mRNA_H-elongata_contig184739.4980.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184739.4980.1
Unique NamemRNA_H-elongata_contig184739.4980.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 8.050e-57
Identity = 107/172 (62.21%), Postives = 121/172 (70.35%), Query Frame = 2
Query:    2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIPATPGSPETEQAEEE-----HQGKKGKPRCHTRWCSRMTCVPLPSRPGESSAKAL 502
            FK KFDE Q++M  E  KI KHAPQRWLSL RVMERIIRLWHVLRKVY NDG +FPL+K +NKD ILQLYSLL+P +AITRDGQYGAVPM AEMHMAFA LK+E LDP  PL+VFDIP TP SP   Q++EE     + GKK  P          T  P   RP  +  + L
Sbjct:  391 FKQKFDEAQLQMTGEVLKIRKHAPQRWLSLVRVMERIIRLWHVLRKVYANDGVEFPLDKGDNKDNILQLYSLLRPLAAITRDGQYGAVPMSAEMHMAFAELKQEGLDPTGPLKVFDIPPTPDSPAALQSDEELPVTVNTGKKPLPH--------KTVEPAALRPVATKTREL 554          
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 5.170e-47
Identity = 91/137 (66.42%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIPATPGSPETEQAEEEHQGKK 412
            FK KFDE QMEML ET KI++HAPQRWLSL RV+ERIIRLWHVLRK                      L+SLLQP + ITRDGQYGAVPM AEMHMAFA LKKE+LDP++PL+VFDIPATP SPE EQA+EE   KK
Sbjct:  196 FKQKFDEAQMEMLGETLKISRHAPQRWLSLVRVIERIIRLWHVLRK----------------------LFSLLQPLAVITRDGQYGAVPMTAEMHMAFAELKKELLDPDEPLKVFDIPATPVSPEAEQADEEVPKKK 310          
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.280e-44
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 2
Query:   11 KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLK 307
            KF++  +EML+E  KITKHAPQRWLSL  VMERIIRLWHVLRKVY NDGE+FPL+K NN+D ILQLYSLLQP SAITRDGQYG  PM AEMH+AFA LK
Sbjct:  375 KFEKVTLEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAITRDGQYGNAPMTAEMHLAFAQLK 473          
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.820e-42
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
            FK KFD+ Q+++L E  KI   AP+RWL+L R +ER+IRLWHVLRK+Y + G+ FPLE+ +NKD ILQLYSLLQP S++TRDGQYG  PM A+++M   +LK  VLDP + L+VFDIP
Sbjct:  175 FKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGGAPMLADIYMKCGMLKMRVLDPSEELKVFDIP 292          
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 9.660e-42
Identity = 73/118 (61.86%), Postives = 93/118 (78.81%), Query Frame = 2
Query:    2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
            FK KF++ Q++ML E FK+ KHAPQRWLSL R +ER IRLWHVLRK+Y ++G +FPLE+ + KD ILQLYSLLQP S+ITRDGQYG  PM A++ M F +L  +VLDP + L+VF +P
Sbjct:  408 FKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQYGDAPMMADIFMKFGMLNTDVLDPSKDLKVFQVP 525          
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.470e-40
Identity = 69/118 (58.47%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
            FK KF++ Q+++L +  KI   APQRWL+  R +ER+IRLWHVLRK+Y + G++FPLE+ +NK+ ILQL+SLLQ  S++TRDGQYG  PM A++ M F  LK EVLDP +PL+VFDIP
Sbjct:  124 FKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQYGNAPMQADVFMKFGELKMEVLDPSKPLKVFDIP 241          
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5JGB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB7_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.860e-39
Identity = 67/118 (56.78%), Postives = 90/118 (76.27%), Query Frame = 2
Query:    2 FK*KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
