mRNA_H-elongata_contig18573.5031.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A6H5LAX6_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAX6_9PHAE) HSP 1 Score: 216 bits (550), Expect = 2.170e-59 Identity = 124/286 (43.36%), Postives = 174/286 (60.84%), Query Frame = 1
Query: 1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQP---RRGMWGGDRETFAIGWWGVLRRSFSS-------------LRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFVEFDEVSAERDTNNDGIIDMHEI 810
VTLTTVGYGDLSAH TKLF C YIL+GVAM+ A L+KLVE+LLD+Q L +++ + M +T WG + + + +N +V+VG G+ +FV L+ G +F +S +DAFYLTVVS+STVGYGD+ P +T T++F IF+LP+STLLL KVISDYTEM + Q R+LL+ ++ ++ MD + D +V E++V L++QEK+TQE+I+ + F LD D +GFV DE+ ERD + DG I E+
Sbjct: 167 VTLTTVGYGDLSAHKPVTKLFACFYILIGVAMVAAFLSKLVELLLDKQAGRRLSMIRGMVALVVAQAMGVDYPDTAMKTQWGSGATNGGTPAAQQDTAGDNDDIALVNSINVEVGLGVFYFVLLVGVGTTVFMVYGHMSVIDAFYLTVVSSSTVGYGDYFPSSTGTRLFAIFFLPLSTLLLGKVISDYTEMQANKRVKQRQTRLLLATVTAREYSAMDADNDNRVSLMEFMVHTLIKQEKVTQEDIEEIHTRFTALDKDHNGFVTRDEIGEERDKDGDGFIGADEL 452
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A2V3ITP7_9FLOR (Two pore potassium channel c n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITP7_9FLOR) HSP 1 Score: 136 bits (342), Expect = 1.750e-31 Identity = 81/250 (32.40%), Postives = 142/250 (56.80%), Query Frame = 1
Query: 1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSF--SSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFV 744
VT TTVGYGD++ ++KLFV Y++V +A+I A+L +V +L+D+QEE+L++ ++ GGD ++ + + S +R+L I+ + ++ GV +F LS ++A Y+TV+SASTVG+GD P +K+ + +L ST+ AKV++D M + Q+R++ +++ MD++RD +VDK E+L + L+R K+ ++E+ + F LD D SG++
Sbjct: 112 VTTTTVGYGDITPTRGSSKLFVIYYVVVSIAIISAVLGHIVGMLIDRQEELLINAME---------GGDEDSDSDNEIQARKGLVDESDIRQLV-------VSISTLLVILAMGVVVFMRLEKLSLLNALYVTVISASTVGFGDLQPTRNVSKMIMTIWLCFSTICAAKVVADVAAMVAKMKQKAVQRRLMSARMDIRTLVGMDKDRDNRVDKTEFLAQMLIRSGKVEEDEVQELLKRFDELDVDNSGYI 345
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: R7QMR7_CHOCR (EF-hand domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMR7_CHOCR) HSP 1 Score: 130 bits (328), Expect = 2.060e-29 Identity = 77/253 (30.43%), Postives = 142/253 (56.13%), Query Frame = 1
Query: 1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKR---RQPRRGMWGGDRETFAI---GWWGVLRRSFSSLRKLN-PYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESG 738
VT TTVGYGD++ +S KL+V Y++V + ++ +L+ L+ +LLD+QEE+LL + R P M D + R ++ + L+ + +G + + + G+ +F +L+ +DA Y T++SASTVG+GD+ P +TK+ + +L ST+ + K+++D+T+ V+A +R+L + ++ +D ++DG VDK E+L + L+R K+ Q+++D + F LD + +G
Sbjct: 113 VTTTTVGYGDITPKSSVAKLYVIYYVIVSIGLVSTMLSYLIGLLLDRQEEVLLAAIVRDRDEDPVSEMRTADGSVDVEEPPSTASINERIMNATKSLDISDYCGLGFAVGFLGLALAVGMLVFMGLENLAPIDAAYATIISASTVGFGDYEPTRNSTKVIMTVWLCFSTIAVGKLVADFTDANVKAKQRDVSRRLLTATMNVESIRNLDMDKDGSVDKCEFLTQMLVRSGKVEQKDLDAILLRFDQLDKNSNG 365
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: UPI0010360C7B (two-pore potassium channel 3-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010360C7B) HSP 1 Score: 125 bits (315), Expect = 1.570e-27 Identity = 85/260 (32.69%), Postives = 131/260 (50.38%), Query Frame = 1
Query: 1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSF--SSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFVEFDEVSAERD 774
