mRNA_H-elongata_contig184739.4980.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE) HSP 1 Score: 199 bits (507), Expect = 8.050e-57 Identity = 107/172 (62.21%), Postives = 121/172 (70.35%), Query Frame = 2
Query: 2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIPATPGSPETEQAEEE-----HQGKKGKPRCHTRWCSRMTCVPLPSRPGESSAKAL 502
FK KFDE Q++M E KI KHAPQRWLSL RVMERIIRLWHVLRKVY NDG +FPL+K +NKD ILQLYSLL+P +AITRDGQYGAVPM AEMHMAFA LK+E LDP PL+VFDIP TP SP Q++EE + GKK P T P RP + + L
Sbjct: 391 FKQKFDEAQLQMTGEVLKIRKHAPQRWLSLVRVMERIIRLWHVLRKVYANDGVEFPLDKGDNKDNILQLYSLLRPLAAITRDGQYGAVPMSAEMHMAFAELKQEGLDPTGPLKVFDIPPTPDSPAALQSDEELPVTVNTGKKPLPH--------KTVEPAALRPVATKTREL 554
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE) HSP 1 Score: 171 bits (433), Expect = 5.170e-47 Identity = 91/137 (66.42%), Postives = 101/137 (73.72%), Query Frame = 2
Query: 2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIPATPGSPETEQAEEEHQGKK 412
FK KFDE QMEML ET KI++HAPQRWLSL RV+ERIIRLWHVLRK L+SLLQP + ITRDGQYGAVPM AEMHMAFA LKKE+LDP++PL+VFDIPATP SPE EQA+EE KK
Sbjct: 196 FKQKFDEAQMEMLGETLKISRHAPQRWLSLVRVIERIIRLWHVLRK----------------------LFSLLQPLAVITRDGQYGAVPMTAEMHMAFAELKKELLDPDEPLKVFDIPATPVSPEAEQADEEVPKKK 310
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE) HSP 1 Score: 162 bits (410), Expect = 1.280e-44 Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 2
Query: 11 KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLK 307
KF++ +EML+E KITKHAPQRWLSL VMERIIRLWHVLRKVY NDGE+FPL+K NN+D ILQLYSLLQP SAITRDGQYG PM AEMH+AFA LK
Sbjct: 375 KFEKVTLEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAITRDGQYGNAPMTAEMHLAFAQLK 473
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.820e-42 Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 2
Query: 2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
FK KFD+ Q+++L E KI AP+RWL+L R +ER+IRLWHVLRK+Y + G+ FPLE+ +NKD ILQLYSLLQP S++TRDGQYG PM A+++M +LK VLDP + L+VFDIP
Sbjct: 175 FKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGGAPMLADIYMKCGMLKMRVLDPSEELKVFDIP 292
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 158 bits (400), Expect = 9.660e-42 Identity = 73/118 (61.86%), Postives = 93/118 (78.81%), Query Frame = 2
Query: 2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
FK KF++ Q++ML E FK+ KHAPQRWLSL R +ER IRLWHVLRK+Y ++G +FPLE+ + KD ILQLYSLLQP S+ITRDGQYG PM A++ M F +L +VLDP + L+VF +P
Sbjct: 408 FKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQYGDAPMMADIFMKFGMLNTDVLDPSKDLKVFQVP 525
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE) HSP 1 Score: 150 bits (380), Expect = 3.470e-40 Identity = 69/118 (58.47%), Postives = 92/118 (77.97%), Query Frame = 2
Query: 2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
FK KF++ Q+++L + KI APQRWL+ R +ER+IRLWHVLRK+Y + G++FPLE+ +NK+ ILQL+SLLQ S++TRDGQYG PM A++ M F LK EVLDP +PL+VFDIP
Sbjct: 124 FKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQYGNAPMQADVFMKFGELKMEVLDPSKPLKVFDIP 241
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5JGB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB7_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.860e-39 Identity = 67/118 (56.78%), Postives = 90/118 (76.27%), Query Frame = 2
Query: 2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
FK KFD+ Q+++L E KI APQRWL+L R +ER++RLW VLRK+Y + G+ FPLE+ ++KD ILQLYSLLQP ++TRDGQYG PM A+++M F +LK VL P + L+VFD+P
Sbjct: 71 FKAKFDDLQVDVLGEVLKIPDQAPQRWLTLVRTLERVVRLWRVLRKLYSDTGKTFPLEEGDDKDCILQLYSLLQPFPSVTRDGQYGGAPMLADIYMKFGMLKMRVLHPSEELKVFDVP 188
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE) HSP 1 Score: 145 bits (366), Expect = 5.520e-38 Identity = 64/115 (55.65%), Postives = 89/115 (77.39%), Query Frame = 2
Query: 11 KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
KF++ + E+L E K+ KHAPQRWLS+ R MERIIRLWH LRK+Y ++G+ FPLE+ +NK+G+LQLYSLL+P ITRDGQYG PM A+++M +LK +L+ E+ L+V++ P
Sbjct: 66 KFEDLETELLGEVLKVVKHAPQRWLSMVRTMERIIRLWHALRKLYSDEGKVFPLEEGDNKNGVLQLYSLLEPLCMITRDGQYGGAPMMADIYMKMGILKMGMLNLEKELKVYETP 180
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.220e-36 Identity = 65/115 (56.52%), Postives = 88/115 (76.52%), Query Frame = 2
Query: 11 KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
KF++ Q+++L E I APQRWL+L R MER+IRLW V+RK+Y + G++FPLE+ +NKD I QLYSLLQP S++TRDGQYG +PM A+++M F +LK VL+ L+VFDIP
Sbjct: 158 KFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLKVFDIP 272
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE) HSP 1 Score: 141 bits (355), Expect = 7.180e-36 Identity = 65/115 (56.52%), Postives = 88/115 (76.52%), Query Frame = 2
Query: 11 KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
KF++ Q+++L E I APQRWL+L R MER+IRLW V+RK+Y + G++FPLE+ +NKD I QLYSLLQP S++TRDGQYG +PM A+++M F +LK VL+ L+VFDIP
Sbjct: 287 KFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLKVFDIP 401 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig184739.4980.1 >prot_H-elongata_contig184739.4980.1 ID=prot_H-elongata_contig184739.4980.1|Name=mRNA_H-elongata_contig184739.4980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp MEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKback to top mRNA from alignment at H-elongata_contig184739:683..1208+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig184739.4980.1 ID=mRNA_H-elongata_contig184739.4980.1|Name=mRNA_H-elongata_contig184739.4980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=526bp|location=Sequence derived from alignment at H-elongata_contig184739:683..1208+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig184739:683..1208+ >mRNA_H-elongata_contig184739.4980.1 ID=mRNA_H-elongata_contig184739.4980.1|Name=mRNA_H-elongata_contig184739.4980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig184739:683..1208+ (Himanthalia elongata Himel1 dioecious)back to top |