prot_H-elongata_contig186823.5087.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig186823.5087.1
Unique Nameprot_H-elongata_contig186823.5087.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length298
Homology
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A6A3JRZ2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JRZ2_9STRA)

HSP 1 Score: 192 bits (489), Expect = 7.370e-56
Identity = 116/292 (39.73%), Postives = 166/292 (56.85%), Query Frame = 0
Query:    8 LGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVF-RRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPS-AAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 297
            +G R VF +K D+ GR+ +YK RLVA+GF+Q  GI + E+ SP     SIR+VLS+ AA  +   QLD + A+L + +++  Y+E+P    ++R     L K++YGL  A   W K         GF+    D CV+ +R  +G + V   +YVDD++IA+ T  D  +    L + F +K+LG A + LG  I  D  AGTLK  Q +YI  V +RFG      V +  A G  LSK+ S  TDAE   MR   YR ++G L++  T TRP I+F A QL++F +NPG  H
Sbjct:   38 IGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYV--CLYVDDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVKRFGQENAKPVDNPCAAGLKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFMATQLSRFLENPGQQH 327          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A401GR04_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GR04_9APHY)

HSP 1 Score: 196 bits (497), Expect = 7.260e-53
Identity = 116/298 (38.93%), Postives = 171/298 (57.38%), Query Frame = 0
Query:    2 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQ-VGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAE-GKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 297
            P GK  +G+  VFK K + DG +E+YK RLVA+G+ Q  G  Y E  +PT  Q ++R++L++ AA   E   +D++ A+L  ++EEE Y++ PE +     + V  L KS+YGL      W KK    L   GF R Q D  ++  I  G V +++ V++DD+ +AS +K+  +  V++L S F ++DLG   + LG  I RD    T+   Q QYI  + ER+G++    V +  + G  LSK+ + QT  E E M ++ Y   VGALM+ A  TRP I FA   LA+FN NPGP H
Sbjct:  782 PPGKRAIGSGWVFKVKHNADGSVERYKGRLVAKGYSQRPGFDYTEVFAPTFRQPALRLILALAAAEDLELHSVDISSAFLNGDLEEEIYMQQPEGFHQGGPEMVCRLNKSLYGLKQGARQWNKKLHEVLTKMGFTRLQSDRSIYVYI-RGDVHIIVPVFIDDMTLASKSKKALDDTVKELKSYFKLRDLGSTQFLLGIDIKRDHAKHTISLSQRQYIVDMLERYGLSDCKSVSTPMDPGAELSKALAPQTQEEAEYMHKVPYLSAVGALMYLAITTRPDIMFAIGCLARFNANPGPAH 1078          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: UPI001C91A683 (hypothetical protein n=1 Tax=Modestobacter lapidis TaxID=1608613 RepID=UPI001C91A683)

HSP 1 Score: 185 bits (469), Expect = 1.160e-52
Identity = 119/295 (40.34%), Postives = 171/295 (57.97%), Query Frame = 0
Query:    8 LGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAY--RDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDD-LLIASATKRDEEQAVRDLCSC-FPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAE-GKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 297
            +G + VFK+K D +G+I KYK RLVA+G+ Q++G+ Y E  SP     SIR VLS  AA   E  Q+DV  A+L  ++EEE Y++ PE +  R     V  L+KS+YGL  +  +W +KF    +  GF RS  D CV+ +   G + V++ +YVDD LLI ++TK    + V+DL +  F +KDLG A++ LG HI RDR    L   Q +YI+ + ++F +T    V +    G  LS   S Q + E E+M  I Y   VG+LM+A   TRP I+ A   L+++  NPG  H
Sbjct:    5 IGCKWVFKKKQDAEGKIGKYKARLVAKGYAQIEGVDYAEIFSPVAKLTSIRTVLSAAAAYDLEIEQMDVKTAFLHGDLEEEIYMKQPEGFVARGKENLVCKLEKSLYGLKQSPRMWYQKFDSYAQQIGFTRSHADHCVYVK-REGEMFVILTLYVDDMLLIGNSTKMI--RTVKDLLAKQFEMKDLGAANFILGMHIRRDRARRRLWLGQERYIEGILKKFNMTDCKPVGTPMSVGVKLSAEQSPQNEEEKEQMASIPYASAVGSLMYAMVCTRPDIAQAVGVLSRYMSNPGKEH 296          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A401H1G1_9APHY (Integrase catalytic domain-containing protein n=7 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H1G1_9APHY)

