mRNA_H-elongata_contig184341.4971.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184341.4971.1
Unique NamemRNA_H-elongata_contig184341.4971.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 90.1 bits (222), Expect = 2.080e-18
Identity = 62/168 (36.90%), Postives = 83/168 (49.40%), Query Frame = 1
Query:   34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
            GQ+     TF YLGSTIS    +  EI+RR   A + F +   +V+ S  I +  K+ L KA V   +LYG  TWTL  R   KL EA +   LR +        TP      + EVL R     +E  L KR L   G + RM D+RLP +++ GE+    R  G+P
Sbjct:  103 GQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRP 263          
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 90.1 bits (222), Expect = 9.680e-18
Identity = 62/168 (36.90%), Postives = 83/168 (49.40%), Query Frame = 1
Query:   34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
            GQ+     TF YLGSTIS    +  EI+RR   A + F +   +V+ S  I +  K+ L KA V   +LYG  TWTL  R   KL EA +   LR +        TP      + EVL R     +E  L KR L   G + RM D+RLP +++ GE+    R  G+P
Sbjct:  456 GQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRP 616          
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT)

HSP 1 Score: 88.6 bits (218), Expect = 2.390e-17
Identity = 62/168 (36.90%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
            GQ+     TF YLGSTIS    +  EI+RR   A + F +   +V+ S  I +  K+ L KA V   +LYG  TWTL  R   KL E  +   LR +        TP      + EVL R     IE  L KR L   G + RM D+RLP +++ GE+    R  G+P
Sbjct:  186 GQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFGRLKDRVWKSHDIKLETKIGLFKAVVISTLLYGGETWTLYARHIKKL-EVFQQRSLRSIMRVNWEEKTP------HSEVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRP 346          
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 87.4 bits (215), Expect = 5.680e-17
Identity = 61/168 (36.31%), Postives = 83/168 (49.40%), Query Frame = 1
Query:   34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
            GQ+     TF YLGSTIS+   +  EI+RR   A + F +   +V+ S  I +  K+ L K  V   +LYG  TWTL  R   KL EA +   LR +        TP      + EVL R     +E  L KR L   G + RM D+RLP +++ GE+    R  G+P
Sbjct:  170 GQKLKTTKTFPYLGSTISNDEQLHHEIERRIAKASSSFGRLKDRVWKSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRP 330          
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A7D9IPZ0_PARCT (Reverse transcriptase domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IPZ0_PARCT)

HSP 1 Score: 87.8 bits (216), Expect = 6.280e-17
Identity = 59/158 (37.34%), Postives = 80/158 (50.63%), Query Frame = 1
Query:   34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEM 507
            GQ+     TF YLGSTIS    +  EI+RRT  A + F +   ++++S  I +  K+ L K  V   +LYG  TWTL  R   KL EA +   LR +        TP      + EVL R     IE  L KR L   G + RM D+RLP +++ GE+
Sbjct:  647 GQKLKTTKTFRYLGSTISDDAQLDHEIERRTAKASSSFGRLKDRLWNSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLEREKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGEL 797          
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 87.4 bits (215), Expect = 8.770e-17
Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 1
Query:   34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRG 531
            GQR + VD F YLGS +S    +  E+  R   A   F +  + V+D   I    K+++ +A V   +L+GC TWT+  R   KL   H   L + L      +  PD       EVL+R D   I   L +  L   G VARM D+RLP +++ GE+   KR++G
Sbjct:  708 GQRLNAVDKFTYLGSILSRSVVMDDELIARLAKANAAFGRLRKNVWDRRGIRQKTKIKVYRAAVLSTLLHGCETWTIYQRHAKKLNHFHTTSLRKLLGIKWQDKV-PD------TEVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQG 866          
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: UPI001CF59A58 (uncharacterized protein LOC122965242 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF59A58)

HSP 1 Score: 85.1 bits (209), Expect = 4.600e-16
Identity = 56/166 (33.73%), Postives = 77/166 (46.39%), Query Frame = 1
Query:   40 RYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
            R   VDTFVYLGSTIS  G +  EI  RT      F K  ++V+    I +  K+ +    +   +LY    WT   R   +L   H+  L R LN    +  TPD  +L   E         IE  +MK  L   G V RM D+R+P  +  GE++  KR + +P
Sbjct:  151 RLEVVDTFVYLGSTISRDGSLDAEINLRTQKTGTAFGKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLERFHQKCLRRILNIKWQS-LTPDTAVLQIAEC------PSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKP 309          
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: UPI001CF21395 (uncharacterized protein LOC122952729 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF21395)

