mRNA_H-elongata_contig186823.5087.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186823.5087.1
Unique NamemRNA_H-elongata_contig186823.5087.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A6A3JRZ2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JRZ2_9STRA)

HSP 1 Score: 192 bits (489), Expect = 7.370e-56
Identity = 116/292 (39.73%), Postives = 166/292 (56.85%), Query Frame = 1
Query:   22 LGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVF-RRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPS-AAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 891
            +G R VF +K D+ GR+ +YK RLVA+GF+Q  GI + E+ SP     SIR+VLS+ AA  +   QLD + A+L + +++  Y+E+P    ++R     L K++YGL  A   W K         GF+    D CV+ +R  +G + V   +YVDD++IA+ T  D  +    L + F +K+LG A + LG  I  D  AGTLK  Q +YI  V +RFG      V +  A G  LSK+ S  TDAE   MR   YR ++G L++  T TRP I+F A QL++F +NPG  H
Sbjct:   38 IGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYV--CLYVDDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVKRFGQENAKPVDNPCAAGLKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFMATQLSRFLENPGQQH 327          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A401GR04_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GR04_9APHY)

HSP 1 Score: 196 bits (497), Expect = 7.260e-53
Identity = 116/298 (38.93%), Postives = 171/298 (57.38%), Query Frame = 1
Query:    4 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQ-VGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAE-GKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 891
            P GK  +G+  VFK K + DG +E+YK RLVA+G+ Q  G  Y E  +PT  Q ++R++L++ AA   E   +D++ A+L  ++EEE Y++ PE +     + V  L KS+YGL      W KK    L   GF R Q D  ++  I  G V +++ V++DD+ +AS +K+  +  V++L S F ++DLG   + LG  I RD    T+   Q QYI  + ER+G++    V +  + G  LSK+ + QT  E E M ++ Y   VGALM+ A  TRP I FA   LA+FN NPGP H
Sbjct:  782 PPGKRAIGSGWVFKVKHNADGSVERYKGRLVAKGYSQRPGFDYTEVFAPTFRQPALRLILALAAAEDLELHSVDISSAFLNGDLEEEIYMQQPEGFHQGGPEMVCRLNKSLYGLKQGARQWNKKLHEVLTKMGFTRLQSDRSIYVYI-RGDVHIIVPVFIDDMTLASKSKKALDDTVKELKSYFKLRDLGSTQFLLGIDIKRDHAKHTISLSQRQYIVDMLERYGLSDCKSVSTPMDPGAELSKALAPQTQEEAEYMHKVPYLSAVGALMYLAITTRPDIMFAIGCLARFNANPGPAH 1078          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A401H1G1_9APHY (Integrase catalytic domain-containing protein n=7 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H1G1_9APHY)

HSP 1 Score: 195 bits (495), Expect = 1.540e-52
Identity = 116/298 (38.93%), Postives = 170/298 (57.05%), Query Frame = 1
Query:    4 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQ-VGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAE-GKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 891
            P GK  +G+  VFK K + DG +E+YK RLVA+G+ Q  G  Y E  +PT  Q ++R++L++ AA   E   +D++ A+L  ++EEE Y++ PE +     + V  L KS+YGL      W KK    L   GF R Q D  ++  I   + ++V  V++DD+ +AS +K+  +  V++L S F ++DLG   + LG  I RDR   T+   Q QYI  + ER+G++    V +    G  LSK+ + QT  E E M ++ Y   VGALM+ A  TRP I FA   LA+FN NPGP H
Sbjct:  922 PPGKRAIGSGWVFKVKHNADGSVERYKGRLVAKGYSQRPGFDYTEVFAPTFRQPALRLILALAAAEDLELHSVDISSAFLNGDLEEEIYMQQPEGFHQGGPEMVCRLNKSLYGLKQGARQWNKKLHEVLTKMGFTRLQSDRSIYVYIREDVRIIV-PVFIDDMTLASKSKKALDDTVKELKSYFKLRDLGSTQFLLGIDIKRDRAKHTISLSQRQYIVDMLERYGLSDCKSVSTPMNPGAELSKALAPQTQEEAEYMHKVPYLSAVGALMYLAITTRPDIMFAIGCLARFNANPGPAH 1218          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: W4VRP9_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=2 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRP9_9DIPT)