HSP 1 Score: 195 bits (495), Expect = 1.540e-52
Identity = 116/298 (38.93%), Postives = 170/298 (57.05%), Query Frame = 0
Query:    2 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQ-VGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAE-GKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 297
            P GK  +G+  VFK K + DG +E+YK RLVA+G+ Q  G  Y E  +PT  Q ++R++L++ AA   E   +D++ A+L  ++EEE Y++ PE +     + V  L KS+YGL      W KK    L   GF R Q D  ++  I   + ++V  V++DD+ +AS +K+  +  V++L S F ++DLG   + LG  I RDR   T+   Q QYI  + ER+G++    V +    G  LSK+ + QT  E E M ++ Y   VGALM+ A  TRP I FA   LA+FN NPGP H
Sbjct:  922 PPGKRAIGSGWVFKVKHNADGSVERYKGRLVAKGYSQRPGFDYTEVFAPTFRQPALRLILALAAAEDLELHSVDISSAFLNGDLEEEIYMQQPEGFHQGGPEMVCRLNKSLYGLKQGARQWNKKLHEVLTKMGFTRLQSDRSIYVYIREDVRIIV-PVFIDDMTLASKSKKALDDTVKELKSYFKLRDLGSTQFLLGIDIKRDRAKHTISLSQRQYIVDMLERYGLSDCKSVSTPMNPGAELSKALAPQTQEEAEYMHKVPYLSAVGALMYLAITTRPDIMFAIGCLARFNANPGPAH 1218          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: W4VRP9_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=2 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRP9_9DIPT)

HSP 1 Score: 193 bits (490), Expect = 7.150e-52
Identity = 111/297 (37.37%), Postives = 172/297 (57.91%), Query Frame = 0
Query:    2 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAE-GKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 297
            P+G+  +  + VFK K D  G I ++K RLV +G+ Q KG+ Y E+ SP     S+R + ++ A L     Q+D   A+L+  ++EE ++E P  Y     +   LKK++YGL  A  +W +K    L+  GFQ+S  D CV+ +   G  ++++A+YVDDLLI S+ K       R L + F +K+LGEASY LG  I +  ++ TL  DQ  Y++ +  +FG+     V +     + LSK+D   T  E+ EM+ + YRE++G LM+ +  TRP ISFA ++L++FN NPG  H
Sbjct:  902 PRGRNPIKCKWVFKAKKDASGEIVRHKARLVIKGYSQRKGVDYIETYSPVVRYGSLRYLFALAAKLNLAVEQMDATTAFLQGELDEEIFMEQPPFYSKDSSKCCRLKKALYGLKQASRVWNQKLEETLKRLGFQQSDYDTCVYFK-SDGNRILIVAIYVDDLLIFSSCKNWIMDVKRQLNTHFKMKELGEASYCLGMKIIKTGDSITL--DQEHYVKEILTKFGMADCKPVTTPLNVSEKLSKADCPNTPEEIREMQNVPYREVIGCLMYLSQCTRPDISFAVNKLSQFNSNPGMKH 1195          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A2K3LVH8_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LVH8_TRIPR)

HSP 1 Score: 187 bits (474), Expect = 4.490e-51
Identity = 114/301 (37.87%), Postives = 174/301 (57.81%), Query Frame = 0
Query:    2 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQ--VGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAA---EGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 297
            P G   +G + VFK K D +G+IE+YK RLVA+G+ Q +GI Y+E+ SP   + + R+V++++A    E  Q+DV  A+L   + E+ Y+  PE + ++ K+  V  L KS+YGL  A   W  KF   + + GF+ +  D C++ +   G   +++ +YVDD+L+AS+      +  + L S F +KDLG+AS  LG  I RDR+ G L   Q  YI+ + +RF +   S  P AA   +G  LS S+  Q D E  EM ++ Y   VG+LM+A   TRP I+FA + L ++  NPG  H
Sbjct:  275 PVGCKAVGCKWVFKTKRDPNGKIERYKARLVAKGYSQREGIDYKETFSPVSTKDAFRVVMALVAHFDLELHQMDVKTAFLNGELAEDVYMFQPEGFAEAGKEHLVCKLNKSIYGLKQASRQWYLKFDQVVTSFGFKENASDQCIYLK-TSGSNFIILVLYVDDILLASSCINLLNETRKMLSSHFDMKDLGDASVVLGIQIFRDRSRGVLGLSQKGYIEKILKRFNMHSCS--PCAAPILKGDKLSNSNCPQNDKETVEMEKVPYASAVGSLMYAQVCTRPDIAFAVNYLGRYLSNPGLGH 572          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 191 bits (484), Expect = 4.590e-51
Identity = 120/303 (39.60%), Postives = 173/303 (57.10%), Query Frame = 0
Query:    1 RPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEEN--YVELPE--AYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVT--KISIVPSAAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 297
            RP    V+G++ V + K D  G I+KYK RLVAQGF Q+ GI Y E+ +P    +SIR++L++ A  GW+    D N AYL + ++++   Y+E P   A +D +  V  L+K++YGL   G  W +   I L   GF R++ D  VF  I     + V+A++VDD  I  ++     +  R +   +P+ DLGE S+ LG  + RDR A TL   QH YI ++  RF  T  K S +P       L+KS    + A++  MR+I YRE +G+LM+AA  TRP ISFA   LA+F+ NPG TH
Sbjct: 1000 RPSAVNVVGSKWVLRIKKDASGAIDKYKARLVAQGFTQIHGIDYFETFAPVAKLSSIRLILAIAARNGWDIQSFDFNSAYLNSTLDDDEVIYLEQPPDFAEKDPKNYVLRLRKALYGLKQGGRKWYEHLCIALADLGFNRAESDYGVFFAI-DANNITVLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDP-NLQLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTH 1300          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 183 bits (465), Expect = 1.470e-50
Identity = 107/299 (35.79%), Postives = 171/299 (57.19%), Query Frame = 0
Query:    3 KGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRD--SRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGV--TKISIVPSAAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 297
            KG   +G + V+K+KI  DG++E YK RLVA+G+RQ +GI Y+E+ SP     SIR++L++ A   +E WQ+DV  A+L   ++EE Y+  PE +       +V  L++S+YGL  A   W  +F   +E   F + + +PCV+++I  G  ++ + +YVDD+L+        +     L   F +KDLGEA+Y LG  I RDR+   L   Q  YI T+ +R+ +  +K   +P    G +LS+ +  +T  E E M ++ Y   VGA+M+  T TRP +++A    +++  NPG  H
Sbjct:  132 KGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLP-VGMGVSLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEH 428          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 2.800e-50
Identity = 106/296 (35.81%), Postives = 169/296 (57.09%), Query Frame = 0
Query:    2 PKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 297
            P+G+  + ++  F  K +K+G+I+ +K RLVA+GF Q+  + Y  SSSP P+ ASI+++L++    G      DV  AY  A ++EE +++LP    D   ++   ++++YGL  +G  W       L   GF++ + DPCVFR+++  +VV++I +YVDD+L+A + + D E+ +  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V   S +P A  G  L          E EE  +   RE +G++MW +T +RP +SFA   +A+    P   H
Sbjct:  776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIP-ATPGADLGPK------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1063          
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Match: A0A4S4K4Q2_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4Q2_9APHY)

