mRNA_H-elongata_contig18574.5032.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18574.5032.1
Unique NamemRNA_H-elongata_contig18574.5032.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: D7G7N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N7_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 4.580e-128
Identity = 200/282 (70.92%), Postives = 229/282 (81.21%), Query Frame = 1
Query:    1 SMTSQATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDW-----VGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
            ++ S+ATRL GLLA+VWE LADPSAA+A +P VL+ PDCPA+A+ARGLQ LYEHLEVCQDACE+FG  VSIVPHP+GG+ GAP P+LVVQ V G         ++FGYDP+       IDRSLL DD+ + +G     GGDW     V V+  AL  +P SDEEV ELTK+WVQAVITDMGVCPFSVDASRAGLPVG VRYPVTRE TAE+IYR+YW EV+L+VSE +ERSLSTTLLITPEF+LNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQY+FR
Sbjct:   30 TVLSKATRLSGLLADVWETLADPSAAEAERPRVLMFPDCPAVAEARGLQNLYEHLEVCQDACEQFGTMVSIVPHPRGGRTGAPAPSLVVQVVPGAGG-----GDDFGYDPDXXXXXX-IDRSLLDDDEAEGEGA---AGGDWDEDGVVRVDAAALSVVPSSDEEVQELTKSWVQAVITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAESIYREYWREVELLVSETNERSLSTTLLITPEFSLNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYAFR 302          
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A6H5L2Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q2_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 3.440e-126
Identity = 199/282 (70.57%), Postives = 229/282 (81.21%), Query Frame = 1
Query:    1 SMTSQATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDW-----VGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
            ++ S+ATRL GLLA+VWE LADPSA +A +P VL+ PDCPA+A+ARGLQ LYEHLEVCQDACE+FG  VSIVPHP+GGKNGAP P+LVVQ V G         ++FGYDP+       IDRSLL DD+ + +G     GGDW     V V+  AL  +P SDEEV ELTK+WVQAVITDMGVCPFSVDASRAGLPVG +RYPVTRE TAE+IYR+YW EV+L+VSE +ERSLSTTLLITP+F+LNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQY+FR
Sbjct:   92 TVLSKATRLSGLLADVWETLADPSAVEAERPRVLMFPDCPAVAEARGLQNLYEHLEVCQDACEQFGTMVSIVPHPRGGKNGAPAPSLVVQVVPGAGG-----GDDFGYDPDXXXXXX-IDRSLLDDDEAEGEGA---AGGDWDEDGVVRVDAAALGVVPSSDEEVQELTKSWVQAVITDMGVCPFSVDASRAGLPVGQIRYPVTRETTAESIYREYWREVELLVSETNERSLSTTLLITPDFSLNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYAFR 364          
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A835ZCU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU6_9STRA)

HSP 1 Score: 227 bits (579), Expect = 2.570e-67
Identity = 128/279 (45.88%), Postives = 167/279 (59.86%), Query Frame = 1
Query:    7 TSQATRLPGLLAEVWEKLA----DPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
            TS+A  L   LA  W  +     DP  +Q     V+L+PDCPA+AD   LQ LY HLE CQD CE+FG EV + PHP    + A    L V   AG                        ID SLLGDD  D               +  AL S+PDSDEEV +++K W +A+I  MG+CPF+VDA+RAGLP+G + YPV++  TAE +YRDYW +V+ ++S  D R ++TTL+ITP F L N EAF+++ QTLT+PLE L LE+D+QLVFFHPQ++FR
