167 (83.23%), Query Frame = 1
Query: 346 LPVSLSKALVAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVESCKSGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKS 846
+P S+S AL+AGVFVLGIGTGVTVDS INTNPKDLASRDA+D+NAPNP +C TYG+SAM DQRVFV+FNPF+++V QAD KP CVLRP+NVV VL+E++ LL +EV CK MNTW FVGDLND PQLSCVY+S+DAQNEFL +PK G+GED DDD A+K S
Sbjct: 100 MPSSVSAALLAGVFVLGIGTGVTVDSQINTNPKDLASRDAVDKNAPNPTLCTTYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPSNVVPVLKERK-LLNDNEVRGCKMNMNTWAFVGDLNDQPQLSCVYKSEDAQNEFLEDPKRGIGEDYLDDDIDRASKVS 265
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Match: A0A7R9WZG6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WZG6_9STRA) HSP 1 Score: 241 bits (615), Expect = 1.050e-70 Identity = 114/161 (70.81%), Postives = 137/161 (85.09%), Query Frame = 1
Query: 346 LPVSLSKALVAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVESCKSGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRA 828
LP S+S+A++AGVFVLGIG GVT+DSAINTNP+DLASRDAID+ APN ++C YG+SAM DQRVFV+FNPF+++V QAD KP CVLRP+NVV +L++ R L+ DEV SCK+ MNTW FVG+L D PQLSCVY+S DAQNEFLSNPKYG+GED DDDRA
Sbjct: 47 LPASVSQAVLAGVFVLGIGLGVTIDSAINTNPRDLASRDAIDQAAPNSSLCANYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPSNVVPILKQ-RNLINDDEVRSCKANMNTWAFVGNLGDAPQLSCVYKSADAQNEFLSNPKYGIGEDYLDDDRA 206 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18692.5090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18692.5090.1 >prot_H-elongata_contig18692.5090.1 ID=prot_H-elongata_contig18692.5090.1|Name=mRNA_H-elongata_contig18692.5090.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp MVVDQRVFVTFNPFSLHVTQADTKPGCVLRPANVVEVLQEKRGLLTKDEVback to top mRNA from alignment at H-elongata_contig18692:2451..6147- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18692.5090.1 ID=mRNA_H-elongata_contig18692.5090.1|Name=mRNA_H-elongata_contig18692.5090.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3697bp|location=Sequence derived from alignment at H-elongata_contig18692:2451..6147- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18692:2451..6147- >mRNA_H-elongata_contig18692.5090.1 ID=mRNA_H-elongata_contig18692.5090.1|Name=mRNA_H-elongata_contig18692.5090.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig18692:2451..6147- (Himanthalia elongata Himel1 dioecious)back to top |