HSP 1 Score: 85.1 bits (209), Expect = 4.880e-16
Identity = 57/166 (34.34%), Postives = 78/166 (46.99%), Query Frame = 1
Query:   40 RYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
            R   VDTFVYLGSTIS  G +  EI  RT  A   F K  ++V+    I +  K+ +    +   +LY    WT   R   +L   H+  L R LN    +  TPD  +L   E         IE  +MK  L   G V RM D+R+P  +  GE++  KR + +P
Sbjct:  204 RLEFVDTFVYLGSTISRDGSLDAEINLRTQKASIAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLETFHQKCLRRILNIKWQS-LTPDTGVLQIAEC------PSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKP 362          
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: UPI00077B22FF (uncharacterized protein LOC107355912 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B22FF)

HSP 1 Score: 84.0 bits (206), Expect = 1.310e-15
Identity = 54/166 (32.53%), Postives = 78/166 (46.99%), Query Frame = 1
Query:   40 RYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
            R   VDTFVYLGSTIS  G +  EI  RT  +   F K  ++V+    I +  K+ +    +   +LY    WT   R   +L+  H+  L R LN    +       + S   VL   +   IE  +MK  L   G V RM D+R+P  +  GE++  KR + +P
Sbjct:  329 RLEVVDTFVYLGSTISRDGSLDAEINLRTQKSSAAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLKRFHQKCLRRILNIKWRS-------LTSDTAVLQIAECPTIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRQQHKP 487          
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Match: A0A5F8H283_MONDO (RNA-directed DNA polymerase n=4 Tax=Monodelphis domestica TaxID=13616 RepID=A0A5F8H283_MONDO)

HSP 1 Score: 81.6 bits (200), Expect = 8.030e-15
Identity = 55/168 (32.74%), Postives = 80/168 (47.62%), Query Frame = 1
Query:   34 GQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFLKYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAHRGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTGRVARMHDDRLPNVVMRGEMVGVKRNRGQP 537
            G + S V+TF YLGSTI++ G +  EI  R   A     +   KV     I+   K+++  A V  ++LYGC TWTL  +   +L + H+  L   +      R T         EVL R +   IEV ++K  L  +G V R    R+P  V  GE+    R +G+P
Sbjct:  313 GTQLSNVNTFKYLGSTITNDGSLDHEISARIQKANQALGQLRCKVLQLRGISTVTKLKVYNAVVLTLLLYGCETWTLYQKHMKQLEQFHQRSLRSIMRIRWQNRITNQ-------EVLDRANSTSIEVLVLKTQLRWSGHVIRKGPQRIPRQVFYGELSAGLRKQGRP 473          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184341.4971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7JKI9_PARCT2.080e-1836.90Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A7D9M5G6_PARCT9.680e-1836.90RNA-directed DNA polymerase from mobile element jo... [more]
A0A6S7JBE9_PARCT2.390e-1736.90Reverse transcriptase domain-containing protein (F... [more]
A0A6S7K883_PARCT5.680e-1736.31RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9IPZ0_PARCT6.280e-1737.34Reverse transcriptase domain-containing protein n=... [more]
A0A8C5PP25_9ANUR8.770e-1734.34Reverse transcriptase domain-containing protein n=... [more]
UPI001CF59A584.600e-1633.73uncharacterized protein LOC122965242 n=1 Tax=Acrop... [more]
UPI001CF213954.880e-1634.34uncharacterized protein LOC122952729 n=1 Tax=Acrop... [more]
UPI00077B22FF1.310e-1532.53uncharacterized protein LOC107355912 n=1 Tax=Acrop... [more]
A0A5F8H283_MONDO8.030e-1532.74RNA-directed DNA polymerase n=4 Tax=Monodelphis do... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184341contigH-elongata_contig184341:694..1230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score87.4
Seed ortholog evalue7.2e-15
Seed eggNOG ortholog13616.ENSMODP00000040692
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,49BMJ@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size537
Cds size537
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.82421-CDS-H-elongata_contig184341:693..12301622930056.82421-CDS-H-elongata_contig184341:693..1230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184341 694..1230 -
1691679263.930471-CDS-H-elongata_contig184341:693..12301691679263.930471-CDS-H-elongata_contig184341:693..1230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184341 694..1230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184341.4971.1prot_H-elongata_contig184341.4971.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184341 694..1230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184341.4971.1