Sbjct:   24 TSKAQTLASALAAAWTAICNVIEDPETSQ-----VVLLPDCPALADRITLQKLYNHLEQCQDCCEKFGAEVVLTPHPATSSSPAAFEFLSVTGKAGSREGLDDYQFXXXXXXXXX---XXIDTSLLGDDTED-------------YSQISALTSVPDSDEEVLQISKEWNEAIIAGMGICPFAVDANRAGLPIGGIHYPVSKSDTAEFVYRDYWNQVEYLLSA-DVREVATTLMITPRFGLANVEAFDILTQTLTEPLELLGLEEDVQLVFFHPQHTFR 280          
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A7S3XYD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYD6_HETAK)

HSP 1 Score: 190 bits (482), Expect = 2.200e-53
Identity = 116/283 (40.99%), Postives = 152/283 (53.71%), Query Frame = 1
Query:   10 SQATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQ-AVAGXXXXXXXX--------NEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
            S A  +P     +WE +          P  LL P+C  I D    + + EHLEV +D+C  FG ++ +  +P G     P P   V+  VAG                N  F  D  WDD DWDIDRSLLG++D           G     +R+ L +    DEE+   TK W + VI  MGVCPF+  A RAGLP+G V YP++R   +E IYRDYW +V L++ +   + LSTTLLITP F L+N E F++   +LTQPLE L +E  IQLVFFHP+Y FR
Sbjct:   71 SNAKNIPEAFHALWESIC------MGNPAALLFPNCAEIPDQATAEAMLEHLEVAKDSCTIFGTDIVVNLNPAG-----PCPTFEVKKVVAGGSYGGSSDGATSVGGFNFNFADDDAWDD-DWDIDRSLLGEED-----------GTAAQRKREQLAT----DEEILAATKEWNEQVICRMGVCPFATSAERAGLPLGRVHYPISRAERSEEIYRDYWAQVALLI-DSPPKELSTTLLITPNFGLHNVEGFDMFSNSLTQPLEPLGVERYIQLVFFHPEYCFR 325          
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A4D9D9D0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9D0_9STRA)

HSP 1 Score: 191 bits (486), Expect = 7.370e-53
Identity = 115/283 (40.64%), Postives = 160/283 (56.54%), Query Frame = 1
Query:   13 QATRLPGLLAEVWEKLADPSAAQANKPC---VLLVPDCPAIADARGLQGLYEHLEVCQDACERFG-REVSIVPHPKGGKNG--APVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSE----KDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
            Q   L  +LAEV++++     A+   P    +LL P    + D + ++   +HL++C++ CE  G  + +I  HP         PVPAL+++ +A          +EF  DP WDD D   D S L            +E G+    E++ L  +P+ D  V    + WV A+I D+GVCPF+V+A +AGLP G +RY + R  + E IYR YW EV LI ++    +DERSLSTTLLITP F L N E FE    TLTQPLEAL LED++QLVFFHP++ FR
Sbjct:  105 QHASLAEVLAEVYDQVLKAEKAEKGAPPPEHLLLFPQAEQLYDGQMMRQFGDHLDLCKECCEVMGVSQNTIAMHPSTTSPALQTPVPALLIKGIANA-------EDEFEDDPFWDDDDEGFDFSALY----------ANEDGETDAREQEKLYEVPEGDGPVISGMREWVDAIIADLGVCPFTVNAGKAGLPQGAIRYEINRSMSPEEIYRKYWQEVALISTDSAQAQDERSLSTTLLITPNFGLRNREFFETFSNTLTQPLEALGLEDEVQLVFFHPEWVFR 370          
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A7S2WW48_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW48_9STRA)

HSP 1 Score: 186 bits (471), Expect = 8.330e-52
