mRNA_H-elongata_contig18573.5031.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18573.5031.1
Unique NamemRNA_H-elongata_contig18573.5031.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A6H5LAX6_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAX6_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 2.170e-59
Identity = 124/286 (43.36%), Postives = 174/286 (60.84%), Query Frame = 1
Query:    1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQP---RRGMWGGDRETFAIGWWGVLRRSFSS-------------LRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFVEFDEVSAERDTNNDGIIDMHEI 810
            VTLTTVGYGDLSAH   TKLF C YIL+GVAM+ A L+KLVE+LLD+Q    L +++        + M     +T     WG    +  +             +  +N  +V+VG G+ +FV L+  G  +F     +S +DAFYLTVVS+STVGYGD+ P +T T++F IF+LP+STLLL KVISDYTEM       + Q R+LL+ ++  ++  MD + D +V   E++V  L++QEK+TQE+I+ +   F  LD D +GFV  DE+  ERD + DG I   E+
Sbjct:  167 VTLTTVGYGDLSAHKPVTKLFACFYILIGVAMVAAFLSKLVELLLDKQAGRRLSMIRGMVALVVAQAMGVDYPDTAMKTQWGSGATNGGTPAAQQDTAGDNDDIALVNSINVEVGLGVFYFVLLVGVGTTVFMVYGHMSVIDAFYLTVVSSSTVGYGDYFPSSTGTRLFAIFFLPLSTLLLGKVISDYTEMQANKRVKQRQTRLLLATVTAREYSAMDADNDNRVSLMEFMVHTLIKQEKVTQEDIEEIHTRFTALDKDHNGFVTRDEIGEERDKDGDGFIGADEL 452          
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A2V3ITP7_9FLOR (Two pore potassium channel c n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITP7_9FLOR)

HSP 1 Score: 136 bits (342), Expect = 1.750e-31
Identity = 81/250 (32.40%), Postives = 142/250 (56.80%), Query Frame = 1
Query:    1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSF--SSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFV 744
            VT TTVGYGD++    ++KLFV  Y++V +A+I A+L  +V +L+D+QEE+L++ ++         GGD ++ +       +     S +R+L          I+  + ++  GV +F     LS ++A Y+TV+SASTVG+GD  P    +K+ +  +L  ST+  AKV++D   M  +      Q+R++ +++       MD++RD +VDK E+L + L+R  K+ ++E+  +   F  LD D SG++
Sbjct:  112 VTTTTVGYGDITPTRGSSKLFVIYYVVVSIAIISAVLGHIVGMLIDRQEELLINAME---------GGDEDSDSDNEIQARKGLVDESDIRQLV-------VSISTLLVILAMGVVVFMRLEKLSLLNALYVTVISASTVGFGDLQPTRNVSKMIMTIWLCFSTICAAKVVADVAAMVAKMKQKAVQRRLMSARMDIRTLVGMDKDRDNRVDKTEFLAQMLIRSGKVEEDEVQELLKRFDELDVDNSGYI 345          
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: R7QMR7_CHOCR (EF-hand domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMR7_CHOCR)

HSP 1 Score: 130 bits (328), Expect = 2.060e-29
Identity = 77/253 (30.43%), Postives = 142/253 (56.13%), Query Frame = 1
Query:    1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKR---RQPRRGMWGGDRETFAI---GWWGVLRRSFSSLRKLN-PYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESG 738
            VT TTVGYGD++  +S  KL+V  Y++V + ++  +L+ L+ +LLD+QEE+LL  + R     P   M   D             +  R  ++ + L+   +  +G  + +    +  G+ +F    +L+ +DA Y T++SASTVG+GD+ P   +TK+ +  +L  ST+ + K+++D+T+  V+A      +R+L + ++      +D ++DG VDK E+L + L+R  K+ Q+++D +   F  LD + +G
