mRNA_H-elongata_contig18416.4965.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18416.4965.1
Unique NamemRNA_H-elongata_contig18416.4965.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: D8LLX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX1_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 3.550e-46
Identity = 99/142 (69.72%), Postives = 105/142 (73.94%), Query Frame = 1
Query:    1 MVASRTLSAGGGGGIGDGGNVHAPGSRARAHADAVAALERCCRVEGRGGRNVNGGRXXXXXXXAGAALVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNLGEV 426
            +VASR +  GG  G            RARAHADAVAALERCCR EGR G       XXXXXXX   ALVSTV  FNVIHVSCH EAARADR MRVPK+EWEGA LRNSRVACNSLLPLRSPTT +ERY  GL+RHM+NLGEV
Sbjct:  398 IVASRAMQGGGNAGX-------XXXXRARAHADAVAALERCCRGEGRSGGXXXXXXXXXXXXXXXXALVSTVAAFNVIHVSCHQEAARADRAMRVPKSEWEGATLRNSRVACNSLLPLRSPTTPDERYQAGLDRHMANLGEV 532          
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.320e-40
Identity = 88/118 (74.58%), Postives = 92/118 (77.97%), Query Frame = 1
Query:   91 HADAVAALERCCRVEGRGGRNVNGGRXXXXXXXAGA------ALVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNLGEV 426
            HADAVAALERCCR EGR G       XXXXXXX         ALVSTV  FNVIHVSCHHEAARADR MRVPK+EWEGA LRNSRVACNSLLPLRS TT +ERY  GL+RHM+NLGEV
Sbjct: 8190 HADAVAALERCCRGEGRSGGGXXXXXXXXXXXXXXXXXXXXXALVSTVAAFNVIHVSCHHEAARADRAMRVPKSEWEGATLRNSRVACNSLLPLRSSTTPDERYQAGLDRHMANLGEV 8307          
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A7S2G4M4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4M4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.990e-21
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  196 AALVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNLG 420
            A LV++V+ FN IH+SCH +AA+ADR +  PK+E+EGA LRNSR  CNSLLP+  P  S + + L +ERH  N+G
Sbjct:   76 ATLVTSVSAFNTIHLSCHDQAAKADRNLSKPKSEFEGATLRNSRCKCNSLLPINGPEVSSDAFALAIERHFGNVG 150          
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A835Z9Y3_9STRA (E3 ubiquitin-protein ligase UBR4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.940e-20
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 1
Query:  202 LVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPT----------TSEERYNLGLERHMSNLGEV 426
            L++TVT  N IH+SCH EA R+DRG+R PKTEWEGAALRNSRV CNS+LP++ P            +E+ ++ G++ H S+L EV
Sbjct: 6166 LIATVTALNAIHLSCHREAVRSDRGLRNPKTEWEGAALRNSRVLCNSILPIKPPAPASATAAPARNAEDSWSKGVDLHFSHLREV 6250          
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A7S2FLX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLX3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.090e-20
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  196 AALVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNLG 420
            ++L +TV+  N+IH+SCH  AARADR +  PK EWEGA LRNSRVACNS+LPL  P    E Y+  LERH   +G
Sbjct:   30 SSLHTTVSACNLIHLSCHDSAARADRALSRPKNEWEGATLRNSRVACNSILPLHGPDIPAEVYHKALERHFGCVG 104          
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: I2CNY7_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CNY7_NANGC)

HSP 1 Score: 93.6 bits (231), Expect = 2.110e-19
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  202 LVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNL 417
            LV+TV+ FN+IH+SCH EAARADR ++ PK EWEGA+LRNSRV+ N LLP+R P TS + ++  +++H + L
Sbjct:  377 LVTTVSAFNLIHLSCHAEAARADRVLKQPKGEWEGASLRNSRVSANGLLPIRGPQTSPDAFSQAVDKHFARL 448          
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: W7U2B9_9STRA (Zinc finger, ZZ-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2B9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.300e-19
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  202 LVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNL 417
            LV+TV+ FN+IH+SCH EAARADR ++ PK EWEGA+LRNSRV+ N LLP+R P TS + ++  +++H + L
Sbjct: 4536 LVTTVSAFNLIHLSCHAEAARADRVLKQPKGEWEGASLRNSRVSANGLLPIRGPQTSPDAFSQAVDKHFARL 4607          
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A4D9DHT1_9STRA (ZZ-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHT1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.830e-19
Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 1
Query:  202 LVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNL 417
            LV+TV+ FN+IH+SCH EAARADR ++ PK EWEGA+LRNSRV  N LLP+R P TS + ++  +++H + L
Sbjct: 4741 LVTTVSAFNLIHLSCHAEAARADRVLKQPKGEWEGASLRNSRVRANGLLPIRGPHTSPDAFSQAVDKHFARL 4812          
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A0M0JXM7_9EUKA (E3 ubiquitin-protein ligase ubr4 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JXM7_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 1.520e-16
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  208 STVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLER---HMSNLGEV 426
            +TV+ FN+IH SCH +A RA+R ++ PK EWEGA LRNS+  CN+LLPL + T SEE Y + +E+    +S+LG V
Sbjct: 2625 TTVSHFNLIHFSCHRDATRAERALKNPKEEWEGATLRNSQTKCNNLLPLHTSTVSEETYAIHVEQWWASVSHLGRV 2700          
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A7S3JQW5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQW5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.530e-16
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  202 LVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLR-------SPTTSEERYNLGLERHMSNLGEVSL 432
            +VS+V+ +N+IH SCH EA RA+R +R P++EW+GA LRNSRV CNS +PLR         T +   YN  L+RH +++ ++ +
Sbjct: 4141 VVSSVSAWNLIHSSCHREATRAERNLRSPRSEWDGATLRNSRVLCNSFIPLRPSAAIGSDATAATTAYNSALDRHFASMSQLGV 4224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLX1_ECTSI3.550e-4669.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J981_9PHAE2.320e-4074.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G4M4_9STRA8.990e-2154.67Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835Z9Y3_9STRA1.940e-2052.94E3 ubiquitin-protein ligase UBR4-domain-containing... [more]
A0A7S2FLX3_9STRA2.090e-2057.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
I2CNY7_NANGC2.110e-1956.94Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
W7U2B9_9STRA2.300e-1956.94Zinc finger, ZZ-type n=1 Tax=Nannochloropsis gadit... [more]
A0A4D9DHT1_9STRA5.830e-1956.94ZZ-type domain-containing protein n=1 Tax=Nannochl... [more]
A0A0M0JXM7_9EUKA1.520e-1652.63E3 ubiquitin-protein ligase ubr4 n=1 Tax=Chrysochr... [more]
A0A7S3JQW5_9STRA1.530e-1645.24Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18416contigH-elongata_contig18416:5389..5826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue1.5e-39
Seed eggNOG ortholog2880.D8LLX1
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size438
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930056.556084-CDS-H-elongata_contig18416:5388..58261622930056.556084-CDS-H-elongata_contig18416:5388..5826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18416 5389..5826 +
1691679263.801077-CDS-H-elongata_contig18416:5388..58261691679263.801077-CDS-H-elongata_contig18416:5388..5826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18416 5389..5826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18416.4965.1prot_H-elongata_contig18416.4965.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18416 5389..5826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18416.4965.1