HSP 1 Score: 193 bits (490), Expect = 7.150e-52
Identity = 111/297 (37.37%), Postives = 172/297 (57.91%), Query Frame = 1
Query:    4 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAE-GKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 891
            P+G+  +  + VFK K D  G I ++K RLV +G+ Q KG+ Y E+ SP     S+R + ++ A L     Q+D   A+L+  ++EE ++E P  Y     +   LKK++YGL  A  +W +K    L+  GFQ+S  D CV+ +   G  ++++A+YVDDLLI S+ K       R L + F +K+LGEASY LG  I +  ++ TL  DQ  Y++ +  +FG+     V +     + LSK+D   T  E+ EM+ + YRE++G LM+ +  TRP ISFA ++L++FN NPG  H
Sbjct:  902 PRGRNPIKCKWVFKAKKDASGEIVRHKARLVIKGYSQRKGVDYIETYSPVVRYGSLRYLFALAAKLNLAVEQMDATTAFLQGELDEEIFMEQPPFYSKDSSKCCRLKKALYGLKQASRVWNQKLEETLKRLGFQQSDYDTCVYFK-SDGNRILIVAIYVDDLLIFSSCKNWIMDVKRQLNTHFKMKELGEASYCLGMKIIKTGDSITL--DQEHYVKEILTKFGMADCKPVTTPLNVSEKLSKADCPNTPEEIREMQNVPYREVIGCLMYLSQCTRPDISFAVNKLSQFNSNPGMKH 1195          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 191 bits (484), Expect = 4.590e-51
Identity = 120/303 (39.60%), Postives = 173/303 (57.10%), Query Frame = 1
Query:    1 RPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEEN--YVELPE--AYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVT--KISIVPSAAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 891
            RP    V+G++ V + K D  G I+KYK RLVAQGF Q+ GI Y E+ +P    +SIR++L++ A  GW+    D N AYL + ++++   Y+E P   A +D +  V  L+K++YGL   G  W +   I L   GF R++ D  VF  I     + V+A++VDD  I  ++     +  R +   +P+ DLGE S+ LG  + RDR A TL   QH YI ++  RF  T  K S +P       L+KS    + A++  MR+I YRE +G+LM+AA  TRP ISFA   LA+F+ NPG TH
Sbjct: 1000 RPSAVNVVGSKWVLRIKKDASGAIDKYKARLVAQGFTQIHGIDYFETFAPVAKLSSIRLILAIAARNGWDIQSFDFNSAYLNSTLDDDEVIYLEQPPDFAEKDPKNYVLRLRKALYGLKQGGRKWYEHLCIALADLGFNRAESDYGVFFAI-DANNITVLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDP-NLQLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTH 1300          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 2.800e-50
Identity = 106/296 (35.81%), Postives = 169/296 (57.09%), Query Frame = 1
Query:    4 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 891
            P+G+  + ++  F  K +K+G+I+ +K RLVA+GF Q+  + Y  SSSP P+ ASI+++L++    G      DV  AY  A ++EE +++LP    D   ++   ++++YGL  +G  W       L   GF++ + DPCVFR+++  +VV++I +YVDD+L+A + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V   S +P A  G  L          E EE  +   RE +G++MW +T +RP +SFA   +A+    P   H
Sbjct:  776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADLGPK------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1063          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A4S4K4Q2_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4Q2_9APHY)