Sbjct:  113 VTTTTVGYGDITPKSSVAKLYVIYYVIVSIGLVSTMLSYLIGLLLDRQEEVLLAAIVRDRDEDPVSEMRTADGSVDVEEPPSTASINERIMNATKSLDISDYCGLGFAVGFLGLALAVGMLVFMGLENLAPIDAAYATIISASTVGFGDYEPTRNSTKVIMTVWLCFSTIAVGKLVADFTDANVKAKQRDVSRRLLTATMNVESIRNLDMDKDGSVDKCEFLTQMLVRSGKVEQKDLDAILLRFDQLDKNSNG 365          
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: UPI0010360C7B (two-pore potassium channel 3-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010360C7B)

HSP 1 Score: 125 bits (315), Expect = 1.570e-27
Identity = 85/260 (32.69%), Postives = 131/260 (50.38%), Query Frame = 1
Query:    1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSF--SSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFVEFDEVSAERD 774
            VTL T+GYGD+    S TKLF C +ILVG  ++  LL  LV  +LD+QE +LL  +   Q                 +  + R++     +      +KVG  +A  V  I  G         +S+VD+FYL+V S +TVGYGD++  T A + F I +L VSTL +A+     TE+ ++  N R  K +L  K++  D    D + DG + K EY++ +L    KI +++I ++   F  LD    G +   ++  E D
Sbjct:  153 VTLCTIGYGDIVPDTSFTKLFTCAFILVGFGLVDILLNGLVTYILDRQEAVLLSTVDENQ-----------------FNTMVRAYVIDPAKGRMRIRMKVGLALAVVVGCIAIGTVTVHLLEDMSWVDSFYLSVTSVTTVGYGDYAFTTLAGRCFAIIWLLVSTLAVARAFLYLTELRIDKRNRRIAKWVLQKKMTLGDLVAADLDHDGSISKSEYIIYKLREMGKIAEKDIMQICTQFDTLDNTNCGRLTIADLMEESD 395          
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A5J5A522_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5A522_9ASTE)

HSP 1 Score: 124 bits (310), Expect = 6.450e-27
Identity = 83/246 (33.74%), Postives = 126/246 (51.22%), Query Frame = 1
Query:    1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESG 738
            VTL T+GYGD+    + TKLF C +ILVG   +  LL  LV  +LD QE +LL  +   +    +      T+ I           + +      +KVG  +A  ++ I  G         +S+VD+FYL+V S +TVGYGD++ KT   + F I +L VSTL +A+     TE+ ++  N +  K IL  K++  D    D + DG + K EY++ +L    KIT+++I  + N F  LD    G
Sbjct:  148 VTLCTIGYGDIVPDTTFTKLFTCAFILVGFGFVDILLNGLVTYILDMQEAVLLSTVYENKSNTMV-----RTYMI----------DTAKGRMRIRMKVGLALAVVISCIAIGTVSVHFLEEMSWVDSFYLSVTSVTTVGYGDYAFKTLTGRCFAIVWLLVSTLAVARAFLYLTELRIDKRNRKIAKWILQKKMTLGDLVAADLDHDGSISKSEYIIYKLKEMGKITEKDIMLICNQFDTLDHSNCG 378          
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A834GNZ6_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834GNZ6_RHOSS)

HSP 1 Score: 124 bits (310), Expect = 7.820e-27
Identity = 82/246 (33.33%), Postives = 128/246 (52.03%), Query Frame = 1
Query:    1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESG 738
            VTL T+GYGD+    + TKLF C +ILVG   I  LL+ LV  +LD+QE +LL  +   Q    +      T+ I           + +      +KVG  +A  V  I  G    +    L++VD+FYL+V S +TVGYGD++  T   + F I +L VSTL +A+     TE+ ++  N +  K +L  K++  D    D + DG + K EY++ +L    KI ++++ ++ N F +LD    G