Identity = 112/282 (39.72%), Postives = 152/282 (53.90%), Query Frame = 1
Query:   10 SQATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVP----HPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDE----GGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
            S A  L  + A VW K++D    Q      ++ P+C  ++    L  L +HLE+C+D CE FG E+   P     PK     +P P + ++               F  D +WDD DW++          +D+G         GG++   E D L ++P  D  + E++K+WV A+I DMGVCPF+  A R GLP+G V YPV R +T E +Y  YW EV L+ +  D+R LSTTLLITP F L N EAF     TLT PLE L LE  +QLVFFHPQ++FR
Sbjct:   70 SDARTLATVFAHVWSKISDSKLDQQ----FIVFPECTELSADGTLVRLMDHLELCKDVCESFGTEIQAFPLDPRAPKDHPAHSPAPGVALRRFG-------QQGHVFAPDDDWDD-DWEL---------PEDEGFPAPSSSAAGGEFSKAELDCLAAVPADDASLVEISKSWVGAMIADMGVCPFTTSAERGGLPLGTVHYPVCRSSTVEEVYAAYWKEVALLEAT-DQRELSTTLLITPNFGLTNTEAFIAFTDTLTTPLEGLGLETLMQLVFFHPQWTFR 329          
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: B7FZJ1_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZJ1_PHATC)

HSP 1 Score: 181 bits (460), Expect = 2.920e-49
Identity = 109/273 (39.93%), Postives = 146/273 (53.48%), Query Frame = 1
Query:   28 PGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNE-EFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSL----PDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
            P LLA VW+++A        +   ++ P        R L  L  HL+ C+D C+ FG   ++VP+ K GK       +V   V          +E EFGYDP WDDG  D D    G DD D              + +D   ++    PD DE++ ++TKAWV  ++TDMG+CPF+    +AGLP+G V Y V R    E +Y  YW EV + V +  E+ +STTLLI PEF  +N E FE    TLTQPL AL +ED +QLVFFHPQ+ FR
Sbjct:   90 PQLLAGVWDQIAHAGTMSKGETNTVIYPQIQDKFTPRYLNLLMGHLDFCKDVCDHFGISTALVPYQKDGK-------IVGFTVKSFRNSESKEDEYEFGYDPFWDDG-TDFDNLYAGVDDDD--------------MAKDPYPAIEVVVPDDDEDIIDITKAWVGKMMTDMGLCPFTAGPEQAGLPMGNVHYEVDRSTGVEEMYAKYWHEV-VRVEQNKEKDISTTLLIVPEFMRDNVELFESFSNTLTQPLTALDVEDLLQLVFFHPQWVFR 339          
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A7S0G9R2_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G9R2_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.650e-48
Identity = 108/270 (40.00%), Postives = 153/270 (56.67%), Query Frame = 1
Query:   34 LLAEVWEKLADPSAAQANKPCVLLVPDCPA-IADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGD--W-DIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
            LLA VW+ +   S  +  +   +L P   + + DA  +     HL+ C+D CE FG    ++P+  G   G P   L+   V           E+F YDP WDD D  W D+D   LG DD      D DE      +     +++P +D+E+ ++T+ WV  +++DMG+CPF+     +G+P+G V Y V R +  E +Y  YW EV + V +  E+ LSTTL+ITPEFALNNAE FE    TLTQPL++L +ED +QLVFFHPQ+SFR
Sbjct:  101 LLASVWDLIRSTSDMERGEERTILYPSMSSKLTDASWVSRFMNHLDTCKDVCEVFGISNVLIPYT-GFPLGGPFRPLLGFTVKSYANRGADQEEDFEYDPLWDDSDDYWGDLD---LGFDD------DEDEINSEAALPDIVGEAVPANDDEMIQVTRRWVDKMMSDMGICPFTSGPDMSGMPMGKVYYCVDRSSKVEDLYASYWKEV-VRVEQSTEKELSTTLMITPEFALNNAEMFECFSGTLTQPLQSLDVEDLLQLVFFHPQWSFR 359          