HSP 1 Score: 188 bits (478), Expect = 2.910e-50
Identity = 124/303 (40.92%), Postives = 173/303 (57.10%), Query Frame = 1
Query:    1 RPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVE--EENYVELPEAY--RDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVT--KISIVPSAAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 891
            RP G  V+G++ V + K D  G I+KYK RLVAQGF QV G+ Y E+ +P    ASIR+VL++ A  GWE    D N AYL + ++  EE Y+E P  +  +D +  V  LKK++YGL   G  W +   I L   GF+R++ D  VF   + G  +V++A++VDD +I   +     Q  R L   + + DLG  S+ LG  +TRD  A TL   QH YI ++  RF  T  K S +P     + L KS    +  ++  MR+I YRE +G+LM+AA  TRP ISFA   LA+F+ NPG  H
Sbjct: 1000 RPLGVNVVGSKWVLRIKKDATGAIDKYKARLVAQGFTQVYGVDYFETFAPVAKIASIRLVLAIAARNGWEVQSFDFNSAYLNSVLDDDEEIYLEQPPQFSLKDPKLHVLRLKKALYGLKQGGRKWYEHLCIALADLGFKRAEADYGVFYAKV-GESLVLLAIHVDDCIITGNSSTLISQYKRQLGDKYSLTDLGPVSWLLGIKVTRDLEARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNIQFL-KSQCPTSLIDIARMRKIPYREAIGSLMYAAVGTRPDISFAVSTLAQFSHNPGWIH 1300          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 2.950e-50
Identity = 106/296 (35.81%), Postives = 169/296 (57.09%), Query Frame = 1
Query:    4 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 891
            P+G+  + ++  F  K +K+G+I+ +K RLVA+GF Q+  + Y  SSSP P+ ASI+++L++    G      DV  AY  A ++EE +++LP    D   ++   ++++YGL  +G  W       L   GF++ + DPCVFR+++  +VV++I +YVDD+L+A + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V   S +P A  G  L          E EE  +   RE +G++MW +T +RP +SFA   +A+    P   H
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADLGPK------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1442          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 2.970e-50
Identity = 106/296 (35.81%), Postives = 169/296 (57.09%), Query Frame = 1
Query:    4 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 891
            P+G+  + ++  F  K +K+G+I+ +K RLVA+GF Q+  + Y  SSSP P+ ASI+++L++    G      DV  AY  A ++EE +++LP    D   ++   ++++YGL  +G  W       L   GF++ + DPCVFR+++  +VV++I +YVDD+L+A + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V   S +P A  G  L          E EE  +   RE +G++MW +T +RP +SFA   +A+    P   H
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADLGPK------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1462          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 2.990e-50
Identity = 106/296 (35.81%), Postives = 169/296 (57.09%), Query Frame = 1
Query:    4 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 891
            P+G+  + ++  F  K +K+G+I+ +K RLVA+GF Q+  + Y  SSSP P+ ASI+++L++    G      DV  AY  A ++EE +++LP    D   ++   ++++YGL  +G  W       L   GF++ + DPCVFR+++  +VV++I +YVDD+L+A + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V   S +P A  G  L          E EE  +   RE +G++MW +T +RP +SFA   +A+    P   H
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADLGPK------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1605          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3JRZ2_9STRA7.370e-5639.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GR04_9APHY7.260e-5338.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A401H1G1_9APHY1.540e-5238.93Integrase catalytic domain-containing protein n=7 ... [more]
W4VRP9_9DIPT7.150e-5237.37Putative retrovirus-related pol polyprotein from t... [more]
A0A2R6PCF8_9APHY4.590e-5139.60Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A6H5KSG8_9PHAE2.800e-5035.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4K4Q2_9APHY2.910e-5040.92Uncharacterized protein n=2 Tax=Hermanssonia centr... [more]
A0A6H5JZQ8_9PHAE2.950e-5035.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.970e-5035.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.990e-5035.81Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186823contigH-elongata_contig186823:7..900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score189.1
Seed ortholog evalue2.9e-45
Seed eggNOG ortholog6334.EFV57947
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size894
Cds size894
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930068.4698775-CDS-H-elongata_contig186823:6..9001622930068.4698775-CDS-H-elongata_contig186823:6..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186823 7..900 +
1691679268.7703385-CDS-H-elongata_contig186823:6..9001691679268.7703385-CDS-H-elongata_contig186823:6..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186823 7..900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186823.5087.1prot_H-elongata_contig186823.5087.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186823 7..900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186823.5087.1

>prot_H-elongata_contig186823.5087.1 ID=prot_H-elongata_contig186823.5087.1|Name=mRNA_H-elongata_contig186823.5087.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
RPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSP
TPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDS
RKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHG
IVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHI
TRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAEGKALSKSDSSQTD
AEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH*
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mRNA from alignment at H-elongata_contig186823:7..900+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186823.5087.1 ID=mRNA_H-elongata_contig186823.5087.1|Name=mRNA_H-elongata_contig186823.5087.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=894bp|location=Sequence derived from alignment at H-elongata_contig186823:7..900+ (Himanthalia elongata Himel1 dioecious)
CGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAA AATCGACAAGGATGGAAGGATCGAGAAGTATAAATGCCGTCTCGTGGCGC AGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCG ACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCAGCTCT CGGCTGGGAGGCGTGGCAGCTGGACGTCAACATGGCCTACTTGGAGGCCA ATGTGGAGGAGGAGAACTACGTTGAGCTCCCGGAAGCATACCGTGACTCC AGGAAGCAAGTCGGCCTACTAAAGAAGTCAATGTACGGACTTGTCCACGC CGGGATGCTGTGGAAAAAAAAGTTCAGGATCGAGCTCGAGGCGAAGGGTT TCCAGAGATCTCAAGTCGACCCATGCGTGTTCCGGCGGATTCTCCACGGG ATAGTGGTAGTCGTCATCGCGGTCTATGTCGACGACCTGCTGATTGCTAG TGCGACGAAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCCTGTT TCCCCATCAAGGATCTAGGGGAGGCTTCATACTACCTGGGATGCCACATC ACGCGGGACCGGAACGCCGGGACACTAAAGTTCGACCAGCATCAGTACAT ACAGACTGTGGCGGAACGTTTTGGCGTGACGAAGATCAGCATCGTCCCGT CTGCGGCAGAAGGAAAAGCCCTTTCGAAATCAGACAGCTCGCAAACGGAC GCAGAGGTTGAAGAAATGCGCCAGATTTCCTACCGAGAAATCGTTGGGGC CCTAATGTGGGCAGCGACGATGACCAGGCCCAGTATTTCATTCGCTGCGC ACCAACTGGCAAAATTCAACGACAACCCGGGACCGACACACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig186823:7..900+