VTL T+GYGD+ S TKLF C +ILVG ++ LL LV +LD+QE +LL + Q + + R++ + +KVG +A V I G +S+VD+FYL+V S +TVGYGD++ T A + F I +L VSTL +A+ TE+ ++ N R K +L K++ D D + DG + K EY++ +L KI +++I ++ F LD G + ++ E D
Sbjct: 153 VTLCTIGYGDIVPDTSFTKLFTCAFILVGFGLVDILLNGLVTYILDRQEAVLLSTVDENQ-----------------FNTMVRAYVIDPAKGRMRIRMKVGLALAVVVGCIAIGTVTVHLLEDMSWVDSFYLSVTSVTTVGYGDYAFTTLAGRCFAIIWLLVSTLAVARAFLYLTELRIDKRNRRIAKWVLQKKMTLGDLVAADLDHDGSISKSEYIIYKLREMGKIAEKDIMQICTQFDTLDNTNCGRLTIADLMEESD 395
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A5J5A522_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5A522_9ASTE) HSP 1 Score: 124 bits (310), Expect = 6.450e-27 Identity = 83/246 (33.74%), Postives = 126/246 (51.22%), Query Frame = 1
Query: 1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESG 738
VTL T+GYGD+ + TKLF C +ILVG + LL LV +LD QE +LL + + + T+ I + + +KVG +A ++ I G +S+VD+FYL+V S +TVGYGD++ KT + F I +L VSTL +A+ TE+ ++ N + K IL K++ D D + DG + K EY++ +L KIT+++I + N F LD G
Sbjct: 148 VTLCTIGYGDIVPDTTFTKLFTCAFILVGFGFVDILLNGLVTYILDMQEAVLLSTVYENKSNTMV-----RTYMI----------DTAKGRMRIRMKVGLALAVVISCIAIGTVSVHFLEEMSWVDSFYLSVTSVTTVGYGDYAFKTLTGRCFAIVWLLVSTLAVARAFLYLTELRIDKRNRKIAKWILQKKMTLGDLVAADLDHDGSISKSEYIIYKLKEMGKITEKDIMLICNQFDTLDHSNCG 378
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A834GNZ6_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834GNZ6_RHOSS) HSP 1 Score: 124 bits (310), Expect = 7.820e-27 Identity = 82/246 (33.33%), Postives = 128/246 (52.03%), Query Frame = 1
Query: 1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESG 738
VTL T+GYGD+ + TKLF C +ILVG I LL+ LV +LD+QE +LL + Q + T+ I + + +KVG +A V I G + L++VD+FYL+V S +TVGYGD++ T + F I +L VSTL +A+ TE+ ++ N + K +L K++ D D + DG + K EY++ +L KI ++++ ++ N F +LD G
Sbjct: 160 VTLCTIGYGDIVPDTTFTKLFTCAFILVGFGFIDILLSGLVTYVLDRQEAVLLSTMDANQLNSMV-----RTYMI----------DTAKGRMRIRIKVGLALAVVVGCIAIGTFTARYLEGLTWVDSFYLSVTSVTTVGYGDYAFTTATGRGFAIIWLLVSTLAVARAFLYLTELRIDKRNRKIAKWVLQRKMTLGDLVAADLDHDGSISKSEYIIYKLKEMGKIAEKDLMQICNQFDMLDNTNCG 390
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A817A7A8_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A817A7A8_BRANA) HSP 1 Score: 119 bits (299), Expect = 1.140e-26 Identity = 82/248 (33.06%), Postives = 132/248 (53.23%), Query Frame = 1
Query: 1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFV 744
VT+ T+GYGD++ ++ TKLF +++LVG I LL+ +V +LD QE +LD KRR+ R ++ I +++ +R +KV + V+ I GV I + ++D+FYL+V+S +TVGYGD + KT ++F +L VSTL +A+ E V+ N KR+L +S + F D + +G V K EY++ +L EKIT ++I + F LD +G +
Sbjct: 9 VTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKRREEP-----DKRRSYIID----VKKGRMRIR------LKVALALGVVVSCIALGVGIMHFIEKIDWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAVWLLVSTLAVARAFLYLAEARVDKRNRERAKRVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDITPISKQFDKLDRCSNGKI 241
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A8B8NB92_9MYRT (two pore potassium channel c-like n=7 Tax=Myrtoideae TaxID=1699513 RepID=A0A8B8NB92_9MYRT) HSP 1 Score: 123 bits (308), Expect = 1.280e-26 Identity = 80/250 (32.00%), Postives = 129/250 (51.60%), Query Frame = 1