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A448ZRJ9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRJ9_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.730e-46
Identity = 110/272 (40.44%), Postives = 150/272 (55.15%), Query Frame = 1
Query:   37 LAEVWEKLADPSAAQANKPCVLLVPDC-PAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGD-WDIDRSLLGDDDTDDDGVDVD----EGGDWVGVER-DALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
            LA +W  +A  +     +    L PD    +A  R L  +  HL+ C+D C+ FG   ++VP  + GK    V    V++           N EF YDP WDD D WD +            G+D +    EGG    VE  D ++ +PD DEE+ +L+K WV  + +DMGVCPF+  A+ AGLP+G V Y   R ++ E +Y  YW EV + V ++ E  LSTTLLITPEF ++N E FE    TLTQPL AL +E+ IQLVFFHP ++FR
Sbjct:   89 LAGLWRLIAKGNKLVRGESETTLFPDMVEQMAQPRFLNLVTAHLDSCKDVCDFFGISTTLVPFVEDGK----VVGFTVKSFRNPNVDPD--NFEFEYDPLWDDADDWDYE------------GIDAEYEKEEGGSEEKVEYPDIVNKVPDKDEEIEQLSKDWVAKICSDMGVCPFTSGANMAGLPMGPVYYTTDRSSSFEDMYAVYWEEV-VRVEQQPESDLSTTLLITPEFCMDNVELFETWSTTLTQPLSALGIEESIQLVFFHPHWTFR 341          
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A7S0NF62_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NF62_9CRYP)

HSP 1 Score: 169 bits (428), Expect = 3.450e-46
Identity = 103/272 (37.87%), Postives = 149/272 (54.78%), Query Frame = 1
Query:   16 ATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
            AT L  +LA +W  +A     ++++  +L  P C  I +   +  L  HLEVC+D CE FG  V++   P+G           VQ  +G        ++    D   DD DWD+            D +D +E      +E + L  +PD D EV ++ + WV  +I+DMGVCPFS +A +AGLP+G V Y ++R+   E IY +YW EV L++ ++DE+ +STTL I P F + N+EAF     TL+Q L AL +E  IQLVFFHPQ+ FR
Sbjct:   83 ATNLADVLAHIWGAIARVMDKKSDE-IILSFPSCKVITNPMAVNKLVGHLEVCKDCCESFGSTVTLKIIPRGDGESPYFQIKTVQGASG--------SDGLAED---DDDDWDVLSKYA-------DLLDSNEATP-AELELEKLTQVPDDDNEVLKIIRDWVNVIISDMGVCPFSRNADKAGLPLGPVHYSISRQTRPEDIYSEYWKEVSLLI-QQDEKDISTTLHILPNFYIGNSEAFTSFTDTLSQSLSALGIEKYIQLVFFHPQWVFR 333          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7N7_ECTSI4.580e-12870.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2Q2_9PHAE3.440e-12670.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCU6_9STRA2.570e-6745.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XYD6_HETAK2.200e-5340.99Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D9D0_9STRA7.370e-5340.64Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2WW48_9STRA8.330e-5239.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B7FZJ1_PHATC2.920e-4939.93Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