Sbjct:  160 VTLCTIGYGDIVPDTTFTKLFTCAFILVGFGFIDILLSGLVTYVLDRQEAVLLSTMDANQLNSMV-----RTYMI----------DTAKGRMRIRIKVGLALAVVVGCIAIGTFTARYLEGLTWVDSFYLSVTSVTTVGYGDYAFTTATGRGFAIIWLLVSTLAVARAFLYLTELRIDKRNRKIAKWVLQRKMTLGDLVAADLDHDGSISKSEYIIYKLKEMGKIAEKDLMQICNQFDMLDNTNCG 390          
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A817A7A8_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A817A7A8_BRANA)

HSP 1 Score: 119 bits (299), Expect = 1.140e-26
Identity = 82/248 (33.06%), Postives = 132/248 (53.23%), Query Frame = 1
Query:    1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFV 744
            VT+ T+GYGD++ ++  TKLF  +++LVG   I  LL+ +V  +LD QE  +LD  KRR+         R ++ I     +++    +R      +KV   +   V+ I  GV I      + ++D+FYL+V+S +TVGYGD + KT   ++F   +L VSTL +A+      E  V+  N    KR+L   +S + F   D + +G V K EY++ +L   EKIT ++I  +   F  LD   +G +
Sbjct:    9 VTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKRREEP-----DKRRSYIID----VKKGRMRIR------LKVALALGVVVSCIALGVGIMHFIEKIDWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAVWLLVSTLAVARAFLYLAEARVDKRNRERAKRVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDITPISKQFDKLDRCSNGKI 241          
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A8B8NB92_9MYRT (two pore potassium channel c-like n=7 Tax=Myrtoideae TaxID=1699513 RepID=A0A8B8NB92_9MYRT)

HSP 1 Score: 123 bits (308), Expect = 1.280e-26
Identity = 80/250 (32.00%), Postives = 129/250 (51.60%), Query Frame = 1
Query:    1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNPYHV--KVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFV 744
            VTL T+GYGD+    + TKLF C +ILVG   +  LL  +V  + D+QE +LL  + + Q                 +  + R++   R+     +  KV   +A  ++ I  G  +      LS+VD+FYL+V S +TVGYGD++  T A + F I +L +STL +A+     TE+ ++  N R  K +L  K++  D    D + DG + K EY+V +L    KI +++I  + N F ++D    G +
Sbjct:  155 VTLCTIGYGDIVPDTTFTKLFTCAFILVGFGFVDILLHGMVTYICDRQEAVLLSTVDQNQ-----------------FNAMVRTYMIDREKGRMRIRMKVCVALAVVISCIAIGTIVVHFIEDLSWVDSFYLSVTSVTTVGYGDYAFTTLAGRCFAIIWLLISTLAVARAFLYLTELRIDKRNRRIAKWVLQRKMTLGDLVAADLDNDGSISKAEYVVYKLKEMGKIAEKDIVPICNQFDIIDNSNCGKI 387          
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: A0A6P6SDV1_COFAR (two-pore potassium channel 3-like n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6SDV1_COFAR)

HSP 1 Score: 121 bits (303), Expect = 5.410e-26
Identity = 80/247 (32.39%), Postives = 125/247 (50.61%), Query Frame = 1
Query:    1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNP-YHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESG 738
            VTL T+GYGD+    + TKL+ C  ILVG   I  LL  LV  +LD+QEE+LL  +   +                   V R       K      +KVG  +A  V  I  G  +       +++D+FYL+V S +TVGYGD++  T   + F I +L VSTL +A+     TE+ ++  N +  K +L  K++  D    D + +G + K EY++ +L    KI +++I ++ N F +LD++  G