>prot_H-elongata_contig184341.4971.1 ID=prot_H-elongata_contig184341.4971.1|Name=mRNA_H-elongata_contig184341.4971.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MQAETVAVEAVGQRYSQVDTFVYLGSTISSVGDVGPEIKRRTGYAWNCFL
KYTRKVYDSPYIAVADKVRLLKAGVFEVMLYGCVTWTLSPRDFDKLREAH
RGMLLRCLNAYTSTRATPDYHMLSYLEVLLRTDYECIEVALMKRILHHTG
RVARMHDDRLPNVVMRGEMVGVKRNRGQP
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mRNA from alignment at H-elongata_contig184341:694..1230-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184341.4971.1 ID=mRNA_H-elongata_contig184341.4971.1|Name=mRNA_H-elongata_contig184341.4971.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at H-elongata_contig184341:694..1230- (Himanthalia elongata Himel1 dioecious)
ATGCAGGCAGAAACGGTTGCCGTGGAGGCCGTGGGGCAAAGGTACAGCCA AGTCGACACCTTCGTGTACCTTGGCAGTACCATCAGCAGCGTTGGGGACG TCGGCCCTGAGATCAAACGCCGTACTGGCTACGCCTGGAACTGCTTCCTC AAATACACCAGGAAGGTGTATGACAGCCCATACATCGCAGTGGCAGACAA GGTCCGTTTACTGAAGGCGGGAGTATTCGAGGTCATGCTCTACGGCTGTG TGACCTGGACTCTTTCACCCCGTGACTTCGACAAGCTGCGGGAAGCTCAC CGCGGAATGCTGCTGAGGTGCCTCAATGCCTACACCTCAACGCGGGCCAC CCCTGACTACCACATGCTTTCATACCTCGAGGTCCTCCTCAGGACTGACT ATGAGTGCATTGAGGTTGCTCTGATGAAGCGCATCCTCCACCACACCGGC CGCGTCGCCCGCATGCACGACGATCGTCTCCCCAACGTCGTCATGCGTGG CGAAATGGTCGGAGTGAAGAGGAACCGGGGCCAGCCT
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Coding sequence (CDS) from alignment at H-elongata_contig184341:694..1230-

>mRNA_H-elongata_contig184341.4971.1 ID=mRNA_H-elongata_contig184341.4971.1|Name=mRNA_H-elongata_contig184341.4971.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig184341:694..1230- (Himanthalia elongata Himel1 dioecious)
ATGCAGGCAGAAACGGTTGCCGTGGAGGCCGTGGGGCAAAGGTACAGCCA
AGTCGACACCTTCGTGTACCTTGGCAGTACCATCAGCAGCGTTGGGGACG
TCGGCCCTGAGATCAAACGCCGTACTGGCTACGCCTGGAACTGCTTCCTC
AAATACACCAGGAAGGTGTATGACAGCCCATACATCGCAGTGGCAGACAA
GGTCCGTTTACTGAAGGCGGGAGTATTCGAGGTCATGCTCTACGGCTGTG
TGACCTGGACTCTTTCACCCCGTGACTTCGACAAGCTGCGGGAAGCTCAC
CGCGGAATGCTGCTGAGGTGCCTCAATGCCTACACCTCAACGCGGGCCAC
CCCTGACTACCACATGCTTTCATACCTCGAGGTCCTCCTCAGGACTGACT
ATGAGTGCATTGAGGTTGCTCTGATGAAGCGCATCCTCCACCACACCGGC
CGCGTCGCCCGCATGCACGACGATCGTCTCCCCAACGTCGTCATGCGTGG
CGAAATGGTCGGAGTGAAGAGGAACCGGGGCCAGCCTATGCAGGCAGAAA
CGGTTGCCGTGGAGGCCGTGGGGCAAAGGTACAGCCAAGTCGACACCTTC
GTGTACCTTGGCAGTACCATCAGCAGCGTTGGGGACGTCGGCCCTGAGAT
CAAACGCCGTACTGGCTACGCCTGGAACTGCTTCCTCAAATACACCAGGA
AGGTGTATGACAGCCCATACATCGCAGTGGCAGACAAGGTCCGTTTACTG
AAGGCGGGAGTATTCGAGGTCATGCTCTACGGCTGTGTGACCTGGACTCT
TTCACCCCGTGACTTCGACAAGCTGCGGGAAGCTCACCGCGGAATGCTGC
TGAGGTGCCTCAATGCCTACACCTCAACGCGGGCCACCCCTGACTACCAC
ATGCTTTCATACCTCGAGGTCCTCCTCAGGACTGACTATGAGTGCATTGA
GGTTGCTCTGATGAAGCGCATCCTCCACCACACCGGCCGCGTCGCCCGCA
TGCACGACGATCGTCTCCCCAACGTCGTCATGCGTGGCGAAATGGTCGGA
GTGAAGAGGAACCGGGGCCAGCCT
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