mRNA_H-elongata_contig18574.5032.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: D7G7N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N7_ECTSI) HSP 1 Score: 382 bits (982), Expect = 4.580e-128 Identity = 200/282 (70.92%), Postives = 229/282 (81.21%), Query Frame = 1
Query: 1 SMTSQATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDW-----VGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
++ S+ATRL GLLA+VWE LADPSAA+A +P VL+ PDCPA+A+ARGLQ LYEHLEVCQDACE+FG VSIVPHP+GG+ GAP P+LVVQ V G ++FGYDP+ IDRSLL DD+ + +G GGDW V V+ AL +P SDEEV ELTK+WVQAVITDMGVCPFSVDASRAGLPVG VRYPVTRE TAE+IYR+YW EV+L+VSE +ERSLSTTLLITPEF+LNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQY+FR
Sbjct: 30 TVLSKATRLSGLLADVWETLADPSAAEAERPRVLMFPDCPAVAEARGLQNLYEHLEVCQDACEQFGTMVSIVPHPRGGRTGAPAPSLVVQVVPGAGG-----GDDFGYDPDXXXXXX-IDRSLLDDDEAEGEGA---AGGDWDEDGVVRVDAAALSVVPSSDEEVQELTKSWVQAVITDMGVCPFSVDASRAGLPVGQVRYPVTRETTAESIYREYWREVELLVSETNERSLSTTLLITPEFSLNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYAFR 302
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A6H5L2Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q2_9PHAE) HSP 1 Score: 382 bits (982), Expect = 3.440e-126 Identity = 199/282 (70.57%), Postives = 229/282 (81.21%), Query Frame = 1
Query: 1 SMTSQATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDW-----VGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
++ S+ATRL GLLA+VWE LADPSA +A +P VL+ PDCPA+A+ARGLQ LYEHLEVCQDACE+FG VSIVPHP+GGKNGAP P+LVVQ V G ++FGYDP+ IDRSLL DD+ + +G GGDW V V+ AL +P SDEEV ELTK+WVQAVITDMGVCPFSVDASRAGLPVG +RYPVTRE TAE+IYR+YW EV+L+VSE +ERSLSTTLLITP+F+LNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQY+FR
Sbjct: 92 TVLSKATRLSGLLADVWETLADPSAVEAERPRVLMFPDCPAVAEARGLQNLYEHLEVCQDACEQFGTMVSIVPHPRGGKNGAPAPSLVVQVVPGAGG-----GDDFGYDPDXXXXXX-IDRSLLDDDEAEGEGA---AGGDWDEDGVVRVDAAALGVVPSSDEEVQELTKSWVQAVITDMGVCPFSVDASRAGLPVGQIRYPVTRETTAESIYREYWREVELLVSETNERSLSTTLLITPDFSLNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYAFR 364
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A835ZCU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU6_9STRA) HSP 1 Score: 227 bits (579), Expect = 2.570e-67 Identity = 128/279 (45.88%), Postives = 167/279 (59.86%), Query Frame = 1
Query: 7 TSQATRLPGLLAEVWEKLA----DPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
TS+A L LA W + DP +Q V+L+PDCPA+AD LQ LY HLE CQD CE+FG EV + PHP + A L V AG ID SLLGDD D + AL S+PDSDEEV +++K W +A+I MG+CPF+VDA+RAGLP+G + YPV++ TAE +YRDYW +V+ ++S D R ++TTL+ITP F L N EAF+++ QTLT+PLE L LE+D+QLVFFHPQ++FR
Sbjct: 24 TSKAQTLASALAAAWTAICNVIEDPETSQ-----VVLLPDCPALADRITLQKLYNHLEQCQDCCEKFGAEVVLTPHPATSSSPAAFEFLSVTGKAGSREGLDDYQFXXXXXXXXX---XXIDTSLLGDDTED-------------YSQISALTSVPDSDEEVLQISKEWNEAIIAGMGICPFAVDANRAGLPIGGIHYPVSKSDTAEFVYRDYWNQVEYLLSA-DVREVATTLMITPRFGLANVEAFDILTQTLTEPLELLGLEEDVQLVFFHPQHTFR 280
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A7S3XYD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYD6_HETAK) HSP 1 Score: 190 bits (482), Expect = 2.200e-53 Identity = 116/283 (40.99%), Postives = 152/283 (53.71%), Query Frame = 1
Query: 10 SQATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQ-AVAGXXXXXXXX--------NEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
S A +P +WE + P LL P+C I D + + EHLEV +D+C FG ++ + +P G P P V+ VAG N F D WDD DWDIDRSLLG++D G +R+ L + DEE+ TK W + VI MGVCPF+ A RAGLP+G V YP++R +E IYRDYW +V L++ + + LSTTLLITP F L+N E F++ +LTQPLE L +E IQLVFFHP+Y FR