            FK KFD+ Q+++L E  KI   APQRWL+L R +ER++RLW VLRK+Y + G+ FPLE+ ++KD ILQLYSLLQP  ++TRDGQYG  PM A+++M F +LK  VL P + L+VFD+P
Sbjct:   71 FKAKFDDLQVDVLGEVLKIPDQAPQRWLTLVRTLERVVRLWRVLRKLYSDTGKTFPLEEGDDKDCILQLYSLLQPFPSVTRDGQYGGAPMLADIYMKFGMLKMRVLHPSEELKVFDVP 188          
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 5.520e-38
Identity = 64/115 (55.65%), Postives = 89/115 (77.39%), Query Frame = 2
Query:   11 KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
            KF++ + E+L E  K+ KHAPQRWLS+ R MERIIRLWH LRK+Y ++G+ FPLE+ +NK+G+LQLYSLL+P   ITRDGQYG  PM A+++M   +LK  +L+ E+ L+V++ P
Sbjct:   66 KFEDLETELLGEVLKVVKHAPQRWLSMVRTMERIIRLWHALRKLYSDEGKVFPLEEGDNKNGVLQLYSLLEPLCMITRDGQYGGAPMMADIYMKMGILKMGMLNLEKELKVYETP 180          
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.220e-36
Identity = 65/115 (56.52%), Postives = 88/115 (76.52%), Query Frame = 2
Query:   11 KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
            KF++ Q+++L E   I   APQRWL+L R MER+IRLW V+RK+Y + G++FPLE+ +NKD I QLYSLLQP S++TRDGQYG +PM A+++M F +LK  VL+    L+VFDIP
Sbjct:  158 KFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLKVFDIP 272          
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 7.180e-36
Identity = 65/115 (56.52%), Postives = 88/115 (76.52%), Query Frame = 2
Query:   11 KFDETQMEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEKDNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPEQPLRVFDIP 355
            KF++ Q+++L E   I   APQRWL+L R MER+IRLW V+RK+Y + G++FPLE+ +NKD I QLYSLLQP S++TRDGQYG +PM A+++M F +LK  VL+    L+VFDIP
Sbjct:  287 KFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLKVFDIP 401          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184739.4980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L1G0_9PHAE8.050e-5762.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ46_9PHAE5.170e-4766.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JYQ2_9PHAE1.280e-4477.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D8_9PHAE1.820e-4260.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE9.660e-4261.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEE6_9PHAE3.470e-4058.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGB7_9PHAE1.860e-3956.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE5.520e-3855.65Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ66_9PHAE1.220e-3656.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE7.180e-3656.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184739contigH-elongata_contig184739:683..1208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size526
Cds size498
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.3468218-UTR-H-elongata_contig184739:682..7101622930057.3468218-UTR-H-elongata_contig184739:682..710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig184739 683..710 +
1691679264.109952-UTR-H-elongata_contig184739:682..7101691679264.109952-UTR-H-elongata_contig184739:682..710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig184739 683..710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930057.3614397-CDS-H-elongata_contig184739:710..12081622930057.3614397-CDS-H-elongata_contig184739:710..1208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184739 711..1208 +