A0A7S0G9R2_9STRA1.650e-4840.00Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A448ZRJ9_9STRA1.730e-4640.44Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0NF62_9CRYP3.450e-4637.87Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18574contigH-elongata_contig18574:376..4805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.4
Seed ortholog evalue4.6e-104
Seed eggNOG ortholog2880.D7G7N7
EggNOG free text desc.Protein of unknown function (DUF1415)
EggNOG OGs2RXZW@2759,COG3310@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF1415
Ec32 orthologEc-22_001640.1
Exons6
Model size858
Cds size855
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930062.1880524-CDS-H-elongata_contig18574:375..4811622930062.1880524-CDS-H-elongata_contig18574:375..481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 376..481 -
1691679266.1694238-CDS-H-elongata_contig18574:375..4811691679266.1694238-CDS-H-elongata_contig18574:375..481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 376..481 -
1622930062.2312694-CDS-H-elongata_contig18574:929..10391622930062.2312694-CDS-H-elongata_contig18574:929..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 930..1039 -
1691679266.1792402-CDS-H-elongata_contig18574:929..10391691679266.1792402-CDS-H-elongata_contig18574:929..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 930..1039 -
1622930062.245814-CDS-H-elongata_contig18574:1726..18571622930062.245814-CDS-H-elongata_contig18574:1726..1857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 1727..1857 -
1691679266.1873631-CDS-H-elongata_contig18574:1726..18571691679266.1873631-CDS-H-elongata_contig18574:1726..1857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 1727..1857 -
1622930062.2582946-CDS-H-elongata_contig18574:2583..28301622930062.2582946-CDS-H-elongata_contig18574:2583..2830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 2584..2830 -
1691679266.1955051-CDS-H-elongata_contig18574:2583..28301691679266.1955051-CDS-H-elongata_contig18574:2583..2830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 2584..2830 -
1622930062.2746792-CDS-H-elongata_contig18574:3631..37271622930062.2746792-CDS-H-elongata_contig18574:3631..3727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 3632..3727 -
1691679266.2036417-CDS-H-elongata_contig18574:3631..37271691679266.2036417-CDS-H-elongata_contig18574:3631..3727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 3632..3727 -
1622930062.2901256-CDS-H-elongata_contig18574:4637..48021622930062.2901256-CDS-H-elongata_contig18574:4637..4802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 4638..4802 -