HSP 1 Score: 188 bits (478), Expect = 2.910e-50
Identity = 124/303 (40.92%), Postives = 173/303 (57.10%), Query Frame = 0
Query:    1 RPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVE--EENYVELPEAY--RDSRKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHGIVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQHQYIQTVAERFGVT--KISIVPSAAEGKALSKSDSSQTDAEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH 297
            RP G  V+G++ V + K D  G I+KYK RLVAQGF QV G+ Y E+ +P    ASIR+VL++ A  GWE    D N AYL + ++  EE Y+E P  +  +D +  V  LKK++YGL   G  W +   I L   GF+R++ D  VF   + G  +V++A++VDD +I   +     Q  R L   + + DLG  S+ LG  +TRD  A TL   QH YI ++  RF  T  K S +P     + L KS    +  ++  MR+I YRE +G+LM+AA  TRP ISFA   LA+F+ NPG  H
Sbjct: 1000 RPLGVNVVGSKWVLRIKKDATGAIDKYKARLVAQGFTQVYGVDYFETFAPVAKIASIRLVLAIAARNGWEVQSFDFNSAYLNSVLDDDEEIYLEQPPQFSLKDPKLHVLRLKKALYGLKQGGRKWYEHLCIALADLGFKRAEADYGVFYAKV-GESLVLLAIHVDDCIITGNSSTLISQYKRQLGDKYSLTDLGPVSWLLGIKVTRDLEARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNIQFL-KSQCPTSLIDIARMRKIPYREAIGSLMYAAVGTRPDISFAVSTLAQFSHNPGWIH 1300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186823.5087.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3JRZ2_9STRA7.370e-5639.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GR04_9APHY7.260e-5338.93Integrase catalytic domain-containing protein n=1 ... [more]
UPI001C91A6831.160e-5240.34hypothetical protein n=1 Tax=Modestobacter lapidis... [more]
A0A401H1G1_9APHY1.540e-5238.93Integrase catalytic domain-containing protein n=7 ... [more]
W4VRP9_9DIPT7.150e-5237.37Putative retrovirus-related pol polyprotein from t... [more]
A0A2K3LVH8_TRIPR4.490e-5137.87Putative retrotransposon Ty1-copia subclass protei... [more]
A0A2R6PCF8_9APHY4.590e-5139.60Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A2K3MAN7_TRIPR1.470e-5035.79Retrotransposon protein putative Ty1-copia subclas... [more]
A0A6H5KSG8_9PHAE2.800e-5035.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4K4Q2_9APHY2.910e-5040.92Uncharacterized protein n=2 Tax=Hermanssonia centr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..229
e-value: 7.4E-50
score: 169.8
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 2..215
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 17..216
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186823contigH-elongata_contig186823:7..900 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186823.5087.1mRNA_H-elongata_contig186823.5087.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig186823 7..900 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig186823.5087.1 ID=prot_H-elongata_contig186823.5087.1|Name=mRNA_H-elongata_contig186823.5087.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
RPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSP
TPAQASIRMVLSMIAALGWEAWQLDVNMAYLEANVEEENYVELPEAYRDS
RKQVGLLKKSMYGLVHAGMLWKKKFRIELEAKGFQRSQVDPCVFRRILHG
IVVVVIAVYVDDLLIASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHI
TRDRNAGTLKFDQHQYIQTVAERFGVTKISIVPSAAEGKALSKSDSSQTD
AEVEEMRQISYREIVGALMWAATMTRPSISFAAHQLAKFNDNPGPTH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like