Sbjct:  149 VTLCTIGYGDIVPDTTFTKLYTCALILVGFGFIDILLHGLVTYVLDRQEEVLLSTVDENRLN----------------AVFRAYMIDTAKGRMRIRIKVGLALAVVVGCIAIGTVMVHKLEEQNWIDSFYLSVTSVTTVGYGDYAFSTLQGRCFAIIWLLVSTLAVARAFLYLTELRIDRRNRKIAKWVLQKKMTPGDLVAADLDHNGSISKSEYVIYKLKEMGKIAEKDIQQICNQFDMLDSNHCG 379          
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Match: UPI00053C8A95 (two-pore potassium channel 3-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C8A95)

HSP 1 Score: 122 bits (305), Expect = 5.510e-26
Identity = 82/248 (33.06%), Postives = 134/248 (54.03%), Query Frame = 1
Query:    1 VTLTTVGYGDLSAHNSATKLFVCLYILVGVAMIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVLRRSFSSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLTVVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANNTRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEIDRVWNHFKLLDTDESGFV 744
            VT+ T+GYGD++ +++ TKLF  L++LVG   I   L+ +V  +LD QE  +L  +K          GD    A  +   +++    +R      +KVG  +   V  I FGV I      L ++D+FYL+V+S +TVGYGD + KT   ++F   +L VSTL +A+     TE  V+  N +  K++L   ++ A F   D + +G V K EY++  L    KI++++I  + + F  LDT+ +G +
Sbjct:  191 VTMCTIGYGDITPNSTTTKLFSILFVLVGFGFIDIWLSGMVTYVLDLQESYMLKAVKP---------GDERDKARSYIIDVKKGRMRIR------LKVGLALGVVVLCIGFGVGIMHFIEKLGWLDSFYLSVMSVTTVGYGDHAFKTLPGRLFAAIWLLVSTLAVARAFLYLTEARVDKRNRKRAKKVLCENMTVAQFFAADIDNNGCVSKAEYVIYMLKEMGKISEKDITPISSQFDRLDTNNNGKI 423          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18573.5031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAX6_9PHAE2.170e-5943.36EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A2V3ITP7_9FLOR1.750e-3132.40Two pore potassium channel c n=1 Tax=Gracilariopsi... [more]
R7QMR7_CHOCR2.060e-2930.43EF-hand domain-containing protein n=1 Tax=Chondrus... [more]
UPI0010360C7B1.570e-2732.69two-pore potassium channel 3-like n=1 Tax=Camellia... [more]
A0A5J5A522_9ASTE6.450e-2733.74Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A834GNZ6_RHOSS7.820e-2733.33Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
A0A817A7A8_BRANA1.140e-2633.06(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
A0A8B8NB92_9MYRT1.280e-2632.00two pore potassium channel c-like n=7 Tax=Myrtoide... [more]
A0A6P6SDV1_COFAR5.410e-2632.39two-pore potassium channel 3-like n=2 Tax=Coffea T... [more]
UPI00053C8A955.510e-2633.06two-pore potassium channel 3-like isoform X1 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18573contigH-elongata_contig18573:2214..7181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue1.5e-42
Seed eggNOG ortholog2880.D7FN95
KEGG koko:K05389
KEGG TC1.A.1.7
EggNOG free text desc.potassium channel activity