Sbjct: 71 SNAKNIPEAFHALWESIC------MGNPAALLFPNCAEIPDQATAEAMLEHLEVAKDSCTIFGTDIVVNLNPAG-----PCPTFEVKKVVAGGSYGGSSDGATSVGGFNFNFADDDAWDD-DWDIDRSLLGEED-----------GTAAQRKREQLAT----DEEILAATKEWNEQVICRMGVCPFATSAERAGLPLGRVHYPISRAERSEEIYRDYWAQVALLI-DSPPKELSTTLLITPNFGLHNVEGFDMFSNSLTQPLEPLGVERYIQLVFFHPEYCFR 325
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A4D9D9D0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9D0_9STRA) HSP 1 Score: 191 bits (486), Expect = 7.370e-53 Identity = 115/283 (40.64%), Postives = 160/283 (56.54%), Query Frame = 1
Query: 13 QATRLPGLLAEVWEKLADPSAAQANKPC---VLLVPDCPAIADARGLQGLYEHLEVCQDACERFG-REVSIVPHPKGGKNG--APVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSE----KDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
Q L +LAEV++++ A+ P +LL P + D + ++ +HL++C++ CE G + +I HP PVPAL+++ +A +EF DP WDD D D S L +E G+ E++ L +P+ D V + WV A+I D+GVCPF+V+A +AGLP G +RY + R + E IYR YW EV LI ++ +DERSLSTTLLITP F L N E FE TLTQPLEAL LED++QLVFFHP++ FR
Sbjct: 105 QHASLAEVLAEVYDQVLKAEKAEKGAPPPEHLLLFPQAEQLYDGQMMRQFGDHLDLCKECCEVMGVSQNTIAMHPSTTSPALQTPVPALLIKGIANA-------EDEFEDDPFWDDDDEGFDFSALY----------ANEDGETDAREQEKLYEVPEGDGPVISGMREWVDAIIADLGVCPFTVNAGKAGLPQGAIRYEINRSMSPEEIYRKYWQEVALISTDSAQAQDERSLSTTLLITPNFGLRNREFFETFSNTLTQPLEALGLEDEVQLVFFHPEWVFR 370
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A7S2WW48_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW48_9STRA) HSP 1 Score: 186 bits (471), Expect = 8.330e-52 Identity = 112/282 (39.72%), Postives = 152/282 (53.90%), Query Frame = 1
Query: 10 SQATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVP----HPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDE----GGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
S A L + A VW K++D Q ++ P+C ++ L L +HLE+C+D CE FG E+ P PK +P P + ++ F D +WDD DW++ +D+G GG++ E D L ++P D + E++K+WV A+I DMGVCPF+ A R GLP+G V YPV R +T E +Y YW EV L+ + D+R LSTTLLITP F L N EAF TLT PLE L LE +QLVFFHPQ++FR
Sbjct: 70 SDARTLATVFAHVWSKISDSKLDQQ----FIVFPECTELSADGTLVRLMDHLELCKDVCESFGTEIQAFPLDPRAPKDHPAHSPAPGVALRRFG-------QQGHVFAPDDDWDD-DWEL---------PEDEGFPAPSSSAAGGEFSKAELDCLAAVPADDASLVEISKSWVGAMIADMGVCPFTTSAERGGLPLGTVHYPVCRSSTVEEVYAAYWKEVALLEAT-DQRELSTTLLITPNFGLTNTEAFIAFTDTLTTPLEGLGLETLMQLVFFHPQWTFR 329
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: B7FZJ1_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZJ1_PHATC) HSP 1 Score: 181 bits (460), Expect = 2.920e-49 Identity = 109/273 (39.93%), Postives = 146/273 (53.48%), Query Frame = 1
Query: 28 PGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNE-EFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSL----PDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
P LLA VW+++A + ++ P R L L HL+ C+D C+ FG ++VP+ K GK +V V +E EFGYDP WDDG D D G DD D + +D ++ PD DE++ ++TKAWV ++TDMG+CPF+ +AGLP+G V Y V R E +Y YW EV + V + E+ +STTLLI PEF +N E FE TLTQPL AL +ED +QLVFFHPQ+ FR
Sbjct: 90 PQLLAGVWDQIAHAGTMSKGETNTVIYPQIQDKFTPRYLNLLMGHLDFCKDVCDHFGISTALVPYQKDGK-------IVGFTVKSFRNSESKEDEYEFGYDPFWDDG-TDFDNLYAGVDDDD--------------MAKDPYPAIEVVVPDDDEDIIDITKAWVGKMMTDMGLCPFTAGPEQAGLPMGNVHYEVDRSTGVEEMYAKYWHEV-VRVEQNKEKDISTTLLIVPEFMRDNVELFESFSNTLTQPLTALDVEDLLQLVFFHPQWVFR 339
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A7S0G9R2_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G9R2_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.650e-48 Identity = 108/270 (40.00%), Postives = 153/270 (56.67%), Query Frame = 1
Query: 34 LLAEVWEKLADPSAAQANKPCVLLVPDCPA-IADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGD--W-DIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