Query: 1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNPYHV--KVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFV 744
VTL T+GYGD+ + TKLF C +ILVG + LL +V + D+QE +LL + + Q + + R++ R+ + KV +A ++ I G + LS+VD+FYL+V S +TVGYGD++ T A + F I +L +STL +A+ TE+ ++ N R K +L K++ D D + DG + K EY+V +L KI +++I + N F ++D G +
Sbjct: 155 VTLCTIGYGDIVPDTTFTKLFTCAFILVGFGFVDILLHGMVTYICDRQEAVLLSTVDQNQ-----------------FNAMVRTYMIDREKGRMRIRMKVCVALAVVISCIAIGTIVVHFIEDLSWVDSFYLSVTSVTTVGYGDYAFTTLAGRCFAIIWLLISTLAVARAFLYLTELRIDKRNRRIAKWVLQRKMTLGDLVAADLDNDGSISKAEYVVYKLKEMGKIAEKDIVPICNQFDIIDNSNCGKI 387
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A6P6SDV1_COFAR (two-pore potassium channel 3-like n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6SDV1_COFAR) HSP 1 Score: 121 bits (303), Expect = 5.410e-26 Identity = 80/247 (32.39%), Postives = 125/247 (50.61%), Query Frame = 1
Query: 1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNP-YHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESG 738
VTL T+GYGD+ + TKL+ C ILVG I LL LV +LD+QEE+LL + + V R K +KVG +A V I G + +++D+FYL+V S +TVGYGD++ T + F I +L VSTL +A+ TE+ ++ N + K +L K++ D D + +G + K EY++ +L KI +++I ++ N F +LD++ G
Sbjct: 149 VTLCTIGYGDIVPDTTFTKLYTCALILVGFGFIDILLHGLVTYVLDRQEEVLLSTVDENRLN----------------AVFRAYMIDTAKGRMRIRIKVGLALAVVVGCIAIGTVMVHKLEEQNWIDSFYLSVTSVTTVGYGDYAFSTLQGRCFAIIWLLVSTLAVARAFLYLTELRIDRRNRKIAKWVLQKKMTPGDLVAADLDHNGSISKSEYVIYKLKEMGKIAEKDIQQICNQFDMLDSNHCG 379
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: UPI00053C8A95 (two-pore potassium channel 3-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C8A95) HSP 1 Score: 122 bits (305), Expect = 5.510e-26 Identity = 82/248 (33.06%), Postives = 134/248 (54.03%), Query Frame = 1
Query: 1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFV 744
VT+ T+GYGD++ +++ TKLF L++LVG I L+ +V +LD QE +L +K GD A + +++ +R +KVG + V I FGV I L ++D+FYL+V+S +TVGYGD + KT ++F +L VSTL +A+ TE V+ N + K++L ++ A F D + +G V K EY++ L KI++++I + + F LDT+ +G +
Sbjct: 191 VTMCTIGYGDITPNSTTTKLFSILFVLVGFGFIDIWLSGMVTYVLDLQESYMLKAVKP---------GDERDKARSYIIDVKKGRMRIR------LKVGLALGVVVLCIGFGVGIMHFIEKLGWLDSFYLSVMSVTTVGYGDHAFKTLPGRLFAAIWLLVSTLAVARAFLYLTEARVDKRNRKRAKKVLCENMTVAQFFAADIDNNGCVSKAEYVIYMLKEMGKISEKDITPISSQFDRLDTNNNGKI 423 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18573.5031.1 >prot_H-elongata_contig18573.5031.1 ID=prot_H-elongata_contig18573.5031.1|Name=mRNA_H-elongata_contig18573.5031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp MIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLback to top mRNA from alignment at H-elongata_contig18573:2214..7181+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18573.5031.1 ID=mRNA_H-elongata_contig18573.5031.1|Name=mRNA_H-elongata_contig18573.5031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4968bp|location=Sequence derived from alignment at H-elongata_contig18573:2214..7181+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18573:2214..7181+ >mRNA_H-elongata_contig18573.5031.1 ID=mRNA_H-elongata_contig18573.5031.1|Name=mRNA_H-elongata_contig18573.5031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig18573:2214..7181+ (Himanthalia elongata Himel1 dioecious)back to top |