EggNOG OGsKOG1418@1,KOG1418@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Hectar predicted targeting categorysignal anchor
Exons6
Model size2066
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18573.5031.1prot_H-elongata_contig18573.5031.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18573 2307..5955 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.8821542-UTR-H-elongata_contig18573:2213..23061622930061.8821542-UTR-H-elongata_contig18573:2213..2306Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18573 2214..2306 +
1691679266.093615-UTR-H-elongata_contig18573:2213..23061691679266.093615-UTR-H-elongata_contig18573:2213..2306Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18573 2214..2306 +
1622930062.1369631-UTR-H-elongata_contig18573:5955..71811622930062.1369631-UTR-H-elongata_contig18573:5955..7181Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18573 5956..7181 +
1691679266.159036-UTR-H-elongata_contig18573:5955..71811691679266.159036-UTR-H-elongata_contig18573:5955..7181Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18573 5956..7181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930061.8949757-CDS-H-elongata_contig18573:2306..23571622930061.8949757-CDS-H-elongata_contig18573:2306..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 2307..2357 +
1691679266.107827-CDS-H-elongata_contig18573:2306..23571691679266.107827-CDS-H-elongata_contig18573:2306..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 2307..2357 +
1622930062.05757-CDS-H-elongata_contig18573:2797..29381622930062.05757-CDS-H-elongata_contig18573:2797..2938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 2798..2938 +
1691679266.1162732-CDS-H-elongata_contig18573:2797..29381691679266.1162732-CDS-H-elongata_contig18573:2797..2938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 2798..2938 +
1622930062.07409-CDS-H-elongata_contig18573:3929..40651622930062.07409-CDS-H-elongata_contig18573:3929..4065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 3930..4065 +
1691679266.126879-CDS-H-elongata_contig18573:3929..40651691679266.126879-CDS-H-elongata_contig18573:3929..4065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 3930..4065 +
1622930062.0926402-CDS-H-elongata_contig18573:4866..49671622930062.0926402-CDS-H-elongata_contig18573:4866..4967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 4867..4967 +
1691679266.135036-CDS-H-elongata_contig18573:4866..49671691679266.135036-CDS-H-elongata_contig18573:4866..4967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 4867..4967 +
1622930062.108097-CDS-H-elongata_contig18573:5216..53601622930062.108097-CDS-H-elongata_contig18573:5216..5360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 5217..5360 +
1691679266.1430497-CDS-H-elongata_contig18573:5216..53601691679266.1430497-CDS-H-elongata_contig18573:5216..5360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 5217..5360 +
