mRNA_H-elongata_contig18416.4965.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: D8LLX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX1_ECTSI) HSP 1 Score: 168 bits (425), Expect = 3.550e-46 Identity = 99/142 (69.72%), Postives = 105/142 (73.94%), Query Frame = 1
Query: 1 MVASRTLSAGGGGGIGDGGNVHAPGSRARAHADAVAALERCCRVEGRGGRNVNGGRXXXXXXXAGAALVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNLGEV 426
+VASR + GG G RARAHADAVAALERCCR EGR G XXXXXXX ALVSTV FNVIHVSCH EAARADR MRVPK+EWEGA LRNSRVACNSLLPLRSPTT +ERY GL+RHM+NLGEV
Sbjct: 398 IVASRAMQGGGNAGX-------XXXXRARAHADAVAALERCCRGEGRSGGXXXXXXXXXXXXXXXXALVSTVAAFNVIHVSCHQEAARADRAMRVPKSEWEGATLRNSRVACNSLLPLRSPTTPDERYQAGLDRHMANLGEV 532
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE) HSP 1 Score: 153 bits (387), Expect = 2.320e-40 Identity = 88/118 (74.58%), Postives = 92/118 (77.97%), Query Frame = 1
Query: 91 HADAVAALERCCRVEGRGGRNVNGGRXXXXXXXAGA------ALVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNLGEV 426
HADAVAALERCCR EGR G XXXXXXX ALVSTV FNVIHVSCHHEAARADR MRVPK+EWEGA LRNSRVACNSLLPLRS TT +ERY GL+RHM+NLGEV
Sbjct: 8190 HADAVAALERCCRGEGRSGGGXXXXXXXXXXXXXXXXXXXXXALVSTVAAFNVIHVSCHHEAARADRAMRVPKSEWEGATLRNSRVACNSLLPLRSSTTPDERYQAGLDRHMANLGEV 8307
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A7S2G4M4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4M4_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 8.990e-21 Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 196 AALVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNLG 420
A LV++V+ FN IH+SCH +AA+ADR + PK+E+EGA LRNSR CNSLLP+ P S + + L +ERH N+G
Sbjct: 76 ATLVTSVSAFNTIHLSCHDQAAKADRNLSKPKSEFEGATLRNSRCKCNSLLPINGPEVSSDAFALAIERHFGNVG 150
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A835Z9Y3_9STRA (E3 ubiquitin-protein ligase UBR4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y3_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.940e-20 Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 1
Query: 202 LVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPT----------TSEERYNLGLERHMSNLGEV 426
L++TVT N IH+SCH EA R+DRG+R PKTEWEGAALRNSRV CNS+LP++ P +E+ ++ G++ H S+L EV
Sbjct: 6166 LIATVTALNAIHLSCHREAVRSDRGLRNPKTEWEGAALRNSRVLCNSILPIKPPAPASATAAPARNAEDSWSKGVDLHFSHLREV 6250
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A7S2FLX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLX3_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.090e-20 Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 196 AALVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNLG 420
++L +TV+ N+IH+SCH AARADR + PK EWEGA LRNSRVACNS+LPL P E Y+ LERH +G
Sbjct: 30 SSLHTTVSACNLIHLSCHDSAARADRALSRPKNEWEGATLRNSRVACNSILPLHGPDIPAEVYHKALERHFGCVG 104
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: I2CNY7_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CNY7_NANGC) HSP 1 Score: 93.6 bits (231), Expect = 2.110e-19 Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 202 LVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNL 417
LV+TV+ FN+IH+SCH EAARADR ++ PK EWEGA+LRNSRV+ N LLP+R P TS + ++ +++H + L
Sbjct: 377 LVTTVSAFNLIHLSCHAEAARADRVLKQPKGEWEGASLRNSRVSANGLLPIRGPQTSPDAFSQAVDKHFARL 448
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: W7U2B9_9STRA (Zinc finger, ZZ-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2B9_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 2.300e-19 Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 202 LVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNL 417
LV+TV+ FN+IH+SCH EAARADR ++ PK EWEGA+LRNSRV+ N LLP+R P TS + ++ +++H + L
Sbjct: 4536 LVTTVSAFNLIHLSCHAEAARADRVLKQPKGEWEGASLRNSRVSANGLLPIRGPQTSPDAFSQAVDKHFARL 4607
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A4D9DHT1_9STRA (ZZ-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHT1_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 5.830e-19 Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 1
Query: 202 LVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLERHMSNL 417
LV+TV+ FN+IH+SCH EAARADR ++ PK EWEGA+LRNSRV N LLP+R P TS + ++ +++H + L
Sbjct: 4741 LVTTVSAFNLIHLSCHAEAARADRVLKQPKGEWEGASLRNSRVRANGLLPIRGPHTSPDAFSQAVDKHFARL 4812
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A0M0JXM7_9EUKA (E3 ubiquitin-protein ligase ubr4 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JXM7_9EUKA) HSP 1 Score: 85.5 bits (210), Expect = 1.520e-16 Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 208 STVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLRSPTTSEERYNLGLER---HMSNLGEV 426
+TV+ FN+IH SCH +A RA+R ++ PK EWEGA LRNS+ CN+LLPL + T SEE Y + +E+ +S+LG V
Sbjct: 2625 TTVSHFNLIHFSCHRDATRAERALKNPKEEWEGATLRNSQTKCNNLLPLHTSTVSEETYAIHVEQWWASVSHLGRV 2700
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Match: A0A7S3JQW5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQW5_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.530e-16 Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 202 LVSTVTPFNVIHVSCHHEAARADRGMRVPKTEWEGAALRNSRVACNSLLPLR-------SPTTSEERYNLGLERHMSNLGEVSL 432
+VS+V+ +N+IH SCH EA RA+R +R P++EW+GA LRNSRV CNS +PLR T + YN L+RH +++ ++ +
Sbjct: 4141 VVSSVSAWNLIHSSCHREATRAERNLRSPRSEWDGATLRNSRVLCNSFIPLRPSAAIGSDATAATTAYNSALDRHFASMSQLGV 4224 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18416.4965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18416.4965.1 >prot_H-elongata_contig18416.4965.1 ID=prot_H-elongata_contig18416.4965.1|Name=mRNA_H-elongata_contig18416.4965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp MVASRTLSAGGGGGIGDGGNVHAPGSRARAHADAVAALERCCRVEGRGGRback to top mRNA from alignment at H-elongata_contig18416:5389..5826+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18416.4965.1 ID=mRNA_H-elongata_contig18416.4965.1|Name=mRNA_H-elongata_contig18416.4965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at H-elongata_contig18416:5389..5826+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18416:5389..5826+ >mRNA_H-elongata_contig18416.4965.1 ID=mRNA_H-elongata_contig18416.4965.1|Name=mRNA_H-elongata_contig18416.4965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig18416:5389..5826+ (Himanthalia elongata Himel1 dioecious)back to top |