mRNA_H-elongata_contig184341.4971.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT) HSP 1 Score: 90.1 bits (222), Expect = 2.080e-18 Identity = 62/168 (36.90%), Postives = 83/168 (49.40%), Query Frame = 1
Query: 34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
GQ+ TF YLGSTIS + EI+RR A + F + +V+ S I + K+ L KA V +LYG TWTL R KL EA + LR + TP + EVL R +E L KR L G + RM D+RLP +++ GE+ R G+P
Sbjct: 103 GQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRP 263
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT) HSP 1 Score: 90.1 bits (222), Expect = 9.680e-18 Identity = 62/168 (36.90%), Postives = 83/168 (49.40%), Query Frame = 1
Query: 34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
GQ+ TF YLGSTIS + EI+RR A + F + +V+ S I + K+ L KA V +LYG TWTL R KL EA + LR + TP + EVL R +E L KR L G + RM D+RLP +++ GE+ R G+P
Sbjct: 456 GQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRP 616
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT) HSP 1 Score: 88.6 bits (218), Expect = 2.390e-17 Identity = 62/168 (36.90%), Postives = 82/168 (48.81%), Query Frame = 1
Query: 34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
GQ+ TF YLGSTIS + EI+RR A + F + +V+ S I + K+ L KA V +LYG TWTL R KL E + LR + TP + EVL R IE L KR L G + RM D+RLP +++ GE+ R G+P
Sbjct: 186 GQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFGRLKDRVWKSHDIKLETKIGLFKAVVISTLLYGGETWTLYARHIKKL-EVFQQRSLRSIMRVNWEEKTP------HSEVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRP 346
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT) HSP 1 Score: 87.4 bits (215), Expect = 5.680e-17 Identity = 61/168 (36.31%), Postives = 83/168 (49.40%), Query Frame = 1
Query: 34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
GQ+ TF YLGSTIS+ + EI+RR A + F + +V+ S I + K+ L K V +LYG TWTL R KL EA + LR + TP + EVL R +E L KR L G + RM D+RLP +++ GE+ R G+P
Sbjct: 170 GQKLKTTKTFPYLGSTISNDEQLHHEIERRIAKASSSFGRLKDRVWKSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRP 330
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A7D9IPZ0_PARCT (Reverse transcriptase domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IPZ0_PARCT) HSP 1 Score: 87.8 bits (216), Expect = 6.280e-17 Identity = 59/158 (37.34%), Postives = 80/158 (50.63%), Query Frame = 1
Query: 34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEM 507
GQ+ TF YLGSTIS + EI+RRT A + F + ++++S I + K+ L K V +LYG TWTL R KL EA + LR + TP + EVL R IE L KR L G + RM D+RLP +++ GE+
Sbjct: 647 GQKLKTTKTFRYLGSTISDDAQLDHEIERRTAKASSSFGRLKDRLWNSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLEREKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGEL 797
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR) HSP 1 Score: 87.4 bits (215), Expect = 8.770e-17 Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 1
Query: 34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRG 531
GQR + VD F YLGS +S + E+ R A F + + V+D I K+++ +A V +L+GC TWT+ R KL H L + L + PD EVL+R D I L + L G VARM D+RLP +++ GE+ KR++G
Sbjct: 708 GQRLNAVDKFTYLGSILSRSVVMDDELIARLAKANAAFGRLRKNVWDRRGIRQKTKIKVYRAAVLSTLLHGCETWTIYQRHAKKLNHFHTTSLRKLLGIKWQDKV-PD------TEVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQG 866
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: UPI001CF59A58 (uncharacterized protein LOC122965242 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF59A58) HSP 1 Score: 85.1 bits (209), Expect = 4.600e-16 Identity = 56/166 (33.73%), Postives = 77/166 (46.39%), Query Frame = 1
Query: 40 RYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
R VDTFVYLGSTIS G + EI RT F K ++V+ I + K+ + + +LY WT R +L H+ L R LN + TPD +L E IE +MK L G V RM D+R+P + GE++ KR + +P
Sbjct: 151 RLEVVDTFVYLGSTISRDGSLDAEINLRTQKTGTAFGKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLERFHQKCLRRILNIKWQS-LTPDTAVLQIAEC------PSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKP 309
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: UPI001CF21395 (uncharacterized protein LOC122952729 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF21395) HSP 1 Score: 85.1 bits (209), Expect = 4.880e-16 Identity = 57/166 (34.34%), Postives = 78/166 (46.99%), Query Frame = 1
Query: 40 RYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
R VDTFVYLGSTIS G + EI RT A F K ++V+ I + K+ + + +LY WT R +L H+ L R LN + TPD +L E IE +MK L G V RM D+R+P + GE++ KR + +P
Sbjct: 204 RLEFVDTFVYLGSTISRDGSLDAEINLRTQKASIAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLETFHQKCLRRILNIKWQS-LTPDTGVLQIAEC------PSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKP 362
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: UPI00077B22FF (uncharacterized protein LOC107355912 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B22FF) HSP 1 Score: 84.0 bits (206), Expect = 1.310e-15 Identity = 54/166 (32.53%), Postives = 78/166 (46.99%), Query Frame = 1
Query: 40 RYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
R VDTFVYLGSTIS G + EI RT + F K ++V+ I + K+ + + +LY WT R +L+ H+ L R LN + + S VL + IE +MK L G V RM D+R+P + GE++ KR + +P
Sbjct: 329 RLEVVDTFVYLGSTISRDGSLDAEINLRTQKSSAAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLKRFHQKCLRRILNIKWRS-------LTSDTAVLQIAECPTIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRQQHKP 487
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A5F8H283_MONDO (RNA-directed DNA polymerase n=4 Tax=Monodelphis domestica TaxID=13616 RepID=A0A5F8H283_MONDO) HSP 1 Score: 81.6 bits (200), Expect = 8.030e-15 Identity = 55/168 (32.74%), Postives = 80/168 (47.62%), Query Frame = 1
Query: 34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
G + S V+TF YLGSTI++ G + EI R A + KV I+ K+++ A V ++LYGC TWTL + +L + H+ L + R T EVL R + IEV ++K L +G V R R+P V GE+ R +G+P
Sbjct: 313 GTQLSNVNTFKYLGSTITNDGSLDHEISARIQKANQALGQLRCKVLQLRGISTVTKLKVYNAVVLTLLLYGCETWTLYQKHMKQLEQFHQRSLRSIMRIRWQNRITNQ-------EVLDRANSTSIEVLVLKTQLRWSGHVIRKGPQRIPRQVFYGELSAGLRKQGRP 473 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig184341.4971.1 >prot_H-elongata_contig184341.4971.1 ID=prot_H-elongata_contig184341.4971.1|Name=mRNA_H-elongata_contig184341.4971.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp MQAETVAVEAVGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLback to top mRNA from alignment at H-elongata_contig184341:694..1230- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig184341.4971.1 ID=mRNA_H-elongata_contig184341.4971.1|Name=mRNA_H-elongata_contig184341.4971.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at H-elongata_contig184341:694..1230- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig184341:694..1230- >mRNA_H-elongata_contig184341.4971.1 ID=mRNA_H-elongata_contig184341.4971.1|Name=mRNA_H-elongata_contig184341.4971.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig184341:694..1230- (Himanthalia elongata Himel1 dioecious)back to top |