1622930062.1224663-CDS-H-elongata_contig18573:5781..59551622930062.1224663-CDS-H-elongata_contig18573:5781..5955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 5782..5955 +
1691679266.151058-CDS-H-elongata_contig18573:5781..59551691679266.151058-CDS-H-elongata_contig18573:5781..5955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18573 5782..5955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18573.5031.1

>prot_H-elongata_contig18573.5031.1 ID=prot_H-elongata_contig18573.5031.1|Name=mRNA_H-elongata_contig18573.5031.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
MIGALLAKLVEILLDQQEEMLLDILKRRQPRRGMWGGDRETFAIGWWGVL
RRSFSSLRKLNPYHVKVGAGIAWFVALIMFGVAIFKSSMSLSFVDAFYLT
VVSASTVGYGDFSPKTTATKIFVIFYLPVSTLLLAKVISDYTEMTVEANN
TRNQKRILLSKLSKADFDKMDENRDGKVDKWEYLVRQLLRQEKITQEEID
RVWNHFKLLDTDESGFVEFDEVSAERDTNNDGIIDMHEIRSARNLETR*
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mRNA from alignment at H-elongata_contig18573:2214..7181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18573.5031.1 ID=mRNA_H-elongata_contig18573.5031.1|Name=mRNA_H-elongata_contig18573.5031.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4968bp|location=Sequence derived from alignment at H-elongata_contig18573:2214..7181+ (Himanthalia elongata Himel1 dioecious)
GTGACTCTCACAACGGTCGGGTACGGAGATCTCAGCGCTCATAATTCTGC GACGAAGCTGTTCGTGTGCCTGTACATCCTAGTCGGAGTGGCTATGATTG GCGCCTTGCTGGCCAAGCTGGTAGAAATTCTTCTGGATCAACAGGCAAGC AAGCGATCTCGCGCTCAGCGGAAAGCTAACCACCGCAACAATGTCGCAAT GTTCACGTGTAGGGTGACGTGACGGAGGGGGTCAAAGTGAAGAACTGCGT GAGCATCCTCTGGAGTACAATATTCCCACTTGCGTAGCTTGGATGAAATA TGCCACAGCGAAACCGAAATGGTTGAGGGCTAAGACTTCTTCTACCCCCT GTCATCTTTAGTTGTGCTGTCAACAGCATGCAGTAACCTGACCGTTTCTT CGTCTGGCCTCCTCTTGCCTAGGGTCTACCGCTCTAACCAGCCGCTGCAT CGGATCACGATCGCAAAGAGGAAGTCGCGATGAACATCATGCGGAGCGGC GACCACTCTTTGATCTTGAACATCTTCGACCGATACAAACCTTGGCGATT TCAACCTGTTTTACTGTAACAACGTCGCCCGCAGGAAGAGATGCTTCTGG ATATTCTGAAAAGGCGTCAGCCGCGGCGGGGAATGTGGGGTGGTGATAGG GAAACCTTTGCCATAGGATGGTGGGGAGTTCTCCGCAGGAGCTTCAGCAG CCTCCGGAAACTCAACCCATACCACGTAAGAATACAGGAGGTCACGATAT CCGTGTGATGTGACAATGGCATCTTCGGTGACCTCGGCTTCGGCAGCGGC ATCTTCCTCTTGTACTAATTTAGCTTAGTATTATATATGTATATATATCA TATTCAATAATGTAATGTATATATAGAAGCCGCGGCGGGTGGAAAACGTA CTCGGCAGGGCGTCGCGGAGATTCTTGAAAACCCACGAAAACACTATTCA TAGCATCAATAGGTTTCTACTGCCCAAACATCCTCTTTCCACGAAAAACT GAGGTGAAAGACGAGGAAGCACTTCCGGCAGAACCATAATAACTACACGT ACAATATAATGGTAGAACTAATACATACTATAGTTAATGTACGAAAGATT ACTGAATCTCAAGAGACGTACATCCTGGACGAGCACAATGTGCAGAATGC ACATTTAGACCGCGATGGCAGTTATGCGACATGTGTGAAGAAAGCATATT CGTATGCAAAATAGTAAATGTTAGTTCCATTCCCTTGATCTCGAGGGTGT GATTTCTGAAAACATTCCCTGTAGCCCTAACCCCGCCTAGCCCTAACCCC ACCTTTCCATCGATAAACGAGGCGGAGAGGAGGGTCTTCATCCAAAGCAA CTAGCGAGACTGCGAAAACCATCATAAATAAACAGAAAATGTAAAAAGCC