1691679264.1288261-CDS-H-elongata_contig184739:710..12081691679264.1288261-CDS-H-elongata_contig184739:710..1208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184739 711..1208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184739.4980.1prot_H-elongata_contig184739.4980.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184739 711..1208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184739.4980.1

>prot_H-elongata_contig184739.4980.1 ID=prot_H-elongata_contig184739.4980.1|Name=mRNA_H-elongata_contig184739.4980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
MEMLNETFKITKHAPQRWLSLARVMERIIRLWHVLRKVYVNDGEDFPLEK
DNNKDGILQLYSLLQPRSAITRDGQYGAVPMPAEMHMAFAVLKKEVLDPE
QPLRVFDIPATPGSPETEQAEEEHQGKKGKPRCHTRWCSRMTCVPLPSRP
GESSAKALCRGYIQDF
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mRNA from alignment at H-elongata_contig184739:683..1208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184739.4980.1 ID=mRNA_H-elongata_contig184739.4980.1|Name=mRNA_H-elongata_contig184739.4980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=526bp|location=Sequence derived from alignment at H-elongata_contig184739:683..1208+ (Himanthalia elongata Himel1 dioecious)
CTTCAAATAGAAGTTCGACGAGACCCAGATGGAGATGCTGAACGAGACCT TCAAGATCACGAAGCATGCGCCCCAGCGATGGCTGAGCCTCGCCCGCGTG ATGGAGCGCATCATCCGTTTGTGGCACGTCCTCAGGAAGGTCTACGTCAA CGATGGCGAGGACTTCCCTCTTGAAAAGGACAACAACAAAGACGGCATCC TCCAGCTCTACTCGCTGCTCCAGCCTCGTTCCGCAATTACGCGGGACGGC CAGTACGGCGCCGTACCTATGCCGGCAGAGATGCACATGGCGTTCGCCGT ACTGAAGAAGGAAGTGCTCGACCCCGAACAGCCGCTGAGGGTGTTCGACA TCCCCGCGACGCCGGGTTCCCCGGAAACGGAGCAGGCAGAGGAGGAGCAC CAGGGGAAGAAGGGCAAGCCACGCTGCCACACACGATGGTGCAGCCGGAT GACTTGCGTCCCACTACCGTCAAGACCCGGGGAGAGCTCAGCAAAGGCCT TGTGCAGAGGTTATATTCAAGACTTT
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Coding sequence (CDS) from alignment at H-elongata_contig184739:683..1208+

>mRNA_H-elongata_contig184739.4980.1 ID=mRNA_H-elongata_contig184739.4980.1|Name=mRNA_H-elongata_contig184739.4980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig184739:683..1208+ (Himanthalia elongata Himel1 dioecious)
ATGGAGATGCTGAACGAGACCTTCAAGATCACGAAGCATGCGCCCCAGCG
ATGGCTGAGCCTCGCCCGCGTGATGGAGCGCATCATCCGTTTGTGGCACG
TCCTCAGGAAGGTCTACGTCAACGATGGCGAGGACTTCCCTCTTGAAAAG
GACAACAACAAAGACGGCATCCTCCAGCTCTACTCGCTGCTCCAGCCTCG
TTCCGCAATTACGCGGGACGGCCAGTACGGCGCCGTACCTATGCCGGCAG
AGATGCACATGGCGTTCGCCGTACTGAAGAAGGAAGTGCTCGACCCCGAA
CAGCCGCTGAGGGTGTTCGACATCCCCGCGACGCCGGGTTCCCCGGAAAC
GGAGCAGGCAGAGGAGGAGCACCAGGGGAAGAAGGGCAAGCCACGCTGCC
ACACACGATGGTGCAGCCGGATGACTTGCGTCCCACTACCGTCAAGACCC
GGGGAGAGCTCAGCAAAGGCCTTGTGCAGAGGTTATATTCAAGACTTTAT
GGAGATGCTGAACGAGACCTTCAAGATCACGAAGCATGCGCCCCAGCGAT
GGCTGAGCCTCGCCCGCGTGATGGAGCGCATCATCCGTTTGTGGCACGTC
CTCAGGAAGGTCTACGTCAACGATGGCGAGGACTTCCCTCTTGAAAAGGA
CAACAACAAAGACGGCATCCTCCAGCTCTACTCGCTGCTCCAGCCTCGTT
CCGCAATTACGCGGGACGGCCAGTACGGCGCCGTACCTATGCCGGCAGAG
ATGCACATGGCGTTCGCCGTACTGAAGAAGGAAGTGCTCGACCCCGAACA
GCCGCTGAGGGTGTTCGACATCCCCGCGACGCCGGGTTCCCCGGAAACGG
AGCAGGCAGAGGAGGAGCACCAGGGGAAGAAGGGCAAGCCACGCTGCCAC
ACACGATGGTGCAGCCGGATGACTTGCGTCCCACTACCGTCAAGACCCGG
GGAGAGCTCAGCAAAGGCCTTGTGCAGAGGTTATATTCAAGACTTT
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