1691679266.2144759-CDS-H-elongata_contig18574:4637..48021691679266.2144759-CDS-H-elongata_contig18574:4637..4802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18574 4638..4802 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930062.3061945-UTR-H-elongata_contig18574:4802..48051622930062.3061945-UTR-H-elongata_contig18574:4802..4805Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18574 4803..4805 -
1691679266.2225406-UTR-H-elongata_contig18574:4802..48051691679266.2225406-UTR-H-elongata_contig18574:4802..4805Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18574 4803..4805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18574.5032.1prot_H-elongata_contig18574.5032.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18574 376..4802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18574.5032.1

>prot_H-elongata_contig18574.5032.1 ID=prot_H-elongata_contig18574.5032.1|Name=mRNA_H-elongata_contig18574.5032.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp
MTSQATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGL
YEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGAGAGAGE
GNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALD
SLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTRE
ATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQT
LTQPLEALHLEDDIQLVFFHPQYSFRWVMTRQHV*
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mRNA from alignment at H-elongata_contig18574:376..4805-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18574.5032.1 ID=mRNA_H-elongata_contig18574.5032.1|Name=mRNA_H-elongata_contig18574.5032.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4430bp|location=Sequence derived from alignment at H-elongata_contig18574:376..4805- (Himanthalia elongata Himel1 dioecious)
TCTATGACATCACAGGCAACGCGACTGCCAGGCCTACTGGCGGAGGTGTG GGAGAAACTCGCCGACCCTTCCGCGGCGCAAGCAAACAAGCCGTGCGTCC TTCTCGTCCCCGACTGCCCAGCAATCGCCGACGCGCGTGGCCTGCAAGGA CTCTACGAGCACCTGGAGGTACACAATACGGTGCCAGAAACAGAGAGTCA AAAATCAACATTTTACCCGAAGAAAAGATAAGATAAAAATACGGAAATTT CCTGTTTAAAAAAGAAAAGAAAATCCCCACTTATGTGCTTTCTTCTCGAA TGGGCTTTCGATCGCGAAGCCTTGTGTTTTCACGCCTCGCCTTTGTTTTC TGGCGCACAGATACAGGGTAAATATCGCCGCAACACGCAATAAAATTGAC TTACTAATGGAATCTCGATTCAATTACTTGTCCCCCCCTCCCCCACATAC TCCCTAAAGGTCCAACAGCTTAAGACATGCGAGATTTGAGGACGCCCCCC TCCATGCAGGAGTTTATGCAGTATGTCACCTTTGAGCTCAGACACCTCGG TCGAAGAATCTCGTCTCTCTCGCCCCAAAGGGGTGGAACGCATCAAGATC TATAGGATGCCTGCTGGGCAATAAATTGTTGGAAACCCCTGTAGCAAGCA TATAGTCTATACTTGTGATAGTTCTCCCCCGCCAGGAGTACAGTATTCAT GAGCACAATGCAGTCTTGAGTTTTATCACACATGTGCCGTTGGGAATGTA GTGTGCGTGCGGCGCTAATGCGTTCACGCGCGGAGGTCAAAGTATATATG AGGTACTTGGGAGTGTAGTGGCGCCCGCTGAATGTGTACTATTTGGTTAC CCGGTGTGTGCAATTACGCGAGGATGATGACGACTAAACGCTGATATCAT CATTTTGAAAGGTAGCATGGCCGTCGAAAACCCGGTATAATCTCACTCCG TCTCGTCCCGACATTGTTGGAAATGCCCGGTAGATGTCCGTTAGGATACG ACATGTGTTTAATAGAAGTACACCCCCACCCCTTCCCTAAAAATCCTCAA CCAATTCGTGGAAACCTTCACGCCGCAGGTGTGTCAGGACGCATGCGAAC GGTTCGGGAGGGAAGTATCGATCGTGCCTCACCCAAAGGGCGGAAAAAAC GGTGCTCCGGTCCCCGCGCTCGTGGTGAGGAGGAGAATATACGAGCATGG CTTGTGGATATCGCACCGGGATCGTGCTCCCTGGTGCGGTGAAAGACGTT CATTTATTTTAGAAAATAAAAATGGAAGCTTCGCCGAGGCCTTGTGTAGA CGGTTGGATTTTGAAATAAATAGCCACCTCGAAGATAAATATGTTATTTT TACCTTAAGCCCCGAAAGTTGTTTTGCTATAGGGATTTTAACCAGTCTTT GGAGTCTTGTGTACCCATACCCAAGACGATTTACGTACACAGTATATTAC ATCCGGAAAACGACGGCTTTAAAGAAAGCTTCGAACAGTTTCTGTATATA TATATAGTATATACATTAGTAGTAGTAGTAGTAGTAGTTTCAGTACTTTC TGCTTATTGATTGCGCGCCACACGGTGGTCAATTCCGCGTGTGGTCTGCT TAAAATGCAGGAGGAAACTGTTTTCCTGGAGTCCGCTGGACGTCTGTCTC GCCGCAGTGGCCAGTGGTTCCCGCGGGTGTTTATTATGATTTCGTTGCCC TTTTGAAGGCGTTTCTTCACGGGTTCAACGTCGTTAGTAAAAACAAACAA ACGATTCCGTTCCCCTTCCCCCGTTTTCAAAAATTTAGGCTACGAGTACC ATCCCATCCGTACCGCGCAACCGCGCAATACTCCATGCGTATTTCGTATT TGTGCGGAAGAAGAAAAAAAAAAGTCGAAACGGCGCAGACCCGCCCACGG GAAGAAGGGCGGGTTGGCTTCTTTTACAAACTCTGTATTGTCAAATACTG TTCTACAACGCGCGTGACGCAACAGGTTCAGGCCGTAGCCGGCGCCGGTG CCGGCGCAGGCGAGGGTAACGAAGAGTTTGGCTACGACCCAAACTGGGAT GATGGCGACTGGGACATCGACCGTTCGCTCCTCGGCGACGACGATACTGA CGACGACGGTGTTGACGTTGATGAGGGTGGCGATTGGGTCGGAGTGGAGC GCGACGCGTTGGACTCGTTGCCTGATTCGGACGAGGAGGTAACGGAGCTG ACCAAGGCGTGGGTGCAGGCGGGTGAGATGGCGCGCGTAAGGCCCCGCCA CTAGTCGACCTTGTTTTTGTTTTTCGTTTTTGTTTTTGTGTGTGTTTATT TATTATTTTTCTTGACGTTGCCTAATCTTATTTAGTTGGTTTCGTTCGTG TTTTGCTTCATTTTATGTATTTTGGTGCTTTTTGCTCAGGTCGATCTTTT CGCCCCCGCACCTGCGGTATAAGTGCACACTTTATGCAGGATGAAAAACG CCTTCTAAATGTTTTTGGGGGCACACGCTGGCGATATCTCTCTCTCAAAA GCTCGCCGCGGTTTTTGCTCTCTCTCTCGCTGAGAAAACAATACAAAGAG GACAGGGATTTTTATAACCCATCCCCGAGAGAGGGTGCTACAAACAGCCC GCCAACGATAACCGGCACGCAAGTAATGCTTCCTTTCAGCGAATCACTTT AAATTACACCTCCCCCCATGGGCATCCCTACACAGGTATTGGTCATGAGA TAAGACGACCAAAAAGAGACGATTGCAAACGCGCCCCTTTCTCGTGGCCC CTCCCTATACGCATTGGGTGCTCTTGATCACCTCCCAGCATGCAGTTGGT GCTCCTCGCTATCTCTCCGCGGAGGACGCGCCTGTTTTGTCCCCAAGAGC GGGGGATGTCTCGCGCACATTTTTGTTGGGCTCGGAATGTCGCTGTCCCC GTCCCCGTCTAAGTCCTCGTCGCCGCCTTTGGTTGCCTCCCGTGGCAGTC ATCACCGACATGGGTGTCTGCCCGTTCAGCGTGGACGCCTCGCGAGCAGG CCTCCCTGTGGGACTTGTCCGATACCCCGTGACGAGGGAGGCGACGGCGG AAGCGATATACAGAGACTACTGGGGAGAGGTATGACGGCGAGATAAAACC TACCGGTACCTAACCTAATTAAGCTAGACTAAACTAAACTAAACTAAAGC GCACGATTCCTTTCGCCCCGTTCCCTCCCTTTACACGAAGACCTGAATTC AAACACAAACAAATATACTGAATAACAAGAAAACGAATGCACAAAAATGT ACACAAAATAGTAGTAATATGCGCAATATATATATTTATATAGTACTGTG TGTACTAACTTTTTTTTTCACCAACACAAATAAAGTACTTTCTATATACA AAACAAAAATATAAAAAATCTACATCAGCTGAGACAACGAATTGCCCCGG GTATTCTCATATAATGTAGAGCTAGCTATATAGAGAGGGCTATTATCGGT ATAGGGATTTGTGGGTTGACGACCCTACGCTGCATGAGAGCGCCTGGCCT TGCCTGCTGTCTTCCATTCGTCCCATCCCATCCCAGTCCATTCCGTTCCG TTCTGTTCCATATCATACCATCCTTTGCTTTTCGAAGGCGCTCTCTTTGG GGGACTGAGTGGGAGTCATTATTTGCCGCTTACAAATCGAGGATGGTATG ACATTACATTACATTACATCGCATCGCATCCACGTTGCATGCTTCGAGGC GCGCGGTCTAACACGTTCTCAAAATAAAATGATCGCGATGGCTGTGGCAT GCGTGGACGATCGAAGGTGGACCTGATCGTCTCCGAGAAGGACGAGCGCT CGCTGAGCACGACGTTGCTCATCACTCCCGAGTTCGCCCTCAACAACGCC GAGGCCTTCGAGGTCATTGGACAGACGTGAGAGCAAGACAGACAGAACAA ACATACATGCCAATAGAGTATAGAATCCGCGAGTTTTTACGTATGTGTGT GTGTGTGTGTGTGTGTGTGTGCATTTATTAAATTGCACATAACCGCGCAA TCCGGCCCTGTCATGCTAGTAATAGCCACTCTAGACTCCTCTCGTTTTGA TCCTCCCTATGGGGGATCAATCATGTGTATGTGTGTGTGTGTGTGTGTGT GTGTATTCGTTTTTCGTGAAACATGTACCAGGCATATCATGCTAGATACT ATATACGACATACGCTATATACGACATACGCTATACGGTATACTAGCGGC AAAGAAGGAGTATGATGTCTCAAAAGAAGGGAAACCATCGCTTTTCGGGT ATTCTCTTTTTTATTACCTACCCGGTGCGGGTATCCTGGGGGTCCTGATT GTCGTCTTGTGTGCCGCACCGCAGGCTGACCCAACCGCTGGAGGCTCTTC ATCTGGAGGATGACATACAGCTTGTCTTCTTCCACCCTCAGTACTCCTTC AGGTGGGTTATGACGCGCCAACATGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig18574:376..4805-

>mRNA_H-elongata_contig18574.5032.1 ID=mRNA_H-elongata_contig18574.5032.1|Name=mRNA_H-elongata_contig18574.5032.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig18574:376..4805- (Himanthalia elongata Himel1 dioecious)
ATGACATCACAGGCAACGCGACTGCCAGGCCTACTGGCGGAGGTGTGGGA
GAAACTCGCCGACCCTTCCGCGGCGCAAGCAAACAAGCCGTGCGTCCTTC
TCGTCCCCGACTGCCCAGCAATCGCCGACGCGCGTGGCCTGCAAGGACTC
TACGAGCACCTGGAGATGACATCACAGGCAACGCGACTGCCAGGCCTACT
GGCGGAGGTGTGGGAGAAACTCGCCGACCCTTCCGCGGCGCAAGCAAACA
AGCCGTGCGTCCTTCTCGTCCCCGACTGCCCAGCAATCGCCGACGCGCGT
GGCCTGCAAGGACTCTACGAGCACCTGGAGGTGTGTCAGGACGCATGCGA
ACGGTTCGGGAGGGAAGTATCGATCGTGCCTCACCCAAAGGGCGGAAAAA
ACGGTGCTCCGGTCCCCGCGCTCGTGGTGTGTCAGGACGCATGCGAACGG
TTCGGGAGGGAAGTATCGATCGTGCCTCACCCAAAGGGCGGAAAAAACGG
TGCTCCGGTCCCCGCGCTCGTGGTTCAGGCCGTAGCCGGCGCCGGTGCCG
GCGCAGGCGAGGGTAACGAAGAGTTTGGCTACGACCCAAACTGGGATGAT
GGCGACTGGGACATCGACCGTTCGCTCCTCGGCGACGACGATACTGACGA
CGACGGTGTTGACGTTGATGAGGGTGGCGATTGGGTCGGAGTGGAGCGCG
ACGCGTTGGACTCGTTGCCTGATTCGGACGAGGAGGTAACGGAGCTGACC
AAGGCGTGGGTGCAGGCGGGTTCAGGCCGTAGCCGGCGCCGGTGCCGGCG
CAGGCGAGGGTAACGAAGAGTTTGGCTACGACCCAAACTGGGATGATGGC
GACTGGGACATCGACCGTTCGCTCCTCGGCGACGACGATACTGACGACGA
CGGTGTTGACGTTGATGAGGGTGGCGATTGGGTCGGAGTGGAGCGCGACG
CGTTGGACTCGTTGCCTGATTCGGACGAGGAGGTAACGGAGCTGACCAAG
GCGTGGGTGCAGGCGGTCATCACCGACATGGGTGTCTGCCCGTTCAGCGT
GGACGCCTCGCGAGCAGGCCTCCCTGTGGGACTTGTCCGATACCCCGTGA
CGAGGGAGGCGACGGCGGAAGCGATATACAGAGACTACTGGGGAGAGTCA
TCACCGACATGGGTGTCTGCCCGTTCAGCGTGGACGCCTCGCGAGCAGGC
CTCCCTGTGGGACTTGTCCGATACCCCGTGACGAGGGAGGCGACGGCGGA
AGCGATATACAGAGACTACTGGGGAGAGGTGGACCTGATCGTCTCCGAGA
AGGACGAGCGCTCGCTGAGCACGACGTTGCTCATCACTCCCGAGTTCGCC
CTCAACAACGCCGAGGCCTTCGAGGTCATTGGACAGACGTGGACCTGATC
GTCTCCGAGAAGGACGAGCGCTCGCTGAGCACGACGTTGCTCATCACTCC
CGAGTTCGCCCTCAACAACGCCGAGGCCTTCGAGGTCATTGGACAGACGC
TGACCCAACCGCTGGAGGCTCTTCATCTGGAGGATGACATACAGCTTGTC
TTCTTCCACCCTCAGTACTCCTTCAGGTGGGTTATGACGCGCCAACATGT
ATAAGCTGACCCAACCGCTGGAGGCTCTTCATCTGGAGGATGACATACAG
CTTGTCTTCTTCCACCCTCAGTACTCCTTCAGGTGGGTTATGACGCGCCA
ACATGTATAA
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