AATAGTGACAAAATCGTGGGGGACAGCGAAGACAGCCCGAGCCGGCGTTC TCTCTTTCCCAACCCCTTTTATGTGGGATATACAGTCCCGTCCCGTCCCA TTATATACGATCGACAATCCCTGTACCGGCACTGTACTGGCACTGTACTG ATACCGTGCATACACATTCATGTAATATTACTGGAATGCAACATGTACGG CGCGTAACCTCGCAATTATGCATCAAGAGAATATCCCGGGAAAACTTAAG CCTTTCGGATTTTACTGACTTCCCTCTACCCGCACTGTTGTGTCTCCGAC GACGGACCTCCGTTAGGTAAAGGTCGGGGCGGGAATTGCGTGGTTCGTGG CGCTGATCATGTTCGGAGTGGCGATCTTCAAGTCCTCCATGAGCCTATCC TTCGTCGACGCCTTTTACCTGACGGTCGTCTCTGCCTCCACCGTCGGCTA CGGTACTATTAATACAATATACTACAATACTACGCGACGCTGTACTGGTT CCATGCTGTACTCTAATATTATGTACTCTACTACACTATGCTACAATGAA CTGGTACAACACTATATCACCACATATAATTTACTATACTATTCTACTGT ATACCATACATTACACTATACTACACTACGCTATACAAGTACTACACTGT ACTGGTATTACACTATTATACTACACCAGACAGACTGAACTATCCTACAT AACACTACGGTACACTTTACTCAATTCAGAAAAGATCGTTATAACACAAC TACTCTATGTTACTGCGGAGGCTGCAATTGCTGCGAGAGGCATCTCGCCT TGTGCTCTTCGTGCCCTTCATAATGTGGCACTATTTAATATAGACTTCAC CGAAGCAGGTAGAAAGAAGATGTGGATGTTCGAAGGATTTGAATGAGTTC ATATGTTTTTAGACGAAAATAAGAGTATACCTGATACATGTAAGTTACAG GTCGTTCCAAGAGGAGCGATCAGTGTTTGATGGTGCCTATAATTTTAGTT GCATGCACGCTTTAGTATGTTATTATATATAACTACGTAGATCCACTGCT TCCTTTCACAAGACCGATATAGCATTGTACCAGTACAAATTTCGATCGAC TTGAAAAAGCCCGGCATATTGCGTCATTTTCATCCAAAGTTTGTTTTATT ATACGTCAGCGATGTAGAAAGTGGCCGGATCAAATGCAGCACAGTCTGTC TTTTGAACCCCAAGCTTGAGTCTCATAGGAACCATGGCTGACCTCTGCGC CAGGCGACTTCTCTCCAAAAACGACCGCCACGAAGATATTCGTCATCTTC TATCTCCCTGTATCCACGCTTCTCTTGGCCAAGGTCATTTCGGACTACAC CGAGGTACGAAGGCGATAATATCCAGATAACGAAGGCGATGAAGGGATCC ACTGTATCTCTCTCTTTTCCTGCACTTCCGATGATAAAGAAGCCTTACGA TGAAATGAATGTCACGGCGTAAAGATAGACGGACTGACTAAGTGACTGGC GGTTAAGTATAAGAACATTGGCTGACGGGTTGTCGGTGAATGATGACATC AAAAGAGCTCAAGGGGAAAACGAAAACCGCGGCTGCTGGCTGTAATTTTC CAGATGACGGTTGAGGCAAATAACACGAGGAACCAGAAGCGCATTCTCCT GAGTAAATTATCGAAGGCCGACTTTGACAAAATGGATGAAAACAGAGACG GGAAGGTGGACAAGTGGGAATACCTGGTTCGCCAGCTCTTACGCCAAGTG AGTCCCGAGACAGTAAATTCGATATGTTACAGGGTAGGGGAGGCGACTGT AGGATAGACTCAATAGCGCACAGGGCAGCGTGGGGAGCGATGGGAACAGA CTGGGAACAGACTGGGTGTAATTTTGTCCATACGCACCATCCAGCATTCA AATTCTTGATCTTTGTTTTTAGTGTGCGTCCGAGTACTCGTAACATCTAT GAATTCCCCAAAGGATTATTTCTTCGCATCCAAGGCAACCTGAATTATAT GTAATAAGCGGGTGGCAACCTCCCGGTCAGGTAAATTTTCTCTGTCCTCT CAGGGTCTTCCAGCTTATGGTATGTTATGTCGTACTTTCTCACCTGGGAC AACAAGCAGACCCTCGACAACACACATACGTGGCCTTGGATATATCGGGA CCGTTTTTTTTCGAGCAGGAAAAAATAACACAGGAAGAAATCGATCGGGT ATGGAACCACTTCAAGCTCCTCGACACAGATGAAAGCGGCTTCGTAGAGT TCGATGAGGTCAGCGCAGAGCGTGACACGAACAATGACGGGATCATCGAT ATGCATGAGATTCGTTCGGCGCGCAACCTCGAGACGAGATGAACATCAAC AACCATGGCAACGAGTAAGACATCAGCCCAGAGGTGGGAAAATATATAGA AGTCGATCGGGAGAGGGGTTTACGTCCCATACACACATGCGTTTTCGCCC GAAAAGGTTGCCCTAATTTGTAGGGTATACAGGTTGGTTTCACTTGTTTT CGTGGGGAGAGGGGAATGAGTGGCGCTCTGTAGTCACGGGTTGGTTATTT TGTAGTTTTTACCGATGTCGTGACATCCTCACCGCGTTTACACCAACTAA AGTCCACGTGAAAACCTGGACGACTTCATGTAGCTGTCTGCGGGATTTAT GGCGCGGATGGAGAACACGAGACTGCCAAATTGCGTGATGTTCGGAGAAG