>mRNA_H-elongata_contig186823.5087.1 ID=mRNA_H-elongata_contig186823.5087.1|Name=mRNA_H-elongata_contig186823.5087.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at H-elongata_contig186823:7..900+ (Himanthalia elongata Himel1 dioecious)
CGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAA
AATCGACAAGGATGGAAGGATCGAGAAGTATAAATGCCGTCTCGTGGCGC
AGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCG
ACTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCAGCTCT
CGGCTGGGAGGCGTGGCAGCTGGACGTCAACATGGCCTACTTGGAGGCCA
ATGTGGAGGAGGAGAACTACGTTGAGCTCCCGGAAGCATACCGTGACTCC
AGGAAGCAAGTCGGCCTACTAAAGAAGTCAATGTACGGACTTGTCCACGC
CGGGATGCTGTGGAAAAAAAAGTTCAGGATCGAGCTCGAGGCGAAGGGTT
TCCAGAGATCTCAAGTCGACCCATGCGTGTTCCGGCGGATTCTCCACGGG
ATAGTGGTAGTCGTCATCGCGGTCTATGTCGACGACCTGCTGATTGCTAG
TGCGACGAAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCCTGTT
TCCCCATCAAGGATCTAGGGGAGGCTTCATACTACCTGGGATGCCACATC
ACGCGGGACCGGAACGCCGGGACACTAAAGTTCGACCAGCATCAGTACAT
ACAGACTGTGGCGGAACGTTTTGGCGTGACGAAGATCAGCATCGTCCCGT
CTGCGGCAGAAGGAAAAGCCCTTTCGAAATCAGACAGCTCGCAAACGGAC
GCAGAGGTTGAAGAAATGCGCCAGATTTCCTACCGAGAAATCGTTGGGGC
CCTAATGTGGGCAGCGACGATGACCAGGCCCAGTATTTCATTCGCTGCGC
ACCAACTGGCAAAATTCAACGACAACCCGGGACCGACACACTAGCGCCCA
AAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAAAATCGA
CAAGGATGGAAGGATCGAGAAGTATAAATGCCGTCTCGTGGCGCAGGGTT
TCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCGACTCCT
GCGCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCAGCTCTCGGCTG
GGAGGCGTGGCAGCTGGACGTCAACATGGCCTACTTGGAGGCCAATGTGG
AGGAGGAGAACTACGTTGAGCTCCCGGAAGCATACCGTGACTCCAGGAAG
CAAGTCGGCCTACTAAAGAAGTCAATGTACGGACTTGTCCACGCCGGGAT
GCTGTGGAAAAAAAAGTTCAGGATCGAGCTCGAGGCGAAGGGTTTCCAGA
GATCTCAAGTCGACCCATGCGTGTTCCGGCGGATTCTCCACGGGATAGTG
GTAGTCGTCATCGCGGTCTATGTCGACGACCTGCTGATTGCTAGTGCGAC
GAAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCA
TCAAGGATCTAGGGGAGGCTTCATACTACCTGGGATGCCACATCACGCGG
GACCGGAACGCCGGGACACTAAAGTTCGACCAGCATCAGTACATACAGAC
TGTGGCGGAACGTTTTGGCGTGACGAAGATCAGCATCGTCCCGTCTGCGG
CAGAAGGAAAAGCCCTTTCGAAATCAGACAGCTCGCAAACGGACGCAGAG
GTTGAAGAAATGCGCCAGATTTCCTACCGAGAAATCGTTGGGGCCCTAAT
GTGGGCAGCGACGATGACCAGGCCCAGTATTTCATTCGCTGCGCACCAAC
TGGCAAAATTCAACGACAACCCGGGACCGACACACTAG
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