>prot_H-elongata_contig18416.4965.1 ID=prot_H-elongata_contig18416.4965.1|Name=mRNA_H-elongata_contig18416.4965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MVASRTLSAGGGGGIGDGGNVHAPGSRARAHADAVAALERCCRVEGRGGR
NVNGGRGGEGVGGAGAALVSTVTPFNVIHVSCHHEAARADRGMRVPKTEW
EGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNLGEVSLL*
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mRNA from alignment at H-elongata_contig18416:5389..5826+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18416.4965.1 ID=mRNA_H-elongata_contig18416.4965.1|Name=mRNA_H-elongata_contig18416.4965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at H-elongata_contig18416:5389..5826+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGCGTCTCGGACTTTGTCGGCCGGTGGAGGTGGCGGTATCGGCGA CGGTGGCAACGTACACGCACCAGGAAGCCGCGCGCGCGCGCACGCCGACG CCGTGGCCGCTCTCGAGCGCTGCTGTCGTGTAGAGGGGCGGGGTGGCAGA AACGTTAATGGAGGCCGTGGTGGTGAAGGTGTGGGAGGGGCTGGAGCTGC GTTGGTTAGCACCGTGACGCCGTTCAACGTGATCCACGTGTCGTGTCACC ACGAGGCAGCCCGGGCGGACCGGGGAATGCGCGTCCCCAAGACAGAGTGG GAGGGGGCCGCGCTCAGGAACTCTCGGGTAGCTTGCAACAGCCTGCTACC CCTGCGCTCGCCGACGACGTCGGAGGAGAGGTACAACCTGGGGCTGGAGC GGCACATGTCCAATCTCGGCGAGGTGAGCCTTCTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig18416:5389..5826+

>mRNA_H-elongata_contig18416.4965.1 ID=mRNA_H-elongata_contig18416.4965.1|Name=mRNA_H-elongata_contig18416.4965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig18416:5389..5826+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGCGTCTCGGACTTTGTCGGCCGGTGGAGGTGGCGGTATCGGCGA
CGGTGGCAACGTACACGCACCAGGAAGCCGCGCGCGCGCGCACGCCGACG
CCGTGGCCGCTCTCGAGCGCTGCTGTCGTGTAGAGGGGCGGGGTGGCAGA
AACGTTAATGGAGGCCGTGGTGGTGAAGGTGTGGGAGGGGCTGGAGCTGC
GTTGGTTAGCACCGTGACGCCGTTCAACGTGATCCACGTGTCGTGTCACC
ACGAGGCAGCCCGGGCGGACCGGGGAATGCGCGTCCCCAAGACAGAGTGG
GAGGGGGCCGCGCTCAGGAACTCTCGGGTAGCTTGCAACAGCCTGCTACC
CCTGCGCTCGCCGACGACGTCGGAGGAGAGGTACAACCTGGGGCTGGAGC
GGCACATGTCCAATCTCGGCGAGGTGAGCCTTCTTTAGATGGTCGCGTCT
CGGACTTTGTCGGCCGGTGGAGGTGGCGGTATCGGCGACGGTGGCAACGT
ACACGCACCAGGAAGCCGCGCGCGCGCGCACGCCGACGCCGTGGCCGCTC
TCGAGCGCTGCTGTCGTGTAGAGGGGCGGGGTGGCAGAAACGTTAATGGA
GGCCGTGGTGGTGAAGGTGTGGGAGGGGCTGGAGCTGCGTTGGTTAGCAC
CGTGACGCCGTTCAACGTGATCCACGTGTCGTGTCACCACGAGGCAGCCC
GGGCGGACCGGGGAATGCGCGTCCCCAAGACAGAGTGGGAGGGGGCCGCG
CTCAGGAACTCTCGGGTAGCTTGCAACAGCCTGCTACCCCTGCGCTCGCC
GACGACGTCGGAGGAGAGGTACAACCTGGGGCTGGAGCGGCACATGTCCA
ATCTCGGCGAGGTGAGCCTTCTTTAG
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