TCATGGGAGGTGCGGGCTGTATGGAGGGGGCAGGAAAAAGAGTGGATCGG GTGTCTTCTGGAAGGCTTCAAATCGTTCGGTATTGGCGCCGACCAGTGGA CGATTGCAGCCCAGGACAAGAGGAATGGTGCAAGATGGTGGAACAAGGGG CGGAACATTTCATGAAGAATTGGATCGCTGCAGAGAAAGTCAGGGCTGGA CAACGGCATGCAGCAGTATGTCCAAACGTGACGGGAAAGACGAAGGAGAG GATAGTCCAAAGCAAGCGTGCTCGTGCTGGTTTGCTCGCCATAGTTGATT GGCCACAAGTGGCGTGAACTCGTATCGCCGGGCGTTCTTTGTTTGTCGAT GATGCCATATTGCCTTTCTCTGGCGTGACCTTTTTTCTTTGTTTTCTGCT TCATTTTCGTATGTTTGCCTTCATTGAAACCGCGGCTCTTCGTTCAATCG TTCTTCGATAGACATGCGTCGCGGCAGCCACAAACAGTTAATTAACAACC GTGTCCTCTTTTTTGTGTTTCTTTATTTTACTTTGGAGATGTCGTTTTTG CCGTTTCCTTTTGTGCGGAGAGTACTTATTAATAGTACATTTTCCTTCCG GGTGGTATTTTGTATTTTTCTACCTTATGACCATAGGCTGGATTTTGACA TCAGCTTATTATGTTATAATTACAAAACAGTGTGATTCGGGGTACGATTG GAACGTTCTGTAGCTTGACAACCGTAAAAAAGACTGGAACAAGCTCCTCC TGTTTGGATGCTGGGGTGTGGCCTAAGTTATCACACTGCGGATTCTTGTC GGAGGCGCCTTGGTGTATACATATAAAGGAGTGACTCAAGTTCCTTCCAT TGATAATTTACGAGCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig18573:2214..7181+

>mRNA_H-elongata_contig18573.5031.1 ID=mRNA_H-elongata_contig18573.5031.1|Name=mRNA_H-elongata_contig18573.5031.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig18573:2214..7181+ (Himanthalia elongata Himel1 dioecious)
ATGATTGGCGCCTTGCTGGCCAAGCTGGTAGAAATTCTTCTGGATCAACA
GATGATTGGCGCCTTGCTGGCCAAGCTGGTAGAAATTCTTCTGGATCAAC
AGGAAGAGATGCTTCTGGATATTCTGAAAAGGCGTCAGCCGCGGCGGGGA
ATGTGGGGTGGTGATAGGGAAACCTTTGCCATAGGATGGTGGGGAGTTCT
CCGCAGGAGCTTCAGCAGCCTCCGGAAACTCAACCCATACCACGAAGAGA
TGCTTCTGGATATTCTGAAAAGGCGTCAGCCGCGGCGGGGAATGTGGGGT
GGTGATAGGGAAACCTTTGCCATAGGATGGTGGGGAGTTCTCCGCAGGAG
CTTCAGCAGCCTCCGGAAACTCAACCCATACCACGTAAAGGTCGGGGCGG
GAATTGCGTGGTTCGTGGCGCTGATCATGTTCGGAGTGGCGATCTTCAAG
TCCTCCATGAGCCTATCCTTCGTCGACGCCTTTTACCTGACGGTCGTCTC
TGCCTCCACCGTCGGCTACGGTAAAGGTCGGGGCGGGAATTGCGTGGTTC
GTGGCGCTGATCATGTTCGGAGTGGCGATCTTCAAGTCCTCCATGAGCCT
ATCCTTCGTCGACGCCTTTTACCTGACGGTCGTCTCTGCCTCCACCGTCG
GCTACGGCGACTTCTCTCCAAAAACGACCGCCACGAAGATATTCGTCATC
TTCTATCTCCCTGTATCCACGCTTCTCTTGGCCAAGGTCATTTCGGACTA
CACCGAGGCGACTTCTCTCCAAAAACGACCGCCACGAAGATATTCGTCAT
CTTCTATCTCCCTGTATCCACGCTTCTCTTGGCCAAGGTCATTTCGGACT
ACACCGAGATGACGGTTGAGGCAAATAACACGAGGAACCAGAAGCGCATT
CTCCTGAGTAAATTATCGAAGGCCGACTTTGACAAAATGGATGAAAACAG
AGACGGGAAGGTGGACAAGTGGGAATACCTGGTTCGCCAGCTCTTACGCC
AAATGACGGTTGAGGCAAATAACACGAGGAACCAGAAGCGCATTCTCCTG
AGTAAATTATCGAAGGCCGACTTTGACAAAATGGATGAAAACAGAGACGG
GAAGGTGGACAAGTGGGAATACCTGGTTCGCCAGCTCTTACGCCAAGAAA
AAATAACACAGGAAGAAATCGATCGGGTATGGAACCACTTCAAGCTCCTC
GACACAGATGAAAGCGGCTTCGTAGAGTTCGATGAGGTCAGCGCAGAGCG
TGACACGAACAATGACGGGATCATCGATATGCATGAGATTCGTTCGGCGC
GCAACCTCGAGACGAGATGAGAAAAAATAACACAGGAAGAAATCGATCGG
GTATGGAACCACTTCAAGCTCCTCGACACAGATGAAAGCGGCTTCGTAGA
GTTCGATGAGGTCAGCGCAGAGCGTGACACGAACAATGACGGGATCATCG
ATATGCATGAGATTCGTTCGGCGCGCAACCTCGAGACGAGATGA
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