LLA VW+ + S + + +L P + + DA + HL+ C+D CE FG ++P+ G G P L+ V E+F YDP WDD D W D+D LG DD D DE + +++P +D+E+ ++T+ WV +++DMG+CPF+ +G+P+G V Y V R + E +Y YW EV + V + E+ LSTTL+ITPEFALNNAE FE TLTQPL++L +ED +QLVFFHPQ+SFR
Sbjct: 101 LLASVWDLIRSTSDMERGEERTILYPSMSSKLTDASWVSRFMNHLDTCKDVCEVFGISNVLIPYT-GFPLGGPFRPLLGFTVKSYANRGADQEEDFEYDPLWDDSDDYWGDLD---LGFDD------DEDEINSEAALPDIVGEAVPANDDEMIQVTRRWVDKMMSDMGICPFTSGPDMSGMPMGKVYYCVDRSSKVEDLYASYWKEV-VRVEQSTEKELSTTLMITPEFALNNAEMFECFSGTLTQPLQSLDVEDLLQLVFFHPQWSFR 359
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A448ZRJ9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRJ9_9STRA) HSP 1 Score: 172 bits (436), Expect = 1.730e-46 Identity = 110/272 (40.44%), Postives = 150/272 (55.15%), Query Frame = 1
Query: 37 LAEVWEKLADPSAAQANKPCVLLVPDC-PAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGD-WDIDRSLLGDDDTDDDGVDVD----EGGDWVGVER-DALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
LA +W +A + + L PD +A R L + HL+ C+D C+ FG ++VP + GK V V++ N EF YDP WDD D WD + G+D + EGG VE D ++ +PD DEE+ +L+K WV + +DMGVCPF+ A+ AGLP+G V Y R ++ E +Y YW EV + V ++ E LSTTLLITPEF ++N E FE TLTQPL AL +E+ IQLVFFHP ++FR
Sbjct: 89 LAGLWRLIAKGNKLVRGESETTLFPDMVEQMAQPRFLNLVTAHLDSCKDVCDFFGISTTLVPFVEDGK----VVGFTVKSFRNPNVDPD--NFEFEYDPLWDDADDWDYE------------GIDAEYEKEEGGSEEKVEYPDIVNKVPDKDEEIEQLSKDWVAKICSDMGVCPFTSGANMAGLPMGPVYYTTDRSSSFEDMYAVYWEEV-VRVEQQPESDLSTTLLITPEFCMDNVELFETWSTTLTQPLSALGIEESIQLVFFHPHWTFR 341
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Match: A0A7S0NF62_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NF62_9CRYP) HSP 1 Score: 169 bits (428), Expect = 3.450e-46 Identity = 103/272 (37.87%), Postives = 149/272 (54.78%), Query Frame = 1
Query: 16 ATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLYEHLEVCQDACERFGREVSIVPHPKGGKNGAPVPALVVQAVAGXXXXXXXXNEEFGYDPNWDDGDWDIDRSLLGDDDTDDDGVDVDEGGDWVGVERDALDSLPDSDEEVTELTKAWVQAVITDMGVCPFSVDASRAGLPVGLVRYPVTREATAEAIYRDYWGEVDLIVSEKDERSLSTTLLITPEFALNNAEAFEVIGQTLTQPLEALHLEDDIQLVFFHPQYSFR 831
AT L +LA +W +A ++++ +L P C I + + L HLEVC+D CE FG V++ P+G VQ +G ++ D DD DWD+ D +D +E +E + L +PD D EV ++ + WV +I+DMGVCPFS +A +AGLP+G V Y ++R+ E IY +YW EV L++ ++DE+ +STTL I P F + N+EAF TL+Q L AL +E IQLVFFHPQ+ FR
Sbjct: 83 ATNLADVLAHIWGAIARVMDKKSDE-IILSFPSCKVITNPMAVNKLVGHLEVCKDCCESFGSTVTLKIIPRGDGESPYFQIKTVQGASG--------SDGLAED---DDDDWDVLSKYA-------DLLDSNEATP-AELELEKLTQVPDDDNEVLKIIRDWVNVIISDMGVCPFSRNADKAGLPLGPVHYSISRQTRPEDIYSEYWKEVSLLI-QQDEKDISTTLHILPNFYIGNSEAFTSFTDTLSQSLSALGIEKYIQLVFFHPQWVFR 333 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18574.5032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18574.5032.1 >prot_H-elongata_contig18574.5032.1 ID=prot_H-elongata_contig18574.5032.1|Name=mRNA_H-elongata_contig18574.5032.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp MTSQATRLPGLLAEVWEKLADPSAAQANKPCVLLVPDCPAIADARGLQGLback to top mRNA from alignment at H-elongata_contig18574:376..4805- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18574.5032.1 ID=mRNA_H-elongata_contig18574.5032.1|Name=mRNA_H-elongata_contig18574.5032.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4430bp|location=Sequence derived from alignment at H-elongata_contig18574:376..4805- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18574:376..4805- >mRNA_H-elongata_contig18574.5032.1 ID=mRNA_H-elongata_contig18574.5032.1|Name=mRNA_H-elongata_contig18574.5032.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig18574:376..4805- (Himanthalia elongata Himel